BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25540.1
Length=3446
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481405 jgi|Araly1|481405|fgenesh2_kg.4__465__AT2G25540.1 4950 0.0
Ahg491486 jgi|Araly1|491486|fgenesh2_kg.7__919__AT4G32410.1 2747 0.0
Ahg932119 jgi|Araly1|932119|scaffold_400107.1 202 2e-50
> Ahg481405 jgi|Araly1|481405|fgenesh2_kg.4__465__AT2G25540.1
Length=3275
Score = 4950 bits (2680), Expect = 0.0
Identities = 3092/3287 (94%), Gaps = 43/3287 (1%)
Strand=Plus/Plus
Query 1 ATGGTTG-CGGGATCTTACCGGAGATATGAGTTTGTTCGGAACAGAGACGATTCCGATGA 59
||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 21 ATGGTTGCCGGGATCTTACCGGAGAAATGAGTTTGTTCGGAACAGAGACGATTCTGATGA 80
Query 60 TGGGCTAAAACCCTTGAAAGATCTGAATGGTCAGATATGTCAGATCTGTGGTGACGATGT 119
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 81 CGGGCTAAAACTCTTGAAAGATCTGAATGGTCAGATATGTCAGATCTGTGGTGACGATAT 140
Query 120 TGGACTCACAAAAACTGGCAATGTCTTTGTCGCTTGTAATGAATGTGGTTTTCCTTTGTG 179
||||||||| |||||||||||||||||| |||||||||||||||||| || ||||||||
Sbjct 141 TGGACTCACTGAAACTGGCAATGTCTTTG-CGCTTGTAATGAATGTGGCTTCCCTTTGTG 199
Query 180 TCAGTCTTGTTATGAGTATGAGAGGAAAGATGGATCTCAGTGTTGCCCGCAATGCAAGGC 239
|| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
Sbjct 200 TCCGTCTTGTTATGAGTATGAGAGGAAAGATGGATCTCAGTGTTGCTCGCAGTGCAAGAC 259
Query 240 TAGATTCAGACGGCACAATGG---G-A-G--TCCTCGAGTTGAAGTAGATGAAAAAGAGG 292
||||||||||||||||||||| | | | |||| ||||||||| |||||||||||||
Sbjct 260 TAGATTCAGACGGCACAATGGTCAGTAGGACTCCTGGAGTTGAAGGAGATGAAAAAGAGA 319
Query 293 ATGATGTCAATGATATCGAGAATGAGTTTGATTATACCCAGGGAAACAACAAGGCAAGAC 352
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 320 ATGATGTCAATGATATCGAGAATGAGCTTGATTATACCCAGGTAAACAACAAGGCAAGAC 379
Query 353 TCCCACATCGCGCTGAAGAGTTCTCTTCGTCATCTCGACATGAAGAATCTTTACCTGTTT 412
||||||||||||||||||||||||||||||||||||||| | |||||| ||| |||
Sbjct 380 TCCCACATCGCGCTGAAGAGTTCTCTTCGTCATCTCGAC-T--AGAATCCCAACCAATTT 436
Query 413 CTCTTCTTACTCATGGCCATCCGGTTTCTGGAGAGATTCCTACGCCGGATAGGAATGCTA 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 437 CTCTTCTTACTCATGGCCATCCGGTTTCTGGAGAGATTCCTACGCCGGATAGGAAAGCTA 496
Query 473 CTCTGTCTCCTTGTATTGACCCACAACTACCTGGTATCTATCAACTTTTGCTTCTGCCTG 532
|| |||||||||||||||| || | || | | ||| | | || ||||||
Sbjct 497 CTTTGTCTCCTTGTATTGA-CC-C-AC-A----G---CTA-C--C---TG----TGCCTG 535
Query 533 TAAGAATCTTGGACCCATCAAAAGACTTGAACTCTTATGGGCTTGTGAATGTTGACTGGa 592
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 536 TAAGAATCGTGGACCCATCAAAAGACTTGAACTCTTATGGGCTTGGGAATGTTGACTGGA 595
Query 593 aaaaaaGGATCCAAGGTTGGAAGCTGAAGCAGGATAAGAATATGATACATATGACTGGTA 652
|| ||||||| |||||||||||||||||||||| || ||||||||||| ||||||||||
