BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25420.1
Length=2625
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932693 jgi|Araly1|932693|scaffold_400681.1 3057 0.0
> Ahg932693 jgi|Araly1|932693|scaffold_400681.1
Length=2291
Score = 3057 bits (1655), Expect = 0.0
Identities = 2067/2263 (91%), Gaps = 39/2263 (2%)
Strand=Plus/Plus
Query 265 AACGATGATCTTAGACGAGAAGAATCGGAAAAATCTCGTATTCCTCATCTTACAGTTCTT 324
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 17 AACGATGATCTTAGACGAGAAAAATCGGAAAAATCTCGTATTCCTAATCTTACAGTTCTT 76
Query 325 TGATGAAGAGGGCTACGAAGAAAGCTTACACTTATTGGAGCAAGATTCAGGTGTTTTCTT 384
||||||||| |||||||||||||||||||||||||||||||| |||||| | ||||||||
Sbjct 77 TGATGAAGAAGGCTACGAAGAAAGCTTACACTTATTGGAGCAGGATTCAAGAGTTTTCTT 136
Query 385 CGATTTTAGCTACCTT-TCTAATGCAATCCTTAATGGTAACTGGAAAGACGCAGATGACT 443
||||||||| || ||| || ||||||||||| |||||||||| ||||| ||||||||||
Sbjct 137 CGATTTTAGTTA-CTTCTCCAATGCAATCCTCAATGGTAACTTCAAAGAAGCAGATGACT 195
Query 444 ATCTCTCAGCATTCACTAGTCCAGAGGCAAATACTTTTTCAAGGAAGATGTTCTTTGGCT 503
|||| | |||||||||| ||||||| |||||||| | |||||||||||||||||||| ||
Sbjct 196 ATCTTTTAGCATTCACTCGTCCAGAAGCAAATACATATTCAAGGAAGATGTTCTTTGACT 255
Query 504 TGTTCAAGTTGAAATTTTCCGAAGCACCGGATAGAAGTGGTGGCTCTGAAGCTGTGAAGA 563
|||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 256 TGTTCAAGCGGAAATTATCCGAAGCACCGGATAGGAGTGGTGGCTCTGAAGCTGTGAACA 315
Query 564 TATTCTCCAAGGATTTGAGACGGATTCCTGTTTTAAAAGATGATAGCTTTGATGATTTGG 623
||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 316 TATTCTCTAAGGATTTGAGACGGATTCCTGTTTTAAAAGATGATAGCTTCGACGATTTGG 375
Query 624 TTGAAGTGATTGCTGTAGATGATATGA-G--A---ATTCCT-GA-GGAGACTTGTTGTGT 675
|||| |||||||||||||||||||||| | | ||| | || ||| |||||||||||
Sbjct 376 TTGAGGTGATTGCTGTAGATGATATGAGGCAAGGGATT-TTGGAGGGA-ACTTGTTGTGT 433
Query 676 GGACAAAGCACCGGGAAGAGCCAAATTGTGTGTTGATCTTCATAAACTAGCAGAAAGCAA 735
||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||
Sbjct 434 GGACAAAGCACCGGGAAGAGCTAAATTGTGTGTTGATCTCCATAAACTAGCTGAAAGCAA 493
Query 736 TCCTTCTTTACGTGGCAAACTTGATTTTCCAAGTTTGAATAAATCTGCATTGCTGGCTCT 795
||||| |||| ||| |||||| || ||||| || ||||||||||||||||||||| | ||
Sbjct 494 TCCTTGTTTATGTGACAAACTAGAATTTCCGAGCTTGAATAAATCTGCATTGCTGTCACT 553
Query 796 TATCTCCCTCCTTTGTCCAAATTGTAGTAGGAGAAAGGGAGGTTTGAAGGAAGATCTCAT 855
||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 554 TATCTCCCTTATTTGTCCAAATTGTAGTGGGAGAAACGGAGGTTTGAAGGAAGATCTCAT 613
Query 856 TTGCTTAATCCTTCAATTTCTCTATGAAGCGAAGTACAAGAACACTCTGCATAAACTAGA 915
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 614 TTGCTTAATCCTTCAATTTCTCTATGAAGCCAAGTACAAGAACACTCTGCATAAGTTAGA 673
Query 916 GCAAGAAACAAAAGTGTTCTTCAACTTAAATTATCTGGCGGAAGTGATGAAGCTTGGTGA 975
||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||
Sbjct 674 GCAAGAAACAAAAGTCTTCTTCAACTTAAATTATCTGGCGGAAGTGATGAAACTCGGTGA 733
