BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25460.1
Length=1802
Score E
Sequences producing significant alignments: (Bits) Value
Ahg899984 jgi|Araly1|899984|Al_scaffold_0004_634 1814 0.0
> Ahg899984 jgi|Araly1|899984|Al_scaffold_0004_634
Length=1284
Score = 1814 bits (982), Expect = 0.0
Identities = 1171/1262 (93%), Gaps = 13/1262 (1%)
Strand=Plus/Plus
Query 110 ATGGCAAAGAAGGTGAGGAAGCTTCACGTGACGGTGAAGCCGGTGAGGCTTGATGGTTTA 169
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGCAAAGAAGGTAAGGAAGCTTCACGTGACGGTGAAGCCGGTGAGGCTTGATGGATTA 60
Query 170 CCGGCTATTCTCGGTGATGAAACGGCAGGAAAGAACCTTTCCGCGATGGTGGAGGTGAAA 229
||||||||||||||||||||||| ||||| |||||||||||||| ||||| |||||||||
Sbjct 61 CCGGCTATTCTCGGTGATGAAACCGCAGGGAAGAACCTTTCCGCTATGGTAGAGGTGAAA 120
Query 230 TGGAAGGGACCTGTCTCCGGTTTTGGATTGGGCTTCGTCCCATTCTATCGTTCTAATCGA 289
||||| ||||| ||||||||||||||||| ||||||||||| |||||||| || ||||||
Sbjct 121 TGGAAAGGACCGGTCTCCGGTTTTGGATTAGGCTTCGTCCCTTTCTATCGGTCGAATCGA 180
Query 290 CCGGTTAACCATACGAGCTCTAAACCGATTGCTTTAGGC-TCAAACCACGTAGAATGGGA 348
||||||||||||||||||||||||||||||||||||||| | || ||| |||||||||||
Sbjct 181 CCGGTTAACCATACGAGCTCTAAACCGATTGCTTTAGGCGT-AAGCCATGTAGAATGGGA 239
Query 349 GGAAGAGTTCGAACGCGTTTGTTGCATTGTTGGCCCATGGAACCTCTCCTTCAATGTCTT 408
||||| ||||||||| |||||||||| |||||||| ||||||||||| |||||||||||
Sbjct 240 AGAAGAATTCGAACGCATTTGTTGCATCGTTGGCCCGTGGAACCTCTCGTTCAATGTCTT 299
Query 409 CTACGGTGAGAATATGGACGCaaaaaacaaaaaGTCTTTGATCGGAAAAGCATCGTTGGA 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CTACGGTGAGAATATGGACGCAAAAAACAAAAAGTCTTTGATCGGAAAAGCATCGTTGGA 359
Query 469 TTTATCGGAGTTAGCGTCGAAACAAGAATCGACGGTGGAGAGAAAGCTTCCGATTCGGTC 528
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TTTGTCGGAGTTAGCGTCGAAACAAGAATCGACGGTGGAGAGAAAGCTTCCGATTCGGTC 419
Query 529 AAAGGGTTCCGTACTTTCGAAGGAAGCAACACTTGTGGTCAACGTGACTTTTTCTGAGGT 588
||| |||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||
Sbjct 420 AAAAGGTTCCGTACTTTCGAAGGAAGCAACTCTTTTGGTCAACGTGACTTTTTCCGAGGT 479
Query 589 AAGAACCGAACCAGACGACTTTATGCAACTTGGTCAGATCTCCGTTGACTCAGCAATTCC 648
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 480 AAGAACCGAACCAGACGACTTTATGCAACTTGGTCAGGTCTCCATTGACTCAGCAATTCC 539
Query 649 GAAGAAAAAGTCAACGAGTCGTCGCGGCGGTGGTA-GCCATTTCGACTCTTTTTCCTCCC 707
||||| | |||||||||||| |||||||||| || | |||| || || | ||| || |
Sbjct 540 AAAGAAGATGTCAACGAGTCGCCGCGGCGGTG-TAAGGGATTTTGATTCGTCTTCATCTC 598
