BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25470.1
Length=2808
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481398 jgi|Araly1|481398|fgenesh2_kg.4__458__AT2G25470.1 3024 0.0
Ahg476558 jgi|Araly1|476558|fgenesh2_kg.2__1688__AT1G74190.1 370 3e-101
> Ahg481398 jgi|Araly1|481398|fgenesh2_kg.4__458__AT2G25470.1
Length=2733
Score = 3024 bits (1637), Expect = 0.0
Identities = 2000/2177 (92%), Gaps = 18/2177 (1%)
Strand=Plus/Plus
Query 641 TGCAAGAACTACAGAATTTGATTAACTTGGAAGTCTTGGGTCTTGCTCAGAATCATGTAG 700
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 566 TGCAAGAACTAAAAAATTTGATTAACTTGGAAGTCTTGGGTCTTGCTCAGAATCATGTGG 625
Query 701 ACGGACCTATACCAATAGAAGTATTCTGTAA-ACTGAAGAATCTGCGGGATCTCGATCTC 759
||||||||||||||||||||||||||||||| | | ||||||||||| || ||| |||||
Sbjct 626 ACGGACCTATACCAATAGAAGTATTCTGTAATA-TTAAGAATCTGCGAGAGCTCTATCTC 684
Query 760 AAAGGAAATCATTTTGTAGGTCAAATACCTCTTTGTTTAGGTAGCTTGAAGAAGCTACGG 819
| |||||||||||||||||| || | ||||||||||||||| |||||||||||||||||
Sbjct 685 AGAGGAAATCATTTTGTAGGCCAGCTTCCTCTTTGTTTAGGTCGCTTGAAGAAGCTACGG 744
Query 820 GTTCTTGATCTCTCATCCAACCAATTAAGTGGAGA-TCTACCATCTAGTTTCAGTAGTCT 878
|||||||||||||||||||||||| |||||||| | ||||||||||||||||| ||| ||
Sbjct 745 GTTCTTGATCTCTCATCCAACCAACTAAGTGGA-ATTCTACCATCTAGTTTCAATAGCCT 803
Query 879 TGAGTCTCTCGAATATCTATCATTGTC-GGATAACAATTTCGATGGCTCATTCTCACTCA 937
||||||||||||||| ||||||||| | || |||||||| | || ||||||||| ||||
Sbjct 804 TGAGTCTCTCGAATACCTATCATTG-CTAGAGAACAATTTTGCTGACTCATTCTCGCTCA 862
Query 938 ATCCACTCACCAACCTTACAAACCTCAAGTTTGTTGTTGTACTACGGTTTTGCAGCTTGG 997
|||||||||||||||||||||| ||||||||| ||||||||||| | |||||||||||||
Sbjct 863 ATCCACTCACCAACCTTACAAAGCTCAAGTTTATTGTTGTACTAAGATTTTGCAGCTTGG 922
Query 998 AGAAAATCCCTTCCTTTCTCTTGTACCAGAAA-AAATTGCGTCTAGTTGATCTATCCAGC 1056
| |||||| ||||||||| ||||||| ||| || ||||||||||||||||| || |||
Sbjct 923 TGGGAATCCCGTCCTTTCTCGTGTACCA-AAAGAAGTTGCGTCTAGTTGATCTTTCGAGC 981
Query 1057 AACAATTTATCTGGAAATATTCCTACGTGGCTGCTGACGAATAATCCAGAACTTGAAGTC 1116
||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 982 AACAAATTATCTGGAAATATTCCTACCTGGCTGCTGACGAATAATCCAGGACTTGAAGTC 1041
Query 1117 CTACAGCTGCAGAATAATTCATTTACCATCTTTCCAATTCCTACAATGGTGCATAATTTG 1176
|||||| |||||||||||||||||| || |||| |||| |||||||| ||||||||||||
Sbjct 1042 CTACAGTTGCAGAATAATTCATTTATCAACTTTTCAATGCCTACAATAGTGCATAATTTG 1101
Query 1177 CAGATCTTTGATTTTTCAGCAAATAATATCGGGAAGTTCCCTGATAAGATGGACCATGCA 1236
|||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1102 CAGATCTTGGATTTCTCAGCAAATAATATCGGGAAGTTCCCTGATAAGATGGATCATGCG 1161
