BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G25420.1 Length=2625 Score E Sequences producing significant alignments: (Bits) Value Ahg932693 jgi|Araly1|932693|scaffold_400681.1 3057 0.0 > Ahg932693 jgi|Araly1|932693|scaffold_400681.1 Length=2291 Score = 3057 bits (1655), Expect = 0.0 Identities = 2067/2263 (91%), Gaps = 39/2263 (2%) Strand=Plus/Plus Query 265 AACGATGATCTTAGACGAGAAGAATCGGAAAAATCTCGTATTCCTCATCTTACAGTTCTT 324 ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 17 AACGATGATCTTAGACGAGAAAAATCGGAAAAATCTCGTATTCCTAATCTTACAGTTCTT 76 Query 325 TGATGAAGAGGGCTACGAAGAAAGCTTACACTTATTGGAGCAAGATTCAGGTGTTTTCTT 384 ||||||||| |||||||||||||||||||||||||||||||| |||||| | |||||||| Sbjct 77 TGATGAAGAAGGCTACGAAGAAAGCTTACACTTATTGGAGCAGGATTCAAGAGTTTTCTT 136 Query 385 CGATTTTAGCTACCTT-TCTAATGCAATCCTTAATGGTAACTGGAAAGACGCAGATGACT 443 ||||||||| || ||| || ||||||||||| |||||||||| ||||| |||||||||| Sbjct 137 CGATTTTAGTTA-CTTCTCCAATGCAATCCTCAATGGTAACTTCAAAGAAGCAGATGACT 195 Query 444 ATCTCTCAGCATTCACTAGTCCAGAGGCAAATACTTTTTCAAGGAAGATGTTCTTTGGCT 503 |||| | |||||||||| ||||||| |||||||| | |||||||||||||||||||| || Sbjct 196 ATCTTTTAGCATTCACTCGTCCAGAAGCAAATACATATTCAAGGAAGATGTTCTTTGACT 255 Query 504 TGTTCAAGTTGAAATTTTCCGAAGCACCGGATAGAAGTGGTGGCTCTGAAGCTGTGAAGA 563 |||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||| | Sbjct 256 TGTTCAAGCGGAAATTATCCGAAGCACCGGATAGGAGTGGTGGCTCTGAAGCTGTGAACA 315 Query 564 TATTCTCCAAGGATTTGAGACGGATTCCTGTTTTAAAAGATGATAGCTTTGATGATTTGG 623 ||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 316 TATTCTCTAAGGATTTGAGACGGATTCCTGTTTTAAAAGATGATAGCTTCGACGATTTGG 375 Query 624 TTGAAGTGATTGCTGTAGATGATATGA-G--A---ATTCCT-GA-GGAGACTTGTTGTGT 675 |||| |||||||||||||||||||||| | | ||| | || ||| ||||||||||| Sbjct 376 TTGAGGTGATTGCTGTAGATGATATGAGGCAAGGGATT-TTGGAGGGA-ACTTGTTGTGT 433 Query 676 GGACAAAGCACCGGGAAGAGCCAAATTGTGTGTTGATCTTCATAAACTAGCAGAAAGCAA 735 ||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||| Sbjct 434 GGACAAAGCACCGGGAAGAGCTAAATTGTGTGTTGATCTCCATAAACTAGCTGAAAGCAA 493 Query 736 TCCTTCTTTACGTGGCAAACTTGATTTTCCAAGTTTGAATAAATCTGCATTGCTGGCTCT 795 ||||| |||| ||| |||||| || ||||| || ||||||||||||||||||||| | || Sbjct 494 TCCTTGTTTATGTGACAAACTAGAATTTCCGAGCTTGAATAAATCTGCATTGCTGTCACT 553 Query 796 TATCTCCCTCCTTTGTCCAAATTGTAGTAGGAGAAAGGGAGGTTTGAAGGAAGATCTCAT 855 ||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||| Sbjct 554 TATCTCCCTTATTTGTCCAAATTGTAGTGGGAGAAACGGAGGTTTGAAGGAAGATCTCAT 613 Query 856 TTGCTTAATCCTTCAATTTCTCTATGAAGCGAAGTACAAGAACACTCTGCATAAACTAGA 915 |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 614 TTGCTTAATCCTTCAATTTCTCTATGAAGCCAAGTACAAGAACACTCTGCATAAGTTAGA 673 Query 916 GCAAGAAACAAAAGTGTTCTTCAACTTAAATTATCTGGCGGAAGTGATGAAGCTTGGTGA 975 ||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||| Sbjct 674 