Query 976 ATATGGTAAAGCTGAAGAGTATCTGGGAGCTTTTACAAACTGGGAAGATAATAAGTACTC 1035
|||||| |||||||||||||| ||||||||||||||| ||| ||||||| ||||||||
Sbjct 734 ATATGGCAAAGCTGAAGAGTACCTGGGAGCTTTTACAGACTCAAAAGATAACAAGTACTC 793
Query 1036 AAAGGCTATGTTTCTTGAACTTCAGAAACTTATATGCCTACAATCTACAGAATGGGAGGT 1095
||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||
Sbjct 794 AAAGGCTATGTTTCTTGAAATCCAGAAACTTACATGCCTACAATCTACAGAATGGGAGGT 853
Query 1096 TGCAACCCCATCTGGATCTCTTGATAACATGTCGCTGAAGATAAAGCTGCATGCCTCTGT 1155
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 854 TGCAACCCCATCTGGATCTCTTGATAACATGTCGCCGAAGATAAAGCTACATGCCTCTGT 913
Query 1156 TGCCATGCTAGCCAAGAAGAATCCAGTACTGAAAGATGAACTCAAGTTTCCTAGTATGGA 1215
|||||||||||| ||||||||||| |||||||||||| |||||||||||||||| |||||
Sbjct 914 TGCCATGCTAGCGAAGAAGAATCCCGTACTGAAAGATAAACTCAAGTTTCCTAGCATGGA 973
Query 1216 AAAGTCAAGACTTTTAACACTGGTGAAGCAGACTATGGACTGGT-G-------G-ACATG 1266
|||||||||||||||||||||| ||||||||||||||||||||| | | |||||
Sbjct 974 AAAGTCAAGACTTTTAACACTGATGAAGCAGACTATGGACTGGTGGACTTCTCGTACATG 1033
Query 1267 CAACAATACTAGTTCTCTGGAAAATGTTCCAGTAGTGTCATATCTTTGTGGCACACCA-T 1325
||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 1034 CAACAATTCTAGTTCTCTGGAAAATGTTCCAGTAGTGTCATACCTTTGTGGCACACCATT 1093
Query 1326 CTTCTATGAAAttttttttCAAGAAAACAGTACCAAGGAAGAA----G--------AAAC 1373
| ||| ||||| ||||| ||||||| | ||||||||| | ||||
Sbjct 1094 C-TCTTTGAAAAAAAAATTCAATAAAACAGGGCAAAGGAAGAAGGTTGTTAACTACAAAC 1152
Query 1374 CAAACGAAATCAAAGATCCTTCTCAGTGCAATGCACTCGTTCTTCCTGATTGTTTCTCAG 1433
||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 1153 CAAACGAAATCAATGATCCATCTCAGTGCAATGCACTCGTTCTTCCTGATTATTTCTCAG 1212
Query 1434 AAGAAAAGATTGCACGTTTGACCTATTCCCCTTCTGGAGATTACATACTGGCTTTGGCAG 1493
|||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1213 AAGAGATGATTGCACGTTTGACCTATTCCCCTTCTGGAGATTATATACTGGCTTTGGCAG 1272
Query 1494 AAGACGCCACACATAAACTCTGGACATGGTCGAGTAGCCAAAATGAATTCTGCAAGGAAA 1553
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 1273 AAGACGCCACACATAAACTCTGGACGTGGTCGAGTAGCCAAAATGAATTCTCCAAGGAAA 1332
Query 1554 ATGTATATCCAAAGCCACGATTACATCAACCTCAAAGTGGGAAAACTATGGAAAATGAGA 1613
|||||| ||| ||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 1333 ATGTATTTCCGAAGCCACGATTACATCAACCTCAAAGTGGGAAAACTATGAAAAACGAGA 1392
Query 1614 TGGCCACCTCTGTTCAGAAGTCAACGTCATGTTTTGCGGTCAAGGGTTCCTATCTTTTCT 1673
||||| ||||||||||||| |||||||||||||| || |||||||||||||||||||||
Sbjct 1393 TGGCCGCCTCTGTTCAGAATTCAACGTCATGTTTCGCTATCAAGGGTTCCTATCTTTTCT 1452
Query 1674 CGACTTCAGGAGGAAAGATAGCAGTTTTTGATCTAAAGAATTTTGAGAAGGTAGCTTCTT 1733
| |||||||||||||| ||||||||||||||| |||||| |||||||||||||||| |||
Sbjct 1453 CTACTTCAGGAGGAAAAATAGCAGTTTTTGATGTAAAGAGTTTTGAGAAGGTAGCTGCTT 1512
