BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25530.1
Length=2128
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481404 jgi|Araly1|481404|fgenesh2_kg.4__464__AT2G25530.1 2911 0.0
> Ahg481404 jgi|Araly1|481404|fgenesh2_kg.4__464__AT2G25530.1
Length=1905
Score = 2911 bits (1576), Expect = 0.0
Identities = 1802/1912 (94%), Gaps = 12/1912 (1%)
Strand=Plus/Plus
Query 205 ATGCCTAATGTTTCTCAGATCTCTACTGTTCTACGTCTAGCGTTTTCTTGTAAAAGAAGA 264
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1 ATGCCTAATGTTTCTCAGATCTCTACTGTTCTACGTCTAGGGTTTTCTTCTAAAAGAAGA 60
Query 265 CTCTCCAATGGCTTACACTTCGTTGCTCGTTCCTATTCCACCTCTGATCCTCCCAAACAA 324
|||||||||||||| ||||||||| ||||||| ||||||||||||||||||||| | ||
Sbjct 61 CTCTCCAATGGCTTCCACTTCGTTTCTCGTTCTTATTCCACCTCTGATCCTCCC--A-AA 117
Query 325 CCATCAGGTCCACTGACGAATTACTCTAAGTTAGTGGAGCAAGGGAGGTTACAACATGAT 384
||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 118 CCATCAGGTCCACTGACGAGTTACAGTAAGTTAGTGGAGCAAGGGAGGTTACAACATGAT 177
Query 385 CCATACCAAGAGAAAGTTGTTTCGGCATTCGAAAATTTGTTTGGAAGATTGGAACATTTC 444
|||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 178 CCATTCCAAGAGAAAGTTGTTTCAGCATTTGAAAATTTGTTTGGAAGATTGGAACATTTC 237
Query 445 GAGAAGCAAATGGAGGATTATCATGTGAGATTAGCagagtgggagaagaagagagaggag 504
|||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 238 GAGAAGGAAATGGAAGATTATCATGTGATATTAGCAGAGTGGGAGAAGAAGAGAGAGGAA 297
Query 505 gaacgaagaaagctaatggtggaagaagctgagaagaaggaagatgatggaaTGTGGGCA 564
|| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 298 GAGCGGCGAAAGCTAATGGTGGAAGAAGCTGAGAAGAAGGAAGAAGATGGAATGTGGGCA 357
Query 565 TCTGTGAATAAGCA-GGGACAAAAGCTTTTGGGAAGATGGGTATTAGGGCGGAGACAGAT 623
||||||||||| || ||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 358 TCTGTGAATAAACATGGG-CAAAAGCTTTTGGGAAGATGGGTATTAGGGCGAAGACAGAT 416
Query 624 GAATGTAGAACCTGGAGTTGGTAAATGGGTATCGTACCTTAACCGAGAGAGAAAATTGGA 683
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 417 GAATGTAGAACCTGGAGTTGGTAAATGGGTATCGTATCTTAACCGAGAGAGAAAATTGGA 476
Query 684 CTCGATTGTCGGTTCTCGTCCCGCGGTACCACCAGCTCCAAAAGGATTATATATCTATGG 743
|||||| |||||||||||||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct 477 CTCGATCGTCGGTTCTCGTCCTGCGGTACCACCAGCTCCCAAAGGGTTATATATCTATGG 536
Query 744 AAATGTAGGATGTGGCAAGACTATGTTGATGGATATGTTTTATGGTGCTACTGATGGGAT 803
||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 537 AAATGTAGGATGTGGCAAGACTATGTTGATGGATATGTTTTATGGCGCCACGGATGGGAT 596
Query 804 CATTAGACATAGACAACGGTTTCACTTTCATGAGGCTATGCTGAAGATAAATGAACAAAT 863
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 597 CATTAGACATAGACAACGGTTTCACTTTCATGAGGCTATGCTAAAGATAAATGAACAAAT 656
Query 864 GCACAAGTATTGGAAGGAGAATGGTGCTGAGAAGCCAATGCAATATAGCATTTCGAGCTG 923
||||||||||||||||||||||||||| || ||| || ||||||||||||||||||||
Sbjct 657 GCACAAGTATTGGAAGGAGAATGGTGCCGAAAAGTCACCACAATATAGCATTTCGAGCTG 716
Query 924 GATTATGAATCTTCCTGTTGATGAAAAAGTTAAGGAATGGCTAGCAGGAGAAGAATTTTA 983
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 717 GATTATGAATCTTCCTGTTGATGAAAAAGTTAAGGAATGGCTAGCTGGAGAAGAATTTTA 776
Query 984 TAAGCAGCAACTCCAAATGAAACACATTCTTCCAGCTGTGGCTGATAAGTTTCTCGTTGA 1043
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 777 TAAGCAGCAACTCCAAATGAAACACATTCTTCCAGCTGTGGCTGACAAGTTTCTCGTTGA 836
Query 1044 TCAGCAATCGAGTAAAAAAGGAGCTAGCATCCTCTGCTTTGATGAGATTCAGACAGTTGA 1103
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 837 TCAGCAATCGAGTAAAAAAGGAGCCAGCATCCTCTGCTTTGATGAGATTCAGACAGTTGA 896
Query 1104 TGTATTTGCTATTGTGGCCTTATCTGGAATTATGAGCAGATTGTTGACTACTGGAACTGT 1163
