BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G25460.1 Length=1802 Score E Sequences producing significant alignments: (Bits) Value Ahg899984 jgi|Araly1|899984|Al_scaffold_0004_634 1814 0.0 > Ahg899984 jgi|Araly1|899984|Al_scaffold_0004_634 Length=1284 Score = 1814 bits (982), Expect = 0.0 Identities = 1171/1262 (93%), Gaps = 13/1262 (1%) Strand=Plus/Plus Query 110 ATGGCAAAGAAGGTGAGGAAGCTTCACGTGACGGTGAAGCCGGTGAGGCTTGATGGTTTA 169 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1 ATGGCAAAGAAGGTAAGGAAGCTTCACGTGACGGTGAAGCCGGTGAGGCTTGATGGATTA 60 Query 170 CCGGCTATTCTCGGTGATGAAACGGCAGGAAAGAACCTTTCCGCGATGGTGGAGGTGAAA 229 ||||||||||||||||||||||| ||||| |||||||||||||| ||||| ||||||||| Sbjct 61 CCGGCTATTCTCGGTGATGAAACCGCAGGGAAGAACCTTTCCGCTATGGTAGAGGTGAAA 120 Query 230 TGGAAGGGACCTGTCTCCGGTTTTGGATTGGGCTTCGTCCCATTCTATCGTTCTAATCGA 289 ||||| ||||| ||||||||||||||||| ||||||||||| |||||||| || |||||| Sbjct 121 TGGAAAGGACCGGTCTCCGGTTTTGGATTAGGCTTCGTCCCTTTCTATCGGTCGAATCGA 180 Query 290 CCGGTTAACCATACGAGCTCTAAACCGATTGCTTTAGGC-TCAAACCACGTAGAATGGGA 348 ||||||||||||||||||||||||||||||||||||||| | || ||| ||||||||||| Sbjct 181 CCGGTTAACCATACGAGCTCTAAACCGATTGCTTTAGGCGT-AAGCCATGTAGAATGGGA 239 Query 349 GGAAGAGTTCGAACGCGTTTGTTGCATTGTTGGCCCATGGAACCTCTCCTTCAATGTCTT 408 ||||| ||||||||| |||||||||| |||||||| ||||||||||| ||||||||||| Sbjct 240 AGAAGAATTCGAACGCATTTGTTGCATCGTTGGCCCGTGGAACCTCTCGTTCAATGTCTT 299 Query 409 CTACGGTGAGAATATGGACGCaaaaaacaaaaaGTCTTTGATCGGAAAAGCATCGTTGGA 468 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 CTACGGTGAGAATATGGACGCAAAAAACAAAAAGTCTTTGATCGGAAAAGCATCGTTGGA 359 Query 469 TTTATCGGAGTTAGCGTCGAAACAAGAATCGACGGTGGAGAGAAAGCTTCCGATTCGGTC 528 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 TTTGTCGGAGTTAGCGTCGAAACAAGAATCGACGGTGGAGAGAAAGCTTCCGATTCGGTC 419 Query 529 AAAGGGTTCCGTACTTTCGAAGGAAGCAACACTTGTGGTCAACGTGACTTTTTCTGAGGT 588 ||| |||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||| Sbjct 420 AAAAGGTTCCGTACTTTCGAAGGAAGCAACTCTTTTGGTCAACGTGACTTTTTCCGAGGT 479 Query 589 AAGAACCGAACCAGACGACTTTATGCAACTTGGTCAGATCTCCGTTGACTCAGCAATTCC 648 ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 480 AAGAACCGAACCAGACGACTTTATGCAACTTGGTCAGGTCTCCATTGACTCAGCAATTCC 539 Query 649 GAAGAAAAAGTCAACGAGTCGTCGCGGCGGTGGTA-GCCATTTCGACTCTTTTTCCTCCC 707 ||||| | |||||||||||| |||||||||| || | |||| || || | ||| || | Sbjct 540 AAAGAAGATGTCAACGAGTCGCCGCGGCGGTG-TAAGGGATTTTGATTCGTCTTCATCTC 598 Query 708 