BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25490.1
Length=2787
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481400 jgi|Araly1|481400|fgenesh2_kg.4__460__AT2G25490.1 4135 0.0
> Ahg481400 jgi|Araly1|481400|fgenesh2_kg.4__460__AT2G25490.1
Length=2714
Score = 4135 bits (2239), Expect = 0.0
Identities = 2578/2739 (94%), Gaps = 34/2739 (1%)
Strand=Plus/Plus
Query 55 tttttttttGCCCTATCCATAGGGTTTTCTTCGCTC-TCTATCTCCTCGATCTTCATGTG 113
|||||||||||||||||||||||||||||||| ||| ||| ||| | ||||||||||||
Sbjct 1 TTTTTTTTTGCCCTATCCATAGGGTTTTCTTCTCTCGTCTCGCTCTTTGATCTTCATGTG 60
Query 114 CATCTCTCTCTTTGGTATAATCGGAGCTAATTCGTTCGTTTTCTTCTTCATCTTCGTCGG 173
|||||||||||||| ||||||||||||||||| ||| ||||||||||| ||| ||||| |
Sbjct 61 CATCTCTCTCTTTGCTATAATCGGAGCTAATTTGTTTGTTTTCTTCTTAATCGTCGTCAG 120
Query 174 ATCTCTCTTTTTTGCTCTTTCCCACGGGTTTTCGCTTGAGAAATCAAGCGTTTTCGTTTT 233
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 121 ATCTTTCTTTTTTGCTCTTTCCCACTGGTTTTCGCTTGAGAAATCAAGCGTTTTCGTTTT 180
Query 234 TCCTGGGAGTTTTGAGCTCAAATCATGTCTCAGATCTTTAGTTTTGCCGGTGAAAATGAT 293
||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||
Sbjct 181 TCCTGGGAGTTTTGAGCTCAAATCATGTCTCAGATCTATAGTTTCGCTGGTGAAAATGAT 240
Query 294 TTTTACCGTCGTGGCGCAATATACCCAAACCCAAAGGATGCTAGTCTTTTGTTATCGCTT 353
||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 241 TTTTACCGTCGCGGCGCAATATACCCAAACCCGAAGGATGCTAGTCTTTTGTTGTCGCTT 300
Query 354 GGTAGTTTCGCT-GATGTTTATTTCCCTCCAAGCAAGAGATCACGTGTTGTTGCACCTAC 412
|||||||||| | ||||| ||||||||||| || |||||||| ||||| |||||||||||
Sbjct 301 GGTAGTTTCG-TGGATGTCTATTTCCCTCCTAGTAAGAGATCGCGTGTCGTTGCACCTAC 359
Query 413 GATCTTCAGTGCTTTCGAGAAAAAGCCAGTTTCCATTGATGTGCTACCAGATGAGTGTCT 472
| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 360 GGTCTTCAGTGGTTTCGAGAAAAAGCCAGTTTCCATTGATGTGCTTCCAGATGAGTGCCT 419
Query 473 TTTTGAGATCTTTAGGCGTTTGTCTGGACCACAAGAGAGGAGTGCTTGCGCTTTTGTCTC 532
|||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||
Sbjct 420 TTTTGAGATCTTTAGGCGGTTGCCTGGACCGCAAGAGAGGAGTGCTTGCGCTTTTGTCTC 479
Query 533 CAAACAGTGGCTTACGCTTGTAAGTAGCATCCGTCAAAAGGAGATTGATGTTCCTTCCAA 592
||||| |||||||||||||| ||||| ||||| |||| |||| |||||||| |||||||
Sbjct 480 GAAACATTGGCTTACGCTTGTGAGTAGTATCCGGCAAACGGAGCTTGATGTTTCTTCCAA 539
Query 593 GATAACTGAAGATGGTGATGATTGTGAAGGGTGTTTGTCTAGGAGCTTAGATGGGAAGAA 652
| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 540 CAAAACTGAAGATGGTGATGATTGTGAAGGGTGTTTGTCTAGGAGCTTAGATGGCAAGAA 599
Query 653 GGCAACAGATGTTAGATTGGCAGCAATTGCTGTTGGAACTGCTGGTCGTGGGGGACTTGG 712