Query 1734 TTGGAAGTCCTACACCTATGGCTACGTATTTTATATTTATTCCTGGTGATTTGCTTGCCG 1793
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1513 TTGGAAGTCCTACACCTATGGCTACGTATTTTATATTTATTCCTGGTGATTTGCTTGCTG 1572
Query 1794 TCGGGCTAGATGATGGCTCTATCTTTATCCATTGTTTATCCTCGAGAAAGGTCAAAGAAA 1853
||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1573 TCGGGCTGGATGATGGTTCTATCTTTATCCATTGTTTATCTTCGAGAAAGGTCAAAGAAA 1632
Query 1854 AGTTGGAGGGCCACGACCAGAAAATAACCTGCCTAGCATTTTCTCGCTGTTTTAATGTCC 1913
|| ||||||| || || ||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 1633 AGCTGGAGGGGCATGATCAGAAAATAACCTGCTTAGCATTTTCCCGCTGTTTTAATGTCC 1692
Query 1914 TCGTCTCATCTGACTCTGATGGAAAGCTCTGTCTTTGGAGCACAAAGAGCTGGGTTAAGC 1973
| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1693 TTGTCTCATCTGACTCTGATGGAAAGCTCTGTCTTTGGAGCACAAATAGTTGGGTTAAGC 1752
Query 1974 TAACAAGTAAGAACTCTACGCGTAAATTTTGCAACCGGTCTAACCTTGAATCCACCTCTT 2033
|||||||||||||||||| |||||| ||||||| ||||| ||| | ||| ||||||||||
Sbjct 1753 TAACAAGTAAGAACTCTATGCGTAAGTTTTGCACCCGGTTTAATCATGAGTCCACCTCTT 1812
Query 2034 TAGTAACTCACATCCAGTTTGACCCATATCAAATTGAGCTACTCGTGGTCCATGATGGGT 2093
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1813 TAGTAACTCACATCCAGTTTGACCCATATCAAATTGAGCTACTTGTGGTCCATGA-GGGT 1871
Query 2094 -GGATAGGAT-TATACGAAGTTCGAACTCTTGATTGCCGTTTGCAGTGGATACCCGATGC 2151
||||||| | ||||||||| || ||||||||||||||||||||||||| |||||||||
Sbjct 1872 TGGATAGG-TGTATACGAAGCTCAAACTCTTGATTGCCGTTTGCAGTGGGTACCCGATGA 1930
Query 2152 ATCTGATCCTGCAATAACTTCTGCTACATATTCTTCCGATGGTGAGATCATCTATGTTGG 2211
||||||| || |||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 1931 ATCTGATACTTCAATAACTTCCGCTACATATTCTTCCGATGGTGAGATCATCTATGCTGG 1990
Query 2212 ATTTAGATGTGGATCTATTAAAATTGTGGACTCCAAGACTTTTATGACACTATGTCAAAT 2271
|||||| |||||| ||| |||||||||||||||| ||| || ||||| |||||| |||
Sbjct 1991 CTTTAGAAGTGGATTTATAAAAATTGTGGACTCCAGGACCTTCATGACGGTATGTCGAAT 2050
Query 2272 CAATCTGACTTCTTTTACTCAACTCAGCACCAGCAACATCAGTCTCGAGGTTTATCCGAC 2331
|||| |||||||| ||||||||| |||| ||| ||||||||| |||||||||||||||||
Sbjct 2051 CAATATGACTTCTCTTACTCAACCCAGCCCCAACAACATCAGGCTCGAGGTTTATCCGAC 2110
Query 2332 TGTTGTTGCCGCTCATCCTTCACATCCTAATCAGATATCGGCTGGGCTTAGTAATGGTAA 2391
||||||||||||||||||||||||||| | |||||| || ||||| || |||||||||||
Sbjct 2111 TGTTGTTGCCGCTCATCCTTCACATCCGAGTCAGATCTCTGCTGGACTCAGTAATGGTAA 2170
Query 2392 GGTCATTGTCCTTCAGCCGTTGTGGAGTGGAGGATGGGGTGAAGCAGCTCCACTTGAAGA 2451
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2171 GGTCATCGTCCTTCAGCCATTGTGGAGTGGAGGATGGGGTGAAGCAGCTCCACTTGAAGA 2230
Query 2452 CAATGGAGATTATTCTAATGACTCAGATCATAGTTACTGACCA 2494
|||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2231 CAATGGAGGTTATTCTAATGACTCAGATCATAGTTACTGACCA 2273
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98996546755
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5