BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25410.1
Length=1211
Score E
Sequences producing significant alignments: (Bits) Value
Ahg899149 jgi|Araly1|899149|Al_scaffold_0005_3115 1559 0.0
> Ahg899149 jgi|Araly1|899149|Al_scaffold_0005_3115
Length=1146
Score = 1559 bits (844), Expect = 0.0
Identities = 1052/1150 (91%), Gaps = 24/1150 (2%)
Strand=Plus/Plus
Query 1 ATGACCTCAAAACTActtcctct-c--ctcctcaatctc---atcttc--c-tcttcttc 51
||||||||||||| ||| ||||| | |||||| ||||| ||||| | ||||||||
Sbjct 1 ATGACCTCAAAACAACTCCCTCTCCTTCTCCTCCATCTCTTTTTCTTCTTCTTCTTCTTC 60
Query 52 -t-tt-ccccttctAAACGCATCCGAACAAAAACCTTGCTACAGTTTCTCATGTAGTCAA 108
| || ||||| ||||||||||| |||| ||||||||||||||||||||||||| | |||
Sbjct 61 TTCTTGCCCCTCCTAAACGCATCAGAACCAAAACCTTGCTACAGTTTCTCATGTGGCCAA 120
Query 109 GAGAGCGTCGTTGCTCGTTTCCCTTTCTCCCTATTCTCCTATCAACCTGAGTCATGCGGC 168
| ||||||||||| ||||||||||||||| |||||| |||| ||||||||||| || |||
Sbjct 121 GGGAGCGTCGTTGTTCGTTTCCCTTTCTCGCTATTCCCCTACCAACCTGAGTCCTGTGGC 180
Query 169 TACTCAGGATTCAACCTCATATGCAAAGATGATGCCAATACTACCTTAAAGCTTCCTAAG 228
|||||||||||||||||| |||||| || ||||| ||| ||| |||||||||||||||||
Sbjct 181 TACTCAGGATTCAACCTCCTATGCACAGGTGATGGCAAGACTGCCTTAAAGCTTCCTAAG 240
Query 229 TCTGAACCCTTTCTTGTTAAG-GAGATCGACTATGAAACACAGCGTATTCGCCTCAACGA 287
|| ||||| ||||||| | || ||||||||||||||| ||||||||||||||||||||||
Sbjct 241 TCCGAACCATTTCTTG-TCAGAGAGATCGACTATGAATCACAGCGTATTCGCCTCAACGA 299
Query 288 CCCTGAGAATTGTTTGGCCAGACGACTTCTTAACTTTGACCCTTCAGGATCTCCTTTTTC 347
|||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||
Sbjct 300 CCCTGAGAATTGTTTGGCCAGACGGCTTCTTAACTTTGACCCTTCGGGGTCTCCTTTTTC 359
Query 348 TTTTCTTCGCTCTCGTAACTACACGTTCTTGATCTGTCCTAAGGAAGCGAACATCACTGC 407
| |||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 360 TCCTCTTCGCTCTCGCAACTACACGTTCTTGATTTGTCCTAAGGAAGCGAACGTCACTGC 419
Query 408 ATCCTTCAGAGCTATCGATTGCCTTGGTAA-TACCACTTCCTCCTTCTTTGTTGTGCAGT 466
|||||||||||| ||||||||||||||||| | |||||||||| ||||| || ||||||
Sbjct 420 ATCCTTCAGAGCCATCGATTGCCTTGGTAACT-CCACTTCCTCATTCTTCGTCGTGCAG- 477
Query 467 TTGAGAATC---TCGGTTCGATGCCATCTTCTTGTCACATCTTTAAGATATTACCTCTTC 523
||| | ||| | ||||||||||| ||||||||||| | |||||||| |||||||||||
Sbjct 478 TTG-G-ATCTGGTTGGTTCGATGCCGTCTTCTTGTCAGACCTTTAAGACATTACCTCTTC 535
Query 524 CATTTTCTTGGTTTGTCGCCTACACGACATACCCTGATGGCCAAAACAGTCGAGACATGT 583
|||||||||||| ||||||||||||| ||| ||| | ||||||||||||||||||| |||
Sbjct 536 CATTTTCTTGGTCTGTCGCCTACACGGCATTCCCCGGTGGCCAAAACAGTCGAGACCTGT 595
Query 584 GGCTCAAATGGGACTCGCCGGATTGTAGAGATTGTGAGAGGAGAACTAATTCAAGATGTG 643
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 596 GGCTCAAATGGGACTCGCCGGATTGCAGAGATTGTGAGAGGAGGACTAATTCAAGATGTG 655
Query 644 GATTCAAAAACAATACTTCCCAT-CAAGTCGAATGCTTCAGTTCTGTTAACCCTGGACTT 702
||||||||||||||||||| | | |||||||||||||||||||||| |||||| ||||||
Sbjct 656 GATTCAAAAACAATACTTCGC-TCCAAGTCGAATGCTTCAGTTCTGCTAACCCCGGACTT 714
Query 703 CACAACACAGGCTTACAAGTACTAAAGATAATGTGCCTCTCCCTAGTCGGACCACTCACC 762
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 715 CACAACACAGGCTTACAAGTACTAAAGATAATCTGCCTCTCCCTAGTCGGACCACTCACG 774
Query 763 GCCTTGACTTTTTGTGTCGGTCTTGTCATGTGCAGTTCCGAGAGAGTCTCTTCACAGATA 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 GCCTTGACTTTTTGTGTCGGTCTTGTCATGTGCAGTTCCGAGAGAGTCTCTTCACAGATA 834
Query 823 CAACAAGCAGTGGTTGCACGCCTTTCTGGATCCGTAACGTCGCAGCCAAGCAACGAAGTC 882
||||| ||||||||||||||||||||||||||||||||| ||||||||||| | ||||||
Sbjct 835 CAACACGCAGTGGTTGCACGCCTTTCTGGATCCGTAACGCCGCAGCCAAGCGATGAAGTC 894
Query 883 GCAAGGATAGGTCTCGATGAGTCTACAATTGAGTCATACAAGAAAGTTGAGCTAGGGGAG 942
||||||| ||||| ||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 895 GCAAGGACGGGTCTGGATGAGTCTACGATTGAGTCATACAAGAAAGTTGAGTTAGGGGAG 954
Query 943 AGTAGGAGACTCCCGACCGGGTCAAATGATGTTGTTTGTCCCATTTGTTTGTCGGAATAT 1002
|||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct 955 AGTAGGAGACTCCCGACCGGATCAAATGATGTTGTATGTCCCATTTGTTTGTCAGAATAC 1014
Query 1003 GCAACCAAAGAAACTGTTAGGTGTTTACCTGAATGTGAACATTGCTTCCATACTGAATGT 1062
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1015 GCAACCAAAGAAACTGTTAGGTGTTTACCTGAATGTGAACATTGCTTCCATACCGAATGT 1074
Query 1063 ATTGATGCGTGGCTCAAGTTGCATAGTTCCTGCCCGGTTTGTCGGAGTAATCCATCTCCT 1122
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1075 ATTGATGCGTGGCTCAAGTTGCATAGTTCTTGCCCGGTTTGTCGGAGTAATCCATCTCCT 1134
Query 1123 TTGCGCGATT 1132
||| ||||
Sbjct 1135 GCGCGGGATT 1144
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45213779562
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5