|||||||||||||||| | || |||||||||||||| || ||||||||||||||||||||
Sbjct 600 GGCAACAGATGTTAGACTAGCTGCAATTGCTGTTGGGACAGCTGGTCGTGGGGGACTTGG 659
Query 713 AAAATTGTCGATTCGAGGTAGCAACTCTGCTA--AA-GTTTCAGATCTTGGTCTTCGGTC 769
|||| |||| ||||| || |||| |||| || || |||||||||||||||||| ||||
Sbjct 660 AAAACTGTCTATTCGGGGAAGCAGTTCTGGTAGCAAGGTTTCAGATCTTGGTCTTAGGTC 719
Query 770 TATTGGTCGTAGCTGCCCTTCTCTCGG-GTCTCTTTCACTGTGGAACGTTTCTACCATTA 828
|||||||| |||||||||||| | || ||||||||| || |||||| ||||||||||||
Sbjct 720 AATTGGTCGGAGCTGCCCTTCT-TTGGCGTCTCTTTCTCTATGGAACCTTTCTACCATTA 778
Query 829 CTGACAATGGACTTTTGGAGATTGCTGAGGGTTGTGCTCAACTTGAGAAGCTTGAGCTGA 888
|||||||||| || ||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 779 CTGACAATGGCCTCTTGGAGATTGCTGAGGGTTGTCCTCAACTTGAGAAGCTTGACCTGA 838
Query 889 ACCGCTGCTCTACAATCACTGACAAGGGTTTGGTAGCTATTGCTAAGAGCTGCCCCAACT 948
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 839 ACCGATGCTCTACAATCACTGACAAGGGTTTGGTTGCTATTGCTAAGAGCTGCCCTAACT 898
Query 949 TGACTGAGCTGACATTGGAGGCTTGTTCAAGAATTGGAGATGAGGGTTTGCTAGCCATTG 1008
||| ||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||
Sbjct 899 TGAGTGAGCTGACATTGGAGGCTTGTTCAAGTATTGGAGATGAGGGTCTGCAAGCCATTG 958
Query 1009 CAAGATCCTGCTCCAAGCTGAAGTCAGTCTCGATCAAGAACTGTCCTCTTGTCAGGGATC 1068
|| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 959 CACGATCCTGCTGCAAGCTGAAGTCAGTATCGATCAAGAACTGTCCTCTTGTCAGGGATC 1018
Query 1069 AAGGAATCGCCTCTCTACTGTCTAACACCACCTGTTCCT-TGGCAAAACTTAAGCTTCAG 1127
||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||
Sbjct 1019 AAGGAATCGCCTCTCTACTGTCTAACACCACATGTT-CTCTGGCAAAACTTAAGCTTCAG 1077
Query 1128 ATGCTGAATGTCACTGATGTGTCTCTTGCTGTTGTGGGTCATTACGGCTTGTCGATCACT 1187
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1078 ATGCTGAATGTCACTGATGTGTCTCTGGCTGTTGTGGGTCATTACGGCTTGTCGATCACT 1137
Query 1188 GATCTTGTGCTCGCTGGATTATCACACGTGAGCGAGAAGGGATTCTGGGTCATGGGAAAT 1247
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 GATCTTGTACTCGCTGGATTATCACACGTGAGCGAGAAGGGATTCTGGGTCATGGGAAAT 1197
Query 1248 GGTGTCGGGCTGCAAAAATTAAACTCTCTGACCATCACAGCCTGCCAAGGAGTGACTGAC 1307
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1198 GGTGTCGGGCTTCAAAAATTAAACTCTCTGACCATCACAGCCTGCCAGGGAGTGACTGAC 1257
Query 1308 ATGGGGCTTGAATCTGTTGGAAAGGGCTGCCCGAACATGAAAAAGGCGATCATCAGTAAA 1367
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 ACGGGGCTTGAATCTGTTGGAAAGGGCTGCCCGAACATGAAAAAGGCGATCATCAGTAAA 1317
Query 1368 TCCCCTTTGTTATCTGACAACGGGTTGGTCTCTTTTGCAAAAGCTTCTTTATCACTTGAG 1427