GCAAGAAACAAAAGTCTTCTTCAACTTAAATTATCTGGCGGAAGTGATGAAACTCGGTGA 733 Query 976 ATATGGTAAAGCTGAAGAGTATCTGGGAGCTTTTACAAACTGGGAAGATAATAAGTACTC 1035 |||||| |||||||||||||| ||||||||||||||| ||| ||||||| |||||||| Sbjct 734 ATATGGCAAAGCTGAAGAGTACCTGGGAGCTTTTACAGACTCAAAAGATAACAAGTACTC 793 Query 1036 AAAGGCTATGTTTCTTGAACTTCAGAAACTTATATGCCTACAATCTACAGAATGGGAGGT 1095 ||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||| Sbjct 794 AAAGGCTATGTTTCTTGAAATCCAGAAACTTACATGCCTACAATCTACAGAATGGGAGGT 853 Query 1096 TGCAACCCCATCTGGATCTCTTGATAACATGTCGCTGAAGATAAAGCTGCATGCCTCTGT 1155 ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct 854 TGCAACCCCATCTGGATCTCTTGATAACATGTCGCCGAAGATAAAGCTACATGCCTCTGT 913 Query 1156 TGCCATGCTAGCCAAGAAGAATCCAGTACTGAAAGATGAACTCAAGTTTCCTAGTATGGA 1215 |||||||||||| ||||||||||| |||||||||||| |||||||||||||||| ||||| Sbjct 914 TGCCATGCTAGCGAAGAAGAATCCCGTACTGAAAGATAAACTCAAGTTTCCTAGCATGGA 973 Query 1216 AAAGTCAAGACTTTTAACACTGGTGAAGCAGACTATGGACTGGT-G-------G-ACATG 1266 |||||||||||||||||||||| ||||||||||||||||||||| | | ||||| Sbjct 974 AAAGTCAAGACTTTTAACACTGATGAAGCAGACTATGGACTGGTGGACTTCTCGTACATG 1033 Query 1267 CAACAATACTAGTTCTCTGGAAAATGTTCCAGTAGTGTCATATCTTTGTGGCACACCA-T 1325 ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| | Sbjct 1034 CAACAATTCTAGTTCTCTGGAAAATGTTCCAGTAGTGTCATACCTTTGTGGCACACCATT 1093 Query 1326 CTTCTATGAAAttttttttCAAGAAAACAGTACCAAGGAAGAA----G--------AAAC 1373 | ||| ||||| ||||| ||||||| | ||||||||| | |||| Sbjct 1094 C-TCTTTGAAAAAAAAATTCAATAAAACAGGGCAAAGGAAGAAGGTTGTTAACTACAAAC 1152 Query 1374 CAAACGAAATCAAAGATCCTTCTCAGTGCAATGCACTCGTTCTTCCTGATTGTTTCTCAG 1433 ||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||| Sbjct 1153 CAAACGAAATCAATGATCCATCTCAGTGCAATGCACTCGTTCTTCCTGATTATTTCTCAG 1212 Query 1434 AAGAAAAGATTGCACGTTTGACCTATTCCCCTTCTGGAGATTACATACTGGCTTTGGCAG 1493 |||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1213 AAGAGATGATTGCACGTTTGACCTATTCCCCTTCTGGAGATTATATACTGGCTTTGGCAG 1272 Query 1494 AAGACGCCACACATAAACTCTGGACATGGTCGAGTAGCCAAAATGAATTCTGCAAGGAAA 1553 ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| Sbjct 1273 AAGACGCCACACATAAACTCTGGACGTGGTCGAGTAGCCAAAATGAATTCTCCAAGGAAA 1332 Query 1554 ATGTATATCCAAAGCCACGATTACATCAACCTCAAAGTGGGAAAACTATGGAAAATGAGA 1613 |||||| ||| ||||||||||||||||||||||||||||||||||||||| |||| |||| Sbjct 1333 ATGTATTTCCGAAGCCACGATTACATCAACCTCAAAGTGGGAAAACTATGAAAAACGAGA 1392 Query 1614 TGGCCACCTCTGTTCAGAAGTCAACGTCATGTTTTGCGGTCAAGGGTTCCTATCTTTTCT 1673 ||||| ||||||||||||| |||||||||||||| || ||||||||||||||||||||| Sbjct 1393 TGGCCGCCTCTGTTCAGAATTCAACGTCATGTTTCGCTATCAAGGGTTCCTATCTTTTCT 1452 Query 1674 CGACTTCAGGAGGAAAGATAGCAGTTTTTGATCTAAAGAATTTTGAGAAGGTAGCTTCTT 1733 | |||||||||||||| ||||||||||||||| |||||| |||||||||||||||| ||| Sbjct 1453 CTACTTCAGGAGGAAAAATAGCAGTTTTTGATGTAAAGAGTTTTGAGAAGGTAGCTGCTT 1512 Query 1734 