Query 1237 CTACCGAATCTGGTACGTTTAAATGGCTCGAATAATGGGTTCCAAGGTTATTTTCCAACG 1296
||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||
Sbjct 1162 CTACCGAATCTGGTACGTTTAAATGGCTCGAATAATGGGTTCCAAGGGTGTTTCCCAACG 1221
Query 1297 TCTATTGGTGAAATGAAGAATATTTCATTCTTGGACCTGTCTTATAATAACTTCTCTGGG 1356
||||||||||| ||||||||||| ||||||||||| || ||| |||||||||||||||||
Sbjct 1222 TCTATTGGTGAGATGAAGAATATATCATTCTTGGATCTATCTAATAATAACTTCTCTGGG 1281
Query 1357 AAGTTACCTAGAAGCTTTGTCACAGGTTGTGTTTCAATAATGTTCCTGAAGCTCTCTCAC 1416
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1282 AAGTTACCTAGAAGCTTTGTCACAGGTTGTGTTTCACTAATGTTCCTGAAGCTCTCTCAC 1341
Query 1417 AACAAATTTAGCGGCCGTTTTCTTCCAAGAGAAACAAACTTCCCTTCACTTGACGTGTTG 1476
|||||||||||||||| |||||| |||||||||||||||||| |||||||||| ||||||
Sbjct 1342 AACAAATTTAGCGGCCATTTTCTCCCAAGAGAAACAAACTTCACTTCACTTGAGGTGTTG 1401
Query 1477 AGAATGGATAACAACTTGTTTACGGGGAACATCGGAGGTGGTTTGAGTAACTCCACTATG 1536
||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||| |||
Sbjct 1402 AGAATGGATAACAACTTATTTACGGGGAAGATCGGAGGTGGTTTGCGTAACTCCACAATG 1461
Query 1537 TTGCGGATTCTAGACATGTCCAACAATGGGCTCTCTGGTGCTATTCCAAGATGGTTATTT 1596
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 1462 TTGCGGATTCTAGACATGTCCAACAATGGTCTCACTGGTGCTATTCCAAGATGGTTATTT 1521
Query 1597 GAGTTTCCTTATTTGGATTACGTATTGATATCCAACAATTTCTTAGAAGGTACGATACCT 1656
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1522 AAATTTTCTTATTTGGATTACGTATTGATATCCAACAATTTCTTAGAAGGTACGATACCA 1581
Query 1657 CCTTCTTTGTTGGGAATGCCTTTTCTTTCGTTTCTAGACCTTTCTGGAAACCAATTTTCT 1716
||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||
Sbjct 1582 CCTTCTTTGTTGGGAATGCCTTTTCTTTCGTTTTTGGATCTTTCTGGAAACCAATTTTCT 1641
Query 1717 GGAGCCTTACCGTCACATGTTGATAGCGAGCTCGGGATATATATGTTCCTACACAACAAC 1776
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1642 GGAGCCTTACCGTTACATGTTGATAGCGAGCTCGGGATATATATGTTCCTACAGAACAAC 1701
Query 1777 AACTTCACAGGGCCAATTCCAGACACATTGTTGAAAAGTGTCCAGATACTTGATCTGCGG 1836
||||||||||||||||| || || ||| | ||||||||||| ||||||||||||||||||
Sbjct 1702 AACTTCACAGGGCCAATCCCGGATACACTATTGAAAAGTGTTCAGATACTTGATCTGCGG 1761
Query 1837 AACAATAAACTCTCTGGGAGTATCCCGCAGTTTGACGATACACAGAGCATAAACATTCTT 1896
|||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||
Sbjct 1762 AACAATAAACTCTCTGGGAGTATCCCGCAGTTTGTTGATACAGAGAGCATAAATATTCTT 1821
Query 1897 TTGTTGAAG-GGAAACAATTTAACAGGGTCTATTCCACGGGAGCTTTGTGATTTGAGCAA 1955
|||||| || || |||||||||||||| ||||||||| ||||||||||||||||||| ||
Sbjct 1822 TTGTTG-AGTGGGAACAATTTAACAGGATCTATTCCAAGGGAGCTTTGTGATTTGAGAAA 1880
Query 1956 CGTCAGACTTC-TAGATCTTTCAGACAACAAGCTCAATGGTGTCATACCTTCATGCCTCT 2014