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 897 TGTATTTGCTATTGTGGCCTTATCTGGAATTATGAGCAGATTGCTGACTACTGGAACTGT 956
Query 1164 TCTTGTGGCCACCAGTAACCGAGCACCACGGGAGTTGAATCAGGACGGAATGCAGAAGGA 1223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 TCTTGTGGCCACCAGTAACCGAGCACCACGGGAGTTGAATCAGGACGGAATGCAGAAGGA 1016
Query 1224 GATATTTGATAAGTTTATCTCTAAATTGGAGAAACATTGTGAAATAATCTCAATTGGAAG 1283
||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1017 GATATTTGACAAGTTTATTTCTAAATTGGAGAAACATTGTGAGATAATCTCAATTGGAAG 1076
Query 1284 TGAAGTAGATTACCGCCGAGTTGCAGCAAAAAATTCGGCTGAAAATGTTCACTACTTATG 1343
||||||||||||||||||||||||||| |||| || | |||||||||||||||||||||
Sbjct 1077 TGAAGTAGATTACCGCCGAGTTGCAGCCCAAAACTCAGTTGAAAATGTTCACTACTTATG 1136
Query 1344 GCCTTTGAATGATGCTGTTCTGGAAGAATTTGAGAAAATGTGGCGTCAGGTCACTGACCA 1403
|||||| ||| |||||||||||||||| || |||||||||||||||||| ||||||||||
Sbjct 1137 GCCTTTAAATAATGCTGTTCTGGAAGAGTTCGAGAAAATGTGGCGTCAGATCACTGACCA 1196
Query 1404 GTACGGTGGAGAAATAACTTCGGCGACTCTCCCAGTGATGTTTGGAAGAACAGTGGAAGT 1463
|||||||||||||| ||| || ||||||||||||||||||||||||||||||||||| ||
Sbjct 1197 GTACGGTGGAGAAACAACCTCTGCGACTCTCCCAGTGATGTTTGGAAGAACAGTGGAGGT 1256
Query 1464 TCCTGAAAGCTGTAGTGGAGTGGCAAGGTTCACATTCGAGTATCTATGTGGTCGACCGGT 1523
|||| ||||||||| ||||||||||| ||||||||||||||||| ||||||||||| ||
Sbjct 1257 TCCTCAAAGCTGTAACGGAGTGGCAAGATTCACATTCGAGTATCTTTGTGGTCGACCCGT 1316
Query 1524 AGGTGCAGCAGATTATATCGCAGTGGCCAAAAACTATCATACAATTTTTATATCTGATAT 1583
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1317 AGGTGCGGCAGATTATATCGCAGTGGCCAAAAACTATCATACAATCTTTATATCTGATAT 1376
Query 1584 TCCAGCAATGAGCATGGAGATACGCGACAAGGCACGTAGGTTTATAACCCTTGTAGATGA 1643
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1377 TCCAGCAATGAGCATGGAAATACGTGACAAGGCACGTAGGTTTATAACCCTTGTAGATGA 1436
Query 1644 GTTATACAACCATCATTGTTGTCTTGTCTCAAGCGCGGAGACAGCAATTGATGAGTTGTT 1703
| |||||||||| |||||||||||||||||| ||||||||||| | || |||||||||||
Sbjct 1437 GCTATACAACCACCATTGTTGTCTTGTCTCATGCGCGGAGACACCTATCGATGAGTTGTT 1496
Query 1704 TCAAGGAACTGCAGAGGGAACGCTCTTTGACCTGGAAAGCTTCCAGTTTGAGACAGAGAC 1763
||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1497 TCAAGGAACTGCAGAAGGAACGCTCTTTGACCTTGAAAGCTTCCAGTTTGAGACGGAGAC 1556
Query 1764 GGAAGATTCAAGATTAAGGCGAGATGTGCTTGCAGAAGGTAGCATAAGTGCAGCTGGCTC 1823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1557 GGAAGATTCAAGATTAAGGCGAGATGTGCTTGCAGAAGGTAGCATAAGTGCAGCTGGATC 1616
Query 1824 GCCTTCTTCGATCGTATCAATGCTTTCTGGTGAAGAGGAAATGTTTGCTTTTGCTCGAGC 1883
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1617 GCCTTCTTCGATCGTATCAATGCTTTCTGGCGAAGAAGAAATGTTTGCTTTTGCTCGAGC 1676
Query 1884 TGCGTCTCGGTTAATTGAGATGCAGACTCCGTTGTACCTTGAAGGAGTTCGTTTCTTGCA 1943
|| || ||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1677 CGCCTCGCGGTTGATTGAAATGCAGACTCCGTTGTACCTTGAAGGAGTTCGTTTCTTGCA 1736
Query 1944 TCCTTACTTCCATCAGCAGAAGTAATGCAC-AA-A-TAACAAATGAACAGTTGACTTATT 2000
|||||| ||||||||||| ||||||| || || | ||||| ||||| | |||||||||
Sbjct 1737 TCCTTATTTCCATCAGCAAAAGTAATTCAATAATAATAACAGATGAATAATTGACTTATA 1796
Query 2001 TTGAGCCATTATTTTTT-CTACTGTGATTATTGTTCGAGCAGAAGTGACCAACCAAAAGC 2059
||| ||||||||||||| | |||||||||||||| ||||||||||||||||||| |
Sbjct 1797 TTGCGCCATTATTTTTTTCCCCTGTGATTATTGTTT-AGCAGAAGTGACCAACCAAG-G- 1853
Query 2060 TTTGGTCTTTTGCCTTTATACTAAGGCCATTCATGAATAAAAATGTTATTTT 2111
||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1854 TTTGGTCTTTTGCCTTTATACTAAGGCGATTCATGAATAAAAATGTTATTTT 1905
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80065694990
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5