TTGGAAGTCCTACACCTATGGCTACGTATTTTATATTTATTCCTGGTGATTTGCTTGCCG 1793 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1513 TTGGAAGTCCTACACCTATGGCTACGTATTTTATATTTATTCCTGGTGATTTGCTTGCTG 1572 Query 1794 TCGGGCTAGATGATGGCTCTATCTTTATCCATTGTTTATCCTCGAGAAAGGTCAAAGAAA 1853 ||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1573 TCGGGCTGGATGATGGTTCTATCTTTATCCATTGTTTATCTTCGAGAAAGGTCAAAGAAA 1632 Query 1854 AGTTGGAGGGCCACGACCAGAAAATAACCTGCCTAGCATTTTCTCGCTGTTTTAATGTCC 1913 || ||||||| || || ||||||||||||||| |||||||||| |||||||||||||||| Sbjct 1633 AGCTGGAGGGGCATGATCAGAAAATAACCTGCTTAGCATTTTCCCGCTGTTTTAATGTCC 1692 Query 1914 TCGTCTCATCTGACTCTGATGGAAAGCTCTGTCTTTGGAGCACAAAGAGCTGGGTTAAGC 1973 | |||||||||||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct 1693 TTGTCTCATCTGACTCTGATGGAAAGCTCTGTCTTTGGAGCACAAATAGTTGGGTTAAGC 1752 Query 1974 TAACAAGTAAGAACTCTACGCGTAAATTTTGCAACCGGTCTAACCTTGAATCCACCTCTT 2033 |||||||||||||||||| |||||| ||||||| ||||| ||| | ||| |||||||||| Sbjct 1753 TAACAAGTAAGAACTCTATGCGTAAGTTTTGCACCCGGTTTAATCATGAGTCCACCTCTT 1812 Query 2034 TAGTAACTCACATCCAGTTTGACCCATATCAAATTGAGCTACTCGTGGTCCATGATGGGT 2093 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| Sbjct 1813 TAGTAACTCACATCCAGTTTGACCCATATCAAATTGAGCTACTTGTGGTCCATGA-GGGT 1871 Query 2094 -GGATAGGAT-TATACGAAGTTCGAACTCTTGATTGCCGTTTGCAGTGGATACCCGATGC 2151 ||||||| | ||||||||| || ||||||||||||||||||||||||| ||||||||| Sbjct 1872 TGGATAGG-TGTATACGAAGCTCAAACTCTTGATTGCCGTTTGCAGTGGGTACCCGATGA 1930 Query 2152 ATCTGATCCTGCAATAACTTCTGCTACATATTCTTCCGATGGTGAGATCATCTATGTTGG 2211 ||||||| || |||||||||| |||||||||||||||||||||||||||||||||| ||| Sbjct 1931 ATCTGATACTTCAATAACTTCCGCTACATATTCTTCCGATGGTGAGATCATCTATGCTGG 1990 Query 2212 ATTTAGATGTGGATCTATTAAAATTGTGGACTCCAAGACTTTTATGACACTATGTCAAAT 2271 |||||| |||||| ||| |||||||||||||||| ||| || ||||| |||||| ||| Sbjct 1991 CTTTAGAAGTGGATTTATAAAAATTGTGGACTCCAGGACCTTCATGACGGTATGTCGAAT 2050 Query 2272 CAATCTGACTTCTTTTACTCAACTCAGCACCAGCAACATCAGTCTCGAGGTTTATCCGAC 2331 |||| |||||||| ||||||||| |||| ||| ||||||||| ||||||||||||||||| Sbjct 2051 CAATATGACTTCTCTTACTCAACCCAGCCCCAACAACATCAGGCTCGAGGTTTATCCGAC 2110 Query 2332 TGTTGTTGCCGCTCATCCTTCACATCCTAATCAGATATCGGCTGGGCTTAGTAATGGTAA 2391 ||||||||||||||||||||||||||| | |||||| || ||||| || ||||||||||| Sbjct 2111 TGTTGTTGCCGCTCATCCTTCACATCCGAGTCAGATCTCTGCTGGACTCAGTAATGGTAA 2170 Query 2392 GGTCATTGTCCTTCAGCCGTTGTGGAGTGGAGGATGGGGTGAAGCAGCTCCACTTGAAGA 2451 |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 2171 GGTCATCGTCCTTCAGCCATTGTGGAGTGGAGGATGGGGTGAAGCAGCTCCACTTGAAGA 2230 Query 2452 CAATGGAGATTATTCTAATGACTCAGATCATAGTTACTGACCA 2494 |||||||| |||||||||||||||||||||||||||||||||| Sbjct 2231 CAATGGAGGTTATTCTAATGACTCAGATCATAGTTACTGACCA 2273 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 98996546755 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5