| | |||| || |||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1881 CATTAGAC-TCTTAGATCTTTCGGACAACAAGCTCAATGGTGTCATACCTTCATGCCTGT 1939
Query 2015 CTAATTTGTCATTTGGACGCTTACAAGAGGACGCAATGGCTCTCAATATTCCGCCCTC-T 2073
|||||||||||||||||||||||||||| ||| ||||||||||||| ||||| ||||| |
Sbjct 1940 CTAATTTGTCATTTGGACGCTTACAAGAAGACACAATGGCTCTCAACATTCCTCCCTCTT 1999
Query 2074 TTCTTGCAAACAAGCCTTGAGATGGAATTATACAAATCAACTTTTTTGGTAGATAAGATT 2133
||||| |||||||||||| || |||||||||||||||| ||||||||||||||||||||
Sbjct 2000 TTCTT-CAAACAAGCCTTAAGTTGGAATTATACAAATCCACTTTTTTGGTAGATAAGATC 2058
Query 2134 GAAGTGGACCGCTCTACTTATCAAGAAACTGAAATCAAATTTGCCGCAAAGCAAAGGTAT 2193
||||| ||||||||||| |||||||||||||| ||||||||||| || ||||||||||||
Sbjct 2059 GAAGTAGACCGCTCTACCTATCAAGAAACTGAGATCAAATTTGCAGCGAAGCAAAGGTAT 2118
Query 2194 GATTCTTATAGTGGAAGATCTGAGTTCAGCGAAGGAATTCTTCGTCTTATGTATGGGATG 2253
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2119 GATTCTTATAGTGGAAGATCTGAGTTCAGCGAAGGAATTCTTCGTCTTATGTACGGGATG 2178
Query 2254 GATTTGTCAAACAATGAATTAAGTGGTGTTATCCCGACAGAGCTTGGAGATCTCTTGAAA 2313
||| |||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 2179 GATCTGTCAAACAATGGATTAAGTGGTGTTATCCCAACAGAGCTTGGAGGTCTCTTGAAA 2238
Query 2314 CTACGAACCTTGAATCTATCTCACAATTCCTTGTTGGGATCTATACCATCCAGCTTCTCC 2373
||| ||||||||||||| |||||||||| ||||| | | |||||||||| |||||||||
Sbjct 2239 CTAAGAACCTTGAATCTGTCTCACAATTTCTTGTCGAGTTCTATACCATTTAGCTTCTCC 2298
Query 2374 AAACTGATAGATGTTGAGAGCCTTGATCTTTCTCATAACATGTTGCAGGGAAGCATTCCT 2433
||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2299 AAACTGAGGGATATTGAGAGCCTTGATCTTTCTCATAACATGTTGCAAGGAAGCATTCCT 2358
Query 2434 CAGCTACTCAGCAGCCTTACCTCTCTTGCTGTGTTCGACGTGTCTTCCAACAATTTATCA 2493
|| | ||| | ||||||||| ||||||||||||||||||||||||| |||||| |||| |
Sbjct 2359 CAACAACTTACCAGCCTTACTTCTCTTGCTGTGTTCGACGTGTCTTACAACAACTTATTA 2418
Query 2494 GGAATCATTCCCCAAGGAAGGCAGTTTAACACCTTTGAAGAGGAGAGCTACTTAGGAAAT 2553
||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||| |||
Sbjct 2419 GGAATCATTCCCCAAGGAAGGCAATTTGACACCTTTGAAGAGGACAGCTACTTAGGTAAT 2478
Query 2554 CCTCTGCTTTGTGGACCACCGACCAGTAGAAGTTGTGAGACTAATAAGAGTCCAGAGGAA 2613
||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||
Sbjct 2479 CCTCTGCTTTGTGGACCACCGACCAGTAGAAATTGTGAGACTAAGAAAAGTCCAGAGGAA 2538
Query 2614 GCAGATAATGGACAAGAAGAAGAAGACGATAAAGCTGCTATTGATATGATGGTTTTCTAT 2673
|||||||||||| |||||||||||| ||| |||||||||| || ||| |||| ||||||
Sbjct 2539 GCAGATAATGGAGGAGAAGAAGAAGATGATGAAGCTGCTATCGACATGGTGGTGTTCTAT 2598
Query 2674 TTTAGTACTGC-TTCAATTTATGTGACCGCATTGATAGGCGTTCTTGTACTTATGTGCTT 2732
||||||||||| || || ||||||||||||||||||||| |||||||||||||||||||
Sbjct 2599 TTTAGTACTGCATT-AACTTATGTGACCGCATTGATAGGTATTCTTGTACTTATGTGCTT 2657
Query 2733 TGATTGTCCTTGGCGTCGAGCATGGCTCCGCATTGTGGATGCTTTCATCGCCTCAGCT-A 2791
||||||| |||||||||||||||||||||||||||| |||| || ||||| | | | | |
Sbjct 2658 TGATTGTTCTTGGCGTCGAGCATGGCTCCGCATTGTCGATGGTTCCATCGTCGCTG-TGA 2716
Query 2792 AACATGTGTTGCCTTAG 2808
|| || |||||||||||
Sbjct 2717 AAAATATGTTGCCTTAG 2733
Score = 891 bits (482), Expect = 0.0
Identities = 544/574 (95%), Gaps = 4/574 (1%)
Strand=Plus/Plus
Query 1 ATGTTACTGTTGGGGCAGCTACATGGTTGCACAA-GCTGCATTGAGAAAGAAAGGGAAGC 59
|||||||||||||||||||||||||| |||| || |||||||| |||||||||| |||||
Sbjct 1 ATGTTACTGTTGGGGCAGCTACATGGATGCA-AAGGCTGCATTAAGAAAGAAAGAGAAGC 59
Query 60 TTTGTTAGAGCTCAAGAAATACTTGATGTCAAGGAGTCGAGAATCAGGGCTCGACTATGT 119
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TTTGTTGGAGCTTAAGAAATACTTGATGTCAAGGAGTCGAGAATCAGGGCTCGACTATGT 119
Query 120 TCTCCCTACTTGGACTAATGATACAAAGAGTGATTGCTGCCAGTGGGATGGCATTAAATG 179
||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 120 TCTCCCTACTTGGACTAATGACACAAAGAGCAATTGCTGCCAGTGGGATGGCATTAAATG 179
Query 180 CAATCGTACAAGCGGGCGGGTTATCGAGCTTTCTGTTGGTGATATGTACTTCAAAGAGAG 239
||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 180 CAATCGTACAAGCAGGCGGGTTATCGGGCTTTCTGTTGGTGATATGTACTTTAAAGAGAG 239
Query 240 CTCTCCTTTAAATCTTTCTTTGCTCCATCCCTTTGAAGAAGTTCGAAGTCTGAACTTATC 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CTCTCCTTTAAATCTTTCTTTGCTCCATCCCTTTGAAGAAGTTCGAAGTCTGAACTTATC 299
Query 300 TACGGAAGGATACAACGAATTCAATGGCTTCTTTGATGACGTAGAAGGTTATAGAAGTTT 359
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 300 TACTGAAGGATACAACGAATTCAATGGCTTCTTTGATGACGTAGAAGGTTATAGAAGCTT 359
Query 360 AAGTGGATTACGAAACTTGAAGATCATGGATCTCTCAACGAATTATTTCAACTACAGCA- 418
|||| ||||| |||||||| ||||||||||||||||||| |||||||||||| ||| ||
Sbjct 360 AAGTAGATTAAGAAACTTGCAGATCATGGATCTCTCAACAAATTATTTCAACAACACCAT 419
Query 419 CATTTCCTTTTCTTAATGCCGCTACATCACTTACAACTCTTATTCTCACGTATAACGAAA 478
| ||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||
Sbjct 420 C-TTTCCTTTTCTTAATGCCGCTACCTCACTTACAACTATTTTTCTCACGTATAACGAAA 478
Query 479 TGGATGGCCCTTTTCCTATCAAAGGACTAAAAGACTTGACAAACTTGGAACTGCTGGATT 538
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TGGATGGACCTTTTCCTATTAAAGGACTAAAAGACTTGACAAACTTGGAACTGCTGGATT 538
Query 539 TGAGAGCAAACAAACTAAACGGCTCCATGCAAGA 572
|||||||||||||| |||| ||||||||||||||
Sbjct 539 TGAGAGCAAACAAATTAAAAGGCTCCATGCAAGA 572
> Ahg476558 jgi|Araly1|476558|fgenesh2_kg.2__1688__AT1G74190.1
Length=2900
Score = 370 bits (200), Expect = 3e-101
Identities = 525/673 (78%), Gaps = 57/673 (8%)
Strand=Plus/Plus
Query 1 ATGTTACTGTTGGGGCAGCTACATGGTTGCACAAGCTGCATTGAGAAAGAAAGGGAA-GC 59
||| ||||| |||||||| ||||||| | || ||| || ||||| ||||||| |||| ||
Sbjct 43 ATGCTACTGATGGGGCAGTTACATGGATACAAAAGTTGTATTGATAAAGAAA-GGAACGC 101
Query 60 TTTGTTAGAGCTCAAGAAATACTTGATGTCAAGGAGTCG-AG-A-ATCAGGGCTCGACTA 116
|||||| ||||||| ||||||| |||| ||||| | | | || | | || | |||||
Sbjct 102 TTTGTTCGAGCTCAGGAAATACATGATCTCAAGAACT-GAAGAAGACCA-ATC-CGACTC 158
Query 117 TGTTCTCCCTACTTGGACTAATGATACAAAGAGTGATTGCTGCCAG-TGGGATGGCATTA 175
|||||||||||||||||| |||||||||| ||||||||||||| | ||| | ||| ||
Sbjct 159 TGTTCTCCCTACTTGGACCAATGATACAACCAGTGATTGCTGCC-GATGGAAGGGCGTTG 217
Query 176 AATGCAATCGTACAAGCGGGCGGGTTATCGAGCTT-TCTGTTGGT-GATATGTA-CTTCA 232
||||||||| |||||| ||||| | ||||||| || ||||| ||| || | | | |
Sbjct 218 CGTGCAATCGTGTAAGCGGACGGGTGACCGAGCTTGCCT-TTGGTGGAT-TG-AGCCTGA 274
Query 233 AAGA-GA-GCTCTCCTTTAAATCTTTCTTTGCTCCATCCCTTTGAAGAAGTTCGAAGTCT 290
|||| | |||||| |||| || |||||| | |||||||||||||| |||||||||||
Sbjct 275 AAGATAATTCTCTCC--TAAACCTCTCTTTGTTGCATCCCTTTGAAGATGTTCGAAGTCT 332
Query 291 GAACTTATCTACGGAAGGATACAACGAATTCAATGGCTTCTTTGATGACGTAGAAGGTTA 350
||||||| | | || | | | | | ||||| |||||| |||||||| || ||||||||
Sbjct 333 GAACTTA--T-C--AA-GCT-CCA-G-ATTCAGTGGCTTGTTTGATGATGTGGAAGGTTA 383
Query 351 TAGAAGTTTAAGTGGATTACGAAACTTGAAGA-TCATGGATCTCTCAACGAATTATTTCA 409
|| ||| | || ||||| |||| ||| ||| || ||||||| || | ||| | ||||
Sbjct 384 TAAAAGCCTCAGAAGATTAAGAAAGTTGGAGATTC-TGGATCTTTCTTCAAATAAATTCA 442
Query 410 ACT-ACAGCA-CATTTCCTTTTCTTAATGCCGCTACATCACTTACAACTCT-TATTCTCA 466
| | |||||| | |||| |||||||| ||||||||||||||| |||||||| | |||| |
Sbjct 443 A-TAACAGCATC-TTTCATTTTCTTAGTGCCGCTACATCACTCACAACTCTGT-TTCTTA 499
Query 467 CGTATAACGAA-ATGGATGGCCCTTTTCCTATC-AAAGGACTAAAAGACTTGACAAACTT 524
|| || || |||| |||| |||||||| | |||| ||| | ||| |||||||||||
Sbjct 500 GGTCCAA-TAACATGGTTGGCTCTTTTCCT-GCTAAAGAACTTAGAGATTTGACAAACTT 557
Query 525 GGAACTGCTGGATTTGAG-AGCAAACAAACTAAACGG---C-T-CC-ATGCAAGAGTTAA 577
|||| | || || |||| || ||||| | | ||||| | | || || |||||||| |
Sbjct 558 GGAATTACTAGACCTGAGTAG-AAACAGATTTAACGGCTCCATACCAATACAAGAGTT-A 615
Query 578 TTC-A-TCTGAA-AAAGCTGAAAGCTCTAGATCTAAGCT-CCAATAAATTTTCTAGCTCA 633
|| | ||| || |||||||||||||| |||||||| | |||||||||||||||||||
Sbjct 616 -TCTAGTCT-AAGGAAGCTGAAAGCTCTGGATCTAAG-TGGCAATAAATTTTCTAGCTCA 672
Query 634 ATGGAATTGCAAG 646
|||||||||||||
Sbjct 673 ATGGAATTGCAAG 685
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105967061590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5