Sbjct 596 AAGAAAGGATTGAAGGTTGGAAGCTGAAGCAGGAGAAAAATATGATACAAATGACTGGTA 655
Query 653 AATACCATGAAGGAAAGGGAGGAGAATTTGAAGGGACAGGGTCAAATGGTGACGAACTCC 712
||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 656 AATACCATGAAGGGAAGGGAGGAGAATTTGAAGGGACCGGGTCAAATGGTGATGAACTCC 715
Query 713 AAATGGTTGATGATGCTCG-GCTTCCTATGAGCCGTGTGGTACATTTCCCATCCGCTCGC 771
||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||
Sbjct 716 AAATGGTTGATGATGCTCGAG-TTCCTATGAGCCGTGTGGTACATTTCCCATCCTCTCGC 774
Query 772 ATGACACCTTATCGTATAGTGATAGTTCTCCGGCTCATCATTTTGGGAGTCTTCTTGCAT 831
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 775 ATGACACCTTATCGTATAGTGATAGTTCTTCGGCTCATCATTTTGGGAGTCTTCTTGCAT 834
Query 832 TATCGTACAACTCATCCCGTGAAAGATGCATATGCCCTGTGGTTGACCTCAGTTATTTGT 891
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 835 TATCGTACAACTCATCCCGTGAAAGATGCATATGCCATGTGGTTGACCTCCGTTATTTGT 894
Query 892 GAGATCTGGTTTGCCTTTTCTTGGCTTCTTGATCAGTTCCCAAAATGGTATCCCATTAAC 951
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 895 GAGATCTGGTTTGCCTTTTCGTGGCTTCTTGATCAGTTTCCAAAATGGTATCCCATTAAC 954
Query 952 AGGGAGACTTTTCTTGACAGGCTTGCTTTAAGATACGATCGAGATGGTGAACCATCACAG 1011
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 955 AGGGAGACTTTTCTTGACAGGCTTGCTTTAAGATATGATCGAGATGGTGAACCATCTCAG 1014
Query 1012 CTAGCTCCCGTGGATGTGTTTGTTAGTACGGTGGACCCGATGAAAGAGCCTCCTCTTGTA 1071
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1015 CTAGCTCCCGTAGATGTGTTTGTTAGTACGGTGGACCCAATGAAAGAGCCTCCTCTTGTA 1074
Query 1072 ACAGCAAACACAGTTCTCTCAATCCTTGCTGTGGACTACCCAGTGGATAA-AGTTGCGTG 1130
||||||||||| |||||||| |||||||| |||||||||||||| || || |||||||||
Sbjct 1075 ACAGCAAACACGGTTCTCTCGATCCTTGCAGTGGACTACCCAGTAGA-AACAGTTGCGTG 1133
Query 1131 TTACGTTTCGGATGACGGTTCAGCTATGCTAACTTTTGAAGCCCTTTCTGAAACGGCTGA 1190
||| ||||| ||||| |||||| |||||||||||||||||||||||| ||||||||| ||
Sbjct 1134 TTATGTTTCAGATGATGGTTCAACTATGCTAACTTTTGAAGCCCTTTTTGAAACGGCAGA 1193
Query 1191 GTTCTCAAAGAAATGGGTACCTTTTTGCAAGAAATTCAACATTGAACCTAGAGCTCCTGA 1250
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 GTTCGCAAAGAAATGGGTACCTTTTTGCAAGAAATTCAACATTGAACCTAGAGCTCCTGA 1253
Query 1251 GTTCTATTTTTCCCAGAAGATAGATTACTTGAAGGACAAGATCCAACCTTCTTTTGTCAA 1310
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1254 GTTCTATTTTTCCCAGAAGATAGATTACTTGAAGGATAAGATCCAACCTTCTTTTGTCAA 1313
Query 1311 AGAGAGACGGGCAATGAAGAGAGAGTATGAGGAGTTTAAAGTGAGGATCAATATCCTCGT 1370
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1314 AGAGAGGCGGGCAATGAAGAGAGAGTATGAGGAGTTTAAAGTGAGGATCAATATCCTTGT 1373
Query 1371 CGCTAAAGCACAGAAGATTCCTGAAGATGGTTGGACAATGGAGGATGGTACGTCCTGGCC 1430
||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||
Sbjct 1374 TGCTAAAGCACAGAAGATTCCTGAAGATGGCTGGACAATGGATGATGGTACACCCTGGCC 1433
