BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25482.1
Length=465
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932698 jgi|Araly1|932698|scaffold_400686.1 593 3e-169
> Ahg932698 jgi|Araly1|932698|scaffold_400686.1
Length=505
Score = 593 bits (321), Expect = 3e-169
Identities = 419/467 (90%), Gaps = 4/467 (1%)
Strand=Plus/Plus
Query 1 ATGGAAAATAAAACCATTTTCTTGGCATTGTTTTCAATCATGGTTTTGCTATCATATTTT 60
||||| |||||||||||| || || |||| |||||| | |||||||||||||||| ||||
Sbjct 21 ATGGAGAATAAAACCATTCTCATGACATTTTTTTCAGTTATGGTTTTGCTATCATTTTTT 80
Query 61 AATCCAAGTTTGGCCATAGCAGCCGATCTTGAGGAGATGCTAATCAACGAGTTTGATGTG 120
|||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 81 AATCAAAGTTTGGCCATAGCAGCCGATCTTGAAGAAATGCTAATCAACGAGTTTGATGTG 140
Query 121 GTGCTTAAACATTGGCCGAGCCCGGGTGATTATAATCTCAATGTTATCCGTGGACAACCA 180
|||||||||||||||||||| || ||||||||||||||||| ||||| ||||||||| ||
Sbjct 141 GTGCTTAAACATTGGCCGAGTCCAGGTGATTATAATCTCAACGTTATACGTGGACAATCA 200
Query 181 AGAAAACATCTCAAATATCTTCTTGATTGCGCAGTAAAAATGGGAGCTGGTGGAAATGAA 240
|||||||||||||||||||||||| | |||| |||||||||||| ||||||| | ||||
Sbjct 201 AGAAAACATCTCAAATATCTTCTTAACTGCGGTGTAAAAATGGGACCTGGTGGGACTGAA 260
Query 241 TGTAACATTGAA-ATAAGAGACGTATTTTCTCGGAACAAAAGTTTTTCGAAAGATTGTTG 299
|||||||||||| ||| |||||| | ||||||||||||||||| ||||| |||||||||
Sbjct 261 TGTAACATTGAATATA-GAGACGGAATTTCTCGGAACAAAAGTACTTCGAGAGATTGTTG 319
Query 300 TCGGGTGCTAGTGAAAGGTGGCA-GAAAATGCTACACAGAATGGATGAAAATGTTTTTTC 358
|| | || ||||||||| ||||| | || ||| ||||||||| |||||| ||||||| |
Sbjct 320 TCTGATGATAGTGAAAGCTGGCAAGCAA-TGCCACACAGAATTGATGAAGTTGTTTTTGC 378
Query 359 AATTCTATCAACTCAACCGTTTTAGTTCTAACGCGATGATCAAAACTAACGAAACATGGA 418
|||||||||||||||| |||||||||||||| || ||||||||||||||||||| |||||
Sbjct 379 AATTCTATCAACTCAAACGTTTTAGTTCTAAAGCTATGATCAAAACTAACGAAATATGGA 438
Query 419 ACAAATGTTCTAATGGAACTGAATCTATTTCACCATTTTCTGGTTAA 465
||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 439 ACAAATGTTCTAATGAAACTGAAGCTATTTCACCATTTTCTGGTTAA 485
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16826614749
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5