|||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 1318 TCCCCTTTGTTATCCGACAATGGGTTGGTCTCTTTTGCAAAAGCTTGTTTATCACTTGAG 1377
Query 1428 AGTCTTCAGCTTGAAGAATGCCACAGGGTTACCCAATTTGGGTTTTTTGGTTCCCTTTTG 1487
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1378 AGTCTTCAGCTTGAAGAATGCCACAGAGTTACCCAATTTGGGTTTTTTGGTTCCCTTTTG 1437
Query 1488 AACTGTGGTGAAAAGTTGAAGGCTTTCTCTCTGGTGAACTGTTTGAGTATTAGAGATCTC 1547
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1438 AACTGTGGTGAAAAGTTGAAGGCTTTCTCTCTGGTGAACTGTTTGAGCATTAGAGATCTC 1497
Query 1548 ACCACAGGATTGCCTGCTTCATCTCATTGCAGCGCTCTGCGCTCTTTGTCTATTCGTAAC 1607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 ACCACAGGATTGCCTGCTTCATCTCATTGCAGCGCTCTGCGCTCTTTGTCTATTCGTAAC 1557
Query 1608 TGCCCTGGCTTTGGTGATGCAAATCTTGCAGCCATCGGGAAGTTGTGCCCTCAGCTCGAG 1667
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 TGTCCTGGCTTTGGTGATGCAAATCTTGCAGCCATCGGGAAGTTGTGCCCTCAGCTCGAG 1617
Query 1668 GATATTGATCTGTGTGGGCTCAAGGGGATAACAGAGTCTGGTTTCCTACATCTGATTCAG 1727
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1618 GATATTGATCTGTGTGGGCTCAAGGGGATAACAGAGTCTGGTTTCCTACATCTAATTCAG 1677
Query 1728 AGCTCTCTTGTGAAGATCAACTTCAGTGGTTGTTCCAATTTGACTGATAGAGTGATCTCT 1787
||||||||||||||| |||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 1678 AGCTCTCTTGTGAAGGTCAACTTCAGTGGTTGTTCCAACTTGACCGACAGAGTGATCTCT 1737
Query 1788 GCCATCACTGCTCGTAACGGGTGGACTCTTGAAGTCTTAAACATCGATGGATGTTCCAAT 1847
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1738 GCCATCACTGCTCGTAACGGGTGGACTCTCGAAGTCTTAAACATCGATGGATGTTCCAAT 1797
Query 1848 ATCACTGACGCCAGCCTGGTCTCCATTGCAGCAAACTGCCAGATTCTCAGTGATTTGGAT 1907
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1798 ATCACTGACGCCAGCCTGGTCTCCATTGCAGCAAACTGCCAGATTCTCAGTGATTTGGAT 1857
Query 1908 ATTTCGAAATGCGCAATCTCAGATTCAGGGATTCAAGCATTGGCCTCCTCTGATAAGCTC 1967
||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||
Sbjct 1858 CTTTCGAAATGCGCAATCTCAGATTCAGGGGTTCATGCATTGGCTTCCTCTGATAAGCTC 1917
Query 1968 AAACTGCAGATCCTATCAGTTGCAGGTTGCTCTATGGTTACAGACAAGAGCTTGCCAGCC 2027
|||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1918 AAACTGCAGATCCTTTCAGTTGCAGGTTGCTCTATGGTGACAGACAAGAGCATGCCAGCC 1977
Query 2028 ATCGTCGGGTTGGGTTCCACTCTATTGGGATTAAACCTCCAACAGTGTCGATCCATTTCC 2087
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 1978 ATCGTCGGGTTGGGTTCCACTTTATTGGGATTAAACCTCCAACAGTGTCGATCCATCTCC 2037
Query 2088 AATTCCACTGTCGACTTCTTAGTCGAGCGTCTTTACAAATGTGACATCCTCTCCTGATCA 2147
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2038 AATTCCACTGTCGACTTCTTAGTCGAGCGCCTTTACAAATGTGACATCCTCTCCTGATCA 2097
Query 2148 ACAATTCCACTGTCGACCTCTCCACTTATAATGTAAGGTATTTTAGTCCGTCCAAGTTCG 2207
|||||||||| ||||||||||||| |||||||||||||||||||||||||||| || ||
Sbjct 2098 TCAATTCCACTATCGACCTCTCCACCTATAATGTAAGGTATTTTAGTCCGTCCATGTCCG 2157
Query 2208 TTTATCAAGTCTCAACTCTTTTTCAGGCTCTGTGATCTACGCGTCCCTCTCGCTAGGCTC 2267
|||||||||| |||||| ||||||||||||||||||||||| ||||||| | | || |
Sbjct 2158 TTTATCAAGTGTCAACTGTTTTTCAGGCTCTGTGATCTACGTGTCCCTC-C-C--GG-T- 2211
Query 2268 GGTACCCGgttttccttcttttttccaagcagttcgcttccggtttctttttttccagtc 2327
| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2212 --T------TT--CCTTCTTTTTTCCAAGCAGTTCGCTTCCGGTTTCTTTTTTTCCAGTC 2261
Query 2328 aatggtttttttgcagggtttcctttttATCAAGG-AAACTCTAACTTATCTCGAAATCG 2386
|||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 2262 AATGGTTTTTTTGCGGGGTTTCCTTTTTATCAAGGGAAACTCTAGCTTATCTCGAAATCG 2321
Query 2387 GAAGGTTGTGTGTTGCTTGAGAATATATTTACCGGGTAGACGAGATTTTAGGGTTTATCA 2446
|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2322 GAAGGTTGTGCGTTGCTTGAGAATATATTTACCGGGTATCCGAGATTTTAGGGTTTATCA 2381
Query 2447 TCTCCTGTTTCTTGCTGCTTTGGTGTCTTTTACGAGCCAGTTATCTATTTTATCCCCGTC 2506
|||||||||||||||| || |||||||||||||||||||||||||||||||| | ||||
Sbjct 2382 TCTCCTGTTTCTTGCT--TT-GGTGTCTTTTACGAGCCAGTTATCTATTTTATGCGCGTC 2438
Query 2507 GTTTGTCTTTGTTGGGTTTGGTTTTCCTCGGAAGGGTTTTGTATGATATGTACGGGTTCA 2566
||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||| |
Sbjct 2439 GTTTGTCTTTGTTTGGTTTGGTTTTCCTCGGAAGGGTCTTGTATGATTTGTACGGGTTTA 2498
Query 2567 GGTTTGGTTCAGGCCTTGGTTCTCTCAGAGGTTTGCTCTGGCTTTTGTTGCAACAACTCT 2626
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2499 GGTTTTGTTCAGGCCTTGGTTCTCTCAGAGGTTTGCTCTGGCTTTTGTTGCAACAACTCT 2558
Query 2627 ATTAAAGAGttttttttgggtttttttttttGCCAGAGCCCTCGtttttttt-CCAGGCA 2685
||||||||||||||| || || ||||||| ||||||||||||||||||||| |||||||
Sbjct 2559 ATTAAAGAGTTTTTTGTG--TTATTTTTTT-GCCAGAGCCCTCGTTTTTTTTTCCAGGCA 2615
Query 2686 CTGTATTACAATCTGTATGAACACTGTACTAAATTATGTAATGCCCTTTGGGATGGTTTA 2745
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2616 CTGTATTACAATCTGTATAAACACTGTACTAAATTATGTAATGCCCTTTGGGATGGTTTA 2675
Query 2746 ATGAGTATTGAATAAAATTCTCATTTCGTTGTATATTAC 2784
||||||||||||||||||||||||||||||||||| |||
Sbjct 2676 ATGAGTATTGAATAAAATTCTCATTTCGTTGTATAATAC 2714
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105167166445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5