Query 1431 TGGTAACAACCCTAGAGACCATCCTGGGATGATTCAGGTTTTCTTAGGCCATAGTGGAGG 1490
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1434 CGGAAACAACCCTAGAGACCATCCTGGGATGATTCAGGTTTTCTTAGGCCATAGTGGAGG 1493
Query 1491 TCTGGATACCGATGGAAATGAGCTACCTAGGCTCATCTATGTGTCCCGTGAAAAGCGTCC 1550
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1494 TCTGGATACCGATGGAAATGAGCTACCTAGGCTCATCTATGTGTCCCGAGAAAAGCGTCC 1553
Query 1551 TGGATTTCAGCACCACAAGAAGGCTGGAGCTATGAATGCCTTGATTCGTGTTTCTGCTGT 1610
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1554 TGGATTTCAGCACCACAAGAAGGCTGGAGCTATGAATGCCCTGATCCGTGTTTCTGCTGT 1613
Query 1611 TCTTACTAATGGGGCGTATCTTTTGAACGTTGATTGTGATCATTACTTCAACAACAGCAA 1670
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1614 TCTTACTAATGGGGCATATCTTTTAAACGTTGATTGTGATCATTACTTCAACAACAGCAA 1673
Query 1671 GGCGATTAAGGAAGCCATGTGTTTCATGATGGACCCTGCAATCGGAAAGAAGTGTTGCTA 1730
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1674 GGCGATTAAGGAAGCCATGTGTTTCATGATGGACCCTGCAATCGGAAAGAAGTGCTGCTA 1733
Query 1731 CGTGCAGTTTCCACAACGTTTCGATGGTATTGACTTGCATGATCGATACGCCAACAGGAA 1790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1734 CGTGCAGTTTCCACAACGTTTCGATGGTATTGACTTGCATGATCGATACGCCAACAGGAA 1793
Query 1791 TACTGTCTTCTTTGATATCAACTTGAAGGGGTTAGATGGTATACAAGGTCCTGTGTATGT 1850
|| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1794 TATTGTCTTCTTTGATATTAACTTGAAGGGGTTAGATGGTATCCAAGGTCCTGTGTATGT 1853
Query 1851 GGGCACTGGCTGCTGTTTCAACAGGCAGGCCTTGTATGGGTATGATCCTGTTCTAACAGA 1910
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1854 GGGCACTGGTTGCTGTTTCAACAGGCAGGCCCTGTATGGGTATGATCCTGTTCTAACAGA 1913
Query 1911 GGAAGATCTTGAGCCTAATATAATTGTAAAGAGCTGTTTTGGCTCGAGGAAGAAAGGAAA 1970
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1914 GGAAGATCTTGAGCCTAATATAATTATAAAGAGCTGTTTTGGCTCGAGGAAGAAAGGAAA 1973
Query 1971 GAGTAGAAAAATACCTAACTATGAAGATAACAGAAGCATTAAGAGAAGTGACTCCAACGT 2030
||| || ||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 1974 GAGAAGCAAAATACCTAACTATGACCATAACAGAAGCATCAAGAGAAGTGACTCCAACGT 2033
Query 2031 TCCACTTTTCAATATGGAAGACATTGACGAGGACGTTGAAGGCTATGAGGATGAGATGTC 2090
||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 2034 TCCACTTTTCAGTATGGAAGACATTGACGAGGGTGTTGAAGGCTATGATGATGAGATGTC 2093
Query 2091 TCTTCTAGTATCCCAGAAAAGGCTAGAAAAGCGTTTTGGCCAGTCGCCAGTGTTTATTGC 2150
||||||||| || ||||||||||| || ||||||||||| ||||| ||||||||||||||
Sbjct 2094 TCTTCTAGTGTCTCAGAAAAGGCTGGAGAAGCGTTTTGGTCAGTCACCAGTGTTTATTGC 2153
Query 2151 AGCTACCTTCATGGAACAAGGAGGTCTTCCATCAACAACCAACCCCTTGACTCTTCTCAA 2210
|||||||||||||||||||||||||||||| || |||| |||||| ||||||||||||
Sbjct 2154 GGCTACCTTCATGGAACAAGGAGGTCTTCCACCATCAACGAACCCCACGACTCTTCTCAA 2213
