BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25480.1
Length=1722
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481399 jgi|Araly1|481399|fgenesh2_kg.4__459__AT2G25480.1 2002 0.0
Ahg491495 jgi|Araly1|491495|fgenesh2_kg.7__928__AT4G32330.1 501 7e-141
> Ahg481399 jgi|Araly1|481399|fgenesh2_kg.4__459__AT2G25480.1
Length=1542
Score = 2002 bits (1084), Expect = 0.0
Identities = 1415/1565 (90%), Gaps = 62/1565 (4%)
Strand=Plus/Plus
Query 75 CAAATCCTTCTC-CTCCATTGAGACAGTGTACTTCTGCTTCAATGGACATTTGATATCAT 133
|||||||||||| | ||||||| ||||| ||||| |||||||||||||||||||| ||||
Sbjct 1 CAAATCCTTCTCGC-CCATTGATACAGTCTACTTGTGCTTCAATGGACATTTGATTTCAT 59
Query 134 CAAATCCTGCGTCAGTTTACGAATGGACTCTGAAAGCGTCGTAGCTGCTGACGGTGCGGA 193
||||||||| || ||||||| |||||| || | | |||||||||||||| |||||
Sbjct 60 CAAATCCTGAGTTAGTTTACCAATGGA--CT-----C-T-GTAGCTGCTGACGGGGCGGA 110
Query 194 TTGTGCTATTGCAAATGGTGAAGTGACAATGGAAGGAGACAGTAGTAATGGAAATGGTGG 253
|||||||||| ||||||||| |||||||||||||||| |||||||||||||| |||
Sbjct 111 TTGTGCTATTTCAAATGGTGGTTTGACAATGGAAGGAGATAGTAGTAATGGAAA---TGG 167
Query 254 TACTTCAGAGAATTTGGAATGTTGTTCTACTCAGCATCCTATGGAGGCATCTGAGGGCAC 313
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 168 TACTTCGGAGAATTTGGAAGGTTGTTCTACTCAGCATCCTATGGAGGCATCTGAGGGCAC 227
Query 314 ACAGAATGAACAAGTGGATGATTCAAAACAGATGAGAGGACAAAAGGTGCAAGGAAGGGT 373
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 228 ACAGAATGAACAAGTGGATGATTCAAAACAGATGAGAGGACAAAAGGTGCAAGGAAAGGT 287
Query 374 CAAGCATGAGAAGACCTCTGGAGGCAAGAATATTCCATCAGTCTTGGTGAAGAAGAAAAA 433
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 288 CAAGCATGAGAAGACCTCTGGGGGCAAGAATATTCCATCAGTCTTGGTGAAGAAGAAAAG 347
Query 434 AGATGGGAAAGTGGTGGCATCAAATGGTTCTGTTGCTCCAAACGTAAAGCCTGTAAAGTC 493
|||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||
Sbjct 348 AGATGGGAAAGTGGTGGCATCAAATGGTTCGGTTGCTCCAAACGTACCTCCCGTAAAGTC 407
Query 494 TCCTAAGAGCAAATCGCTCAATGGTAGAGAGGCTCATGTCACGAAGCATGGGAACCATGA 553
||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 408 TCCTAAGAGCAAATCGCTCAATGTTAGAGAGGCTCATGTCACGAAGCATGGGAAGAATGA 467
Query 554 CTCT-CTACCAGCTGAAGGGACCAGGGACAAGCCAAAACTGAGGGAAACAAGGAAACAAG 612
|||| | ||||||||||| ||||||||||||||||||||||| || ||||||||||||||
Sbjct 468 CTCTAC-ACCAGCTGAAGCGACCAGGGACAAGCCAAAACTGATGGCAACAAGGAAACAAG 526
Query 613 TCAATGATACATCTGAAGATGATACACAGTATCCAAAAGAAGATGATGGCAAACCTCGTC 672
||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||
Sbjct 527 TCAATGATACATCTGAAGATGATACGCAGTCTCCAAAAGAAGAAGATGGCAAACCTCGTC 586
Query 673 GAGCTAGTGCACTTCCAAATTATGGATTCAGTTTTAGATGTGACCAACGAGCTgaaaaaa 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 GAGCTAGTGCACTTCCAAATTATGGATTCAGTTTTAGATGTGACCAACGAGCTGAAAAAA 646
Query 733 gaagagagttctattcaaagcttgaggaaaagatccatgcgaaagaagaagaaaagaaTA 792
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 647 GAAGAGAGTTCTATTCAAAGCTTGAGGAAAAAATCCATGCGAAAGAAGAGGAAAAGAATA 706
Query 793 CCGTACAAGCTAAGTCCAAGGAAACTCAAGAAGCTGAGCTTAAGATGCTAAGGAAGAGTC 852
| |||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 707 CTGTACAAGCCAAGTCCAAGGAAACCCAAGAAGCTGAGCTTAAGATGCTAAGGAAAAGTC 766
Query 853 TGAACTTCAAAGCCACACCTATGCCTACCTTCTATCAAGAACCTCAGCTACCTAAAACAG 912
|||||||||||||||| || ||||||||||||||||||||||| ||| ||||||||||||
Sbjct 767 TGAACTTCAAAGCCACGCCAATGCCTACCTTCTATCAAGAACCCCAGTTACCTAAAACAG 826
Query 913 AGTTAAAGAAGATAGCGATAACAAGACCAAAATCTCCAAAACTCGGGCGGAAGAAGACCA 972
|||||||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct 827 AGTTAAAGAAGATACCAACGACAAGACCAAAATCTCCAAAACTCGGGCGGAAGAAGACTG 886
Query 973 ATTCTCG-AGCAGATTCTGAAGAAGCCATTACTATTCAAACCCCTCGCT-TTGGTAGGTT 1030
| || || |||||||||||||||||||||||||||||||||||||| | |||||||| |
Sbjct 887 ACTC-CGGAGCAGATTCTGAAGAAGCCATTACTATTCAAACCCCTCT-TATTGGTAGGCT 944
Query 1031 GAGCTTAGATGAGAAAACTCCTAAAGATAACCCGGTTGTTGAAGGAAGTGTACCCGGTGA 1090
|||||||||||||| | ||||| | | | | | |||||||||| || | |||
Sbjct 945 GAGCTTAGATGAGAGAGCTCCT---G-T--C--G-TCA---AAGGAAGTGTTCCTGTTGA 992
Query 1091 GACCAAGAAGCCACCAGTGCGCAAGTCACTTCCCAGGTTGCCTTCAGAAAAGACAAATCT 1150
|||||||||||||||| |||| ||||||||||||||||||||||| |||||||||| |||
Sbjct 993 GACCAAGAAGCCACCAATGCGGAAGTCACTTCCCAGGTTGCCTTCCGAAAAGACAAGTCT 1052
Query 1151 GTCCAACGGGAAGGTGGCTCCAGCAAAAGCTGTAACAGCCTCAACAAAGGCAAAGTCGGA 1210
||| ||||||||||||||||||||||||||||| ||||||||||||||| |||| | ||
Sbjct 1053 GTCGAACGGGAAGGTGGCTCCAGCAAAAGCTGTGACAGCCTCAACAAAGACAAAACCCGA 1112
Query 1211 AAGAAAGAAACCAGATAAAGATGTGGATGACCTAAGCCAGTCAAGTCCTGTAGACGACAA 1270
||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||
Sbjct 1113 AAGAAAGAAACCAGATAAAGATGGGGATGCCCTAAGCCAGTCAAGTCCTGTAGGCGACAA 1172
Query 1271 TGCTGACCCAGAAGATTCACAAGAACAAGCTCCAAGAGTGAATGAAGACAGAAACGAATC 1330
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1173 TGCTGACCCAGAAGATTCAAAAGAACAAGCTCCAAGAGTGAATGAAGACAGAAACGAATC 1232
Query 1331 TCACATGGTAGTGGAAGTGGTTGCGGTTGAGCCTTAAAACCTACGGTATGATTCATGTAC 1390
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
Sbjct 1233 TCACATGGTAGTGGAAGTGGTTGCGGTTGAACCTTAAAACCTACGGTACGATTCATGAAT 1292
Query 1391 TAGTTAAGGAGCGAAAAAGGAACAGTAACAAGAAACAGTGAAAAATGGATGAAATCAAAC 1450
||||||||||||||||||| |||||| | ||| ||||||||||||||||||
Sbjct 1293 TAGTTAAGGAGCGAAAAAGAAACAGT-----G------TGATAAATGGATGAAATCAAAC 1341
Query 1451 TGTTTAATCAGAAGATGGACAAAAAGAGTGAAAGACAGAGATGCAAAATTGATGGTGTGC 1510
||||||||||||||||||||||| |||||||||| ||||||||||| |||||| |||||
Sbjct 1342 TGTTTAATCAGAAGATGGACAAA--GAGTGAAAGAAAGAGATGCAAATTTGATGCTGTGC 1399
Query 1511 T---C--CACAAGGTTGCTT-CT------ATATGTCATTCATGAGAGCTTCAATTGCGTC 1558
| | ||||||||||||| || |||| |||||| ||||||||||||||| ||
Sbjct 1400 TTTACTTCACAAGGTTGCTTGCTGCTTCTATATTTCATTCGTGAGAGCTTCAATTGTGTT 1459
Query 1559 GCATGATGTTTGG-TCGTAATGCTTAAATTCTGTTTGGTT-T--GTCGTCAAGATCTGTT 1614
|||||||||| || ||||||||||||| || ||||||||| | ||||| ||||||||||
Sbjct 1460 GCATGATGTT-GGATCGTAATGCTTAAGTTGTGTTTGGTTGTTTGTCGTAAAGATCTGTT 1518
Query 1615 TTTTC 1619