Query 708 CAGCCACCGCGTCGAGTTCAGGCGGACGTAGCCCCGTAGTTGAAACCGGGTTATTTTCAA 767
| || || ||||| |||||||| ||||| |||||| | ||||||||||||| || |||||
Sbjct 599 CGGCAACTGCGTCAAGTTCAGGTGGACGGAGCCCCCTTGTTGAAACCGGGTCATCTTCAA 658
Query 768 GCCCGGATGAGAACCAGTCTGAACCGGGTCAAAAAGCCGGGTTTAATTGGTGGAAGAGAA 827
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 GCCCGGATGAGAACCAATCTGAACCGGGTCAAAAAGCCGGGTTTAATTGGTGGAAGAGAA 718
Query 828 GACGGTTAAGCTTTTCTATGACATGGAGAAGAGAACCGAGAGAGGATGAAGTTACGAAGA 887
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 719 GACGGTTAAGCTTTTCCATGACATGGAGAAGAGAACCGAGAGAGGATGAAGTTACAAAGA 778
Query 888 CATCAACAAAACCATCGGAGGAACTAGAAAAACCGGCGACGG-----A-G-A--TACCAA 938
|||||||||||||||||||||||| ||||||||||||||||| | | | || | |
Sbjct 779 CATCAACAAAACCATCGGAGGAACCAGAAAAACCGGCGACGGCGGCGACGGAGCTAACGA 838
Query 939 TCGAGGCAAACAAATGGGTAATGAAGGATTTAGTGAGCCGCGATGGAAAATCGAAGCTGA 998
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 839 TCGAGGCAAACAAATGGGTAATGAAGGATTTAGTGAGCCGCAATGGAAAATCGAAACTGA 898
Query 999 AATCGGAAGTTTACTTAGCGTCGATTGATCAAAGAAGCGAACAAGCCGCCGGAGAAGCAG 1058
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 AATCGGAAGTTTACTCAGCGTCGATTGATCAAAGAAGCGAACAAGCCGCCGGAGAAGCAG 958
Query 1059 CATGCGCGGCGGTTGCGGTGGTGGTGGCTCATTGGTTCCACGCGAATCCTAAGCTCATCA 1118
| |||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| |
Sbjct 959 CTTGCGCGGCGGTTGCAGTGGTGGTGGCGCATTGGTTCCATGCGAATCCTAAGCTCATAA 1018
Query 1119 ATCCTTCAGGAACAGCGTTCGATTCACTAATCACGCAAGGGTCTTCTTTATGGCAATCTC 1178
||||||||||||||| ||||||||| |||| |||||||| |||||||||||||||||||
Sbjct 1019 ATCCTTCAGGAACAGAGTTCGATTCGTTAATAACGCAAGGCTCTTCTTTATGGCAATCTC 1078
Query 1179 TTTGCGACAAAGAATCGTATCTAAGATTGTTTCCAAACAGGCATTTCGATCTGGAAACGA 1238
| |||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||
Sbjct 1079 TCTGCGACAAAGAATCGTATCTGAGATTGTTCCCAAACAAGCATTTCGATCTGGAAACGA 1138
Query 1239 TCGTTTCCGCAAATTTACGACCGGTTAGGGTTTGTACCGATAAATCGTTTACCGGGTTAT 1298
|||||||||| |||||||||||||||||||||||||| || |||||| |||||||||| |
Sbjct 1139 TCGTTTCCGCGAATTTACGACCGGTTAGGGTTTGTACTGAGAAATCGATTACCGGGTTTT 1198
Query 1299 TCAGCCCGGAGAGATTTGCTTCGTTGGATGGTCTGATGTCGTTTGATCAGATTTGGGACG 1358
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1199 TCAGCCCGGAGAGATTTGCTTCGTTGGATGGTCTAATGTCGTTTGATCAGATTTGGGACG 1258
Query 1359 AG 1360
||
Sbjct 1259 AG 1260
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67648275120
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5