CAGCCACCGCGTCGAGTTCAGGCGGACGTAGCCCCGTAGTTGAAACCGGGTTATTTTCAA 767 | || || ||||| |||||||| ||||| |||||| | ||||||||||||| || ||||| Sbjct 599 CGGCAACTGCGTCAAGTTCAGGTGGACGGAGCCCCCTTGTTGAAACCGGGTCATCTTCAA 658 Query 768 GCCCGGATGAGAACCAGTCTGAACCGGGTCAAAAAGCCGGGTTTAATTGGTGGAAGAGAA 827 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 659 GCCCGGATGAGAACCAATCTGAACCGGGTCAAAAAGCCGGGTTTAATTGGTGGAAGAGAA 718 Query 828 GACGGTTAAGCTTTTCTATGACATGGAGAAGAGAACCGAGAGAGGATGAAGTTACGAAGA 887 |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 719 GACGGTTAAGCTTTTCCATGACATGGAGAAGAGAACCGAGAGAGGATGAAGTTACAAAGA 778 Query 888 CATCAACAAAACCATCGGAGGAACTAGAAAAACCGGCGACGG-----A-G-A--TACCAA 938 |||||||||||||||||||||||| ||||||||||||||||| | | | || | | Sbjct 779 CATCAACAAAACCATCGGAGGAACCAGAAAAACCGGCGACGGCGGCGACGGAGCTAACGA 838 Query 939 TCGAGGCAAACAAATGGGTAATGAAGGATTTAGTGAGCCGCGATGGAAAATCGAAGCTGA 998 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| Sbjct 839 TCGAGGCAAACAAATGGGTAATGAAGGATTTAGTGAGCCGCAATGGAAAATCGAAACTGA 898 Query 999 AATCGGAAGTTTACTTAGCGTCGATTGATCAAAGAAGCGAACAAGCCGCCGGAGAAGCAG 1058 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 899 AATCGGAAGTTTACTCAGCGTCGATTGATCAAAGAAGCGAACAAGCCGCCGGAGAAGCAG 958 Query 1059 CATGCGCGGCGGTTGCGGTGGTGGTGGCTCATTGGTTCCACGCGAATCCTAAGCTCATCA 1118 | |||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| | Sbjct 959 CTTGCGCGGCGGTTGCAGTGGTGGTGGCGCATTGGTTCCATGCGAATCCTAAGCTCATAA 1018 Query 1119 ATCCTTCAGGAACAGCGTTCGATTCACTAATCACGCAAGGGTCTTCTTTATGGCAATCTC 1178 ||||||||||||||| ||||||||| |||| |||||||| ||||||||||||||||||| Sbjct 1019 ATCCTTCAGGAACAGAGTTCGATTCGTTAATAACGCAAGGCTCTTCTTTATGGCAATCTC 1078 Query 1179 TTTGCGACAAAGAATCGTATCTAAGATTGTTTCCAAACAGGCATTTCGATCTGGAAACGA 1238 | |||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||| Sbjct 1079 TCTGCGACAAAGAATCGTATCTGAGATTGTTCCCAAACAAGCATTTCGATCTGGAAACGA 1138 Query 1239 TCGTTTCCGCAAATTTACGACCGGTTAGGGTTTGTACCGATAAATCGTTTACCGGGTTAT 1298 |||||||||| |||||||||||||||||||||||||| || |||||| |||||||||| | Sbjct 1139 TCGTTTCCGCGAATTTACGACCGGTTAGGGTTTGTACTGAGAAATCGATTACCGGGTTTT 1198 Query 1299 TCAGCCCGGAGAGATTTGCTTCGTTGGATGGTCTGATGTCGTTTGATCAGATTTGGGACG 1358 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1199 TCAGCCCGGAGAGATTTGCTTCGTTGGATGGTCTAATGTCGTTTGATCAGATTTGGGACG 1258 Query 1359 AG 1360 || Sbjct 1259 AG 1260 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67648275120 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5