|||||
Sbjct 1519 TTTTC 1523
> Ahg491495 jgi|Araly1|491495|fgenesh2_kg.7__928__AT4G32330.1
Length=1643
Score = 501 bits (271), Expect = 7e-141
Identities = 587/734 (80%), Gaps = 44/734 (6%)
Strand=Plus/Plus
Query 434 AGATGGGAAAGTGGTGGCATCAAATGGTTCTGTTGCTCCAAACGTAAAGCCTGTAAAGTC 493
||||| ||||||| ||||||||||||||||||||||| | | | || | |||| |
Sbjct 457 AGATGCTAAAGTGGCAGCATCAAATGGTTCTGTTGCTCCTATTGCACAGACAACAAAGCC 516
Query 494 TCCTAAGAGCAAATCGCTCAATGGTAGAGAGGCTCATGTCACGAAGCATGGGAACCATGA 553
|| |||||||||||| |||||||| |||||||||| ||||| ||||| ||||| |||||
Sbjct 517 TCTTAAGAGCAAATCATTCAATGGTCGAGAGGCTCAAGTCACAAAGCAAGGGAAGCATGA 576
Query 554 CTCT-CTACCAGCTG-AAG-G--GACCAGGGACAA-GCCAAAACTGAG-GGAAACAAGGA 606
| || | |||||||| ||| | || | ||||||| | ||| | || || || ||
Sbjct 577 CCCTGC-ACCAGCTGAAAGTGCCGA-CGGGGACAAGGTGAAATCAAAGCCTCAA-AA-GA 632
Query 607 AACAAGTCAATGATACATCTGAAGATG--A-T-A--CA-C-AGTA-TCCAAAAGAAGATG 657
||||| | |||| ||||||||||||| | | | || | | || ||| |||| ||| |
Sbjct 633 AACAAACCCATGAGACATCTGAAGATGATACTCAGTCATCTAATAGTCCGAAAGCAGACG 692
Query 658 ATGGCAAACCTCGTCGAGCTAGTGCACTTCCAAATTATGGATTCAGTTTTAGATGTGACC 717
|||| |||||||| || | |||||||||||||||||||||||||||| | ||||||||
Sbjct 693 ATGGAAAACCTCGGAAAGTTGGTGCACTTCCAAATTATGGATTCAGTTTCAAATGTGACC 752
Query 718 AACGAGCTgaaaaaagaagagagttctat-tcaaagcttgaggaaaaga-tccatgcgaa 775
|||| |||||||| ||||||||||||||| | || ||| ||||| |||| || |||| ||
Sbjct 753 AACGGGCTGAAAAGAGAAGAGAGTTCTATGTTAA-GCTCGAGGAGAAGACTC-ATGCAAA 810
Query 776 agaagaagaaaagaaTACCGTACAAGCTAAGTCCAAGGAAACTCAAGAAGCTGAGCTTAA 835
|||||| |||| |||| | | ||||| |||||||||||||| ||||||||||||||||
Sbjct 811 AGAAGAGGAAATCAATAGCATGCAAGCCAAGTCCAAGGAAACACAAGAAGCTGAGCTTAG 870
Query 836 GATGCTAAGGAAGAGTCTGAACTTCAAAGCCACACCTATGCCTACCTTCTATCAAGAACC 895
|||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 871 GATGCTAAGGAAGAGTTTGAACTTCAAAGCCACACCTATGCCTAGCTTTTATCAAGAACC 930
Query 896 TCAGCTACCTAAAACAGAGTTAAAGAAGATAGCGAT-AACAAGACCAAAATCTCCAAAAC 954
||||| |||||||||||||||||||||||| | | ||| ||||| ||||| |||||||
Sbjct 931 TCAGCCGCCTAAAACAGAGTTAAAGAAGATACC-ACCAACGAGACCCAAATCACCAAAAC 989
Query 955 TCGGGCGGAAGAAGACCAATTCTCGAGCAGATTCTGAAGAAGCCATTACTATTCAAACCC 1014
||||||| |||||||| |||| ||| |||| ||||||| | || |||||||
Sbjct 990 TCGGGCGAAAGAAGACTGCTTCTGGAGTGGATTGTGAAGAA---A---CT---CAAACCC 1040
Query 1015 CTCGCTTTGGTAGGTTGAGCTTAGATGAGAAAACTCCTAAAGATAACCCGGTTGTTGAAG 1074
||||| |||||||| | ||| ||||||||| | || ||||||||||||| || |||
Sbjct 1041 CTCGCCTTGGTAGGCTAAGCCTAGATGAGAGAGCTTCTAAAGATAACCCAACTGCA-AAG 1099
Query 1075 G-AAGTGTACC--CGGTGAGACC--AAGAAGCCACCAGTGCGCAAGTCACTTCCCAGGTT 1129
| || | | || | || || | ||||||| ||| ||||||||||||||||| || ||
Sbjct 1100 GGAATTATGCCAACAGTT-GATCTTAAGAAGCAACCTGTGCGCAAGTCACTTCCAAGATT 1158
Query 1130 GCC-T-TCAGAAAA 1141
||| | ||||||||
Sbjct 1159 GCCATCTCAGAAAA 1172
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64601055520
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5