Query 2211 GGAGGCGATTCATGTCATAAGCTGTGGTTATGAGGCCAAGACTGATTGGGGCAAAGAGAT 2270
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 2214 GGAGGCGATTCATGTCATAAGCTGTGGTTATGAGGCCAATACTGAATGGGGCAAAGAGAT 2273
Query 2271 CGGGTGGATCTACGGTTCTGTGACAGAAGATATTCTTACTGGATTCAAGATGCATGCAAG 2330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2274 CGGGTGGATCTACGGTTCTGTGACAGAAGATATTCTTACTGGATTCAAGATGCATGCGAG 2333
Query 2331 GGGTTGGATATCAATCTACTGTGTTCCTTCACGCCCTGCGTTCAAGGGATCCGCACCCAT 2390
||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||
Sbjct 2334 GGGTTGGATATCAATCTACTGCGTGCCTCCACGCCCTGCGTTCAAGGGATCCGCACCCAT 2393
Query 2391 CAATCTCTCTGATCGTTTGAACCAAGTTCTTCGATGGGCTTTGGGGTCTATCGAGATTCT 2450
|||||||||||| || ||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 2394 CAATCTCTCTGACCGCTTGAACCAAGTTCTTCGGTGGGCTTTGGGATCTATCGAGATTCT 2453
Query 2451 TCTGAGTAGACATTGCCCTATATGGTATGGCTATAATGGGAGGTTGAAACTTTTGGAGAG 2510
|||||| ||||||||||||||||||| |||||||||||| ||||||||||| ||||||||
Sbjct 2454 TCTGAGCAGACATTGCCCTATATGGTCTGGCTATAATGGAAGGTTGAAACTGTTGGAGAG 2513
Query 2511 AATTGCCTACATCAATACCATAGTCTATCCAATTACATCCATCCCGCTCCTCGCCTATTG 2570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2514 AATTGCCTACATCAATACCATAGTCTATCCAATTACATCCATCCCGCTCCTCGCCTATTG 2573
Query 2571 TATGCTTCCAGCTTTTTGCCTCATAACCAACACGTTCATCATACCAGAGATAAGTAACT- 2629
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||
Sbjct 2574 TATGCTTCCAGCTTTTTGCCTCATCACCAACAAGTTCATCATACCAGAGATAAGCAACTC 2633
Query 2630 TAGCGAGCTTGTGTTTCATGCTGCTATTTGCATCCATCTACGCATCAGCAATCTTGGAGC 2689
| ||| |||||||||||| ||||||||| |||||||||||||||| |||||||||||||
Sbjct 2634 T-GCGTCCTTGTGTTTCATACTGCTATTTACATCCATCTACGCATCGGCAATCTTGGAGC 2692
Query 2690 TCAAATGGAGTGATGTGGCCCTTGAAGACTGGTGGAGGAACGAGCAGTTTTGGGTAATCG 2749
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2693 TCAGATGGAGTGATGTGGCCCTTGAAGAATGGTGGAGGAACGAGCAGTTTTGGGTAATCG 2752
Query 2750 GTGGAACATCGGCTCATCTTTTTGCAGTGTTTCAAGGTCTACTCAAAGTTTTTGCAGGGA 2809
||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2753 GTGGAACCCCGGCTCATCTTTTTGTAGTGTTTCAAGGTCTACTCAAAGTTTTTGCAGGGA 2812
Query 2810 TAGACACAAACTTCACAGTCACATCAAAAGCCTCAGATGAAGATGGAGACTTTGCAGAGC 2869
|||||||||||||||| |||||||| |||||||| || ||||||||||||||||||||||
Sbjct 2813 TAGACACAAACTTCACGGTCACATCGAAAGCCTCTGACGAAGATGGAGACTTTGCAGAGC 2872
Query 2870 TTTACGTCTTCAAATGGACGTCTCTTCTCATCCCACCAACCACTATCTTACTGGTCAACC 2929
||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 2873 TTTACGTCTTCAAATGGACGTCTCTTCTCATCCCACCAACCACTAACTTATTGGTCAACT 2932
Query 2930 TTGTCGGTATTGTGGCCGGTGTCTCCTATGCAATAAACAGTGGCTACCAATCGTGGGGAC 2989
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 2933 TTGTCGGTATTGTGGTTGGGGTCTCCTATGCAATAAACAGTGGCTACCAATCGTGGGGAC 2992
Query 2990 CTCTCATGGGAAAGCTCCTTTTTGCTTTTTGGGTTGTTGCTCATCTTTACCCTTTCTTGA 3049
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 2993 CTCTCATGGGAAAGCTCTTTTTTGCTCTTTGGGTTGTTGCTCATCTTTACCCTTTCTTGA 3052
Query 3050 AGGGTCTTTTGGGCAGACAGAACCGGACTCCGACCATTGTCATTGTCTGGTCTGCACTTC 3109
|| | |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 3053 AGAGACTTTTGGGAAGACAGAACCGGACTCCGACCATTGTCATTGTCTGGTCTGCGCTTC 3112
Query 3110 TTGCATCCATCTTCTCATTACTTTGGGTCCGAATCAACCCCTTTGTTTCCACCACTGGGG 3169
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 3113 TTGCATCCATCTTCTCATTACTTTGGGTCCGAATCAACCCCTTTGTTTCCACCACTGGAG 3172
Query 3170 TTATGAGCAACAGTTTCATGGGTGAGTGAGCTGCCAACTATTATGCTTCAGCCCTGTTTA 3229
|||||||||||||||||||||| ||||||||||| ||| ||||| ||||||||| | |
Sbjct 3173 TTATGAGCAACAGTTTCATGGGACAGTGAGCTGCCCACTGTTATG-TTCAGCCCTAT--A 3229
Query 3230 TAAATGAGTGTGTGGATATATACGTAGTAAACCCCATTAATCTAAGA 3276
|||||| ||||||||||||||| ||| |||||||||||||||||||
Sbjct 3230 TAAATGTGTGTGTGGATATATAA-TAGGAAACCCCATTAATCTAAGA 3275
> Ahg491486 jgi|Araly1|491486|fgenesh2_kg.7__919__AT4G32410.1
Length=3806
Score = 2747 bits (1487), Expect = 0.0
Identities = 2279/2659 (86%), Gaps = 64/2659 (2%)
Strand=Plus/Plus
Query 529 CCTGTAAGAATC-TTGGACCCATCAAAAGACTTGAACTCTTATGGGCTTGTG-AATGTTG 586
|||||||||||| || ||||| |||||||||||||||||||||||||||| | |||||||
Sbjct 771 CCTGTAAGAATCGTT-GACCCGTCAAAAGACTTGAACTCTTATGGGCTTG-GAAATGTTG 828
Query 587 ACTGGaaaaaaaGGA-TCCAAGGTTGGAAGCTGAAGCAGGATAAGAATATGATACATATG 645
|||||||| ||| || | |||| ||||||||||||||||| ||||||||| |||| |||
Sbjct 829 ACTGGAAAGAAA-GAGTTGAAGGCTGGAAGCTGAAGCAGGAGAAGAATATGTTACAGATG 887
Query 646 ACTGGTAAATACCATGAA-GGAAAGGGAGGAGAATTTGAAGGGACAGGGTCAAATGGTGA 704
|||||||||||||||||| ||||| ||||||||| |||||||||| || || ||||| ||
Sbjct 888 ACTGGTAAATACCATGAAGGGAAA-GGAGGAGAAATTGAAGGGACTGGTTCCAATGGCGA 946
Query 705 CGAACTCCAAATGGTTGATGATGCTCGGCTTCCTATGAGCCGTGTGGTACATTTCCCATC 764
||||||||||||| ||||||| | || ||||||||||| || ||||| | | |||||||
Sbjct 947 AGAACTCCAAATGGCTGATGATACGCGTCTTCCTATGAGTCGCGTGGTGCCTATCCCATC 1006
Query 765 CGCTCGCATGACACCTTATCGTATAGTGA-TAGTTCTCCGGCTCATCATTTTGGGAGTCT 823
||||| | || |||||||| | |||| || |||||||||| ||||| ||| | |||
Sbjct 1007 TTCTCGCCTAACTCCTTATCGGGTTGTGATTA-TTCTCCGGCTTATCATCTTGTGTTTCT 1065
Query 824 TCTTGCATTATCGTACAACTCATCCC-GTGAAAGATGCATATGCC-CTGTGGTTGACCTC 881
||||||| |||||||||||||| ||| |||||| |||||||| || |||||||||||||
Sbjct 1066 TCTTGCAATATCGTACAACTCA-CCCTGTGAAAAATGCATAT-CCTTTGTGGTTGACCTC 1123
Query 882 AGTTATTTGTGAGATCTGGTTTGCCTTTTCTTGGCTTCTTGATCAG-TTCCCAAAATGGT 940
||||| ||||||||||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 1124 GGTTATCTGTGAGATCTGGTTTGCATTTTCTTGGCTTCTTGATCAGTTTCCC-AAATGGT 1182
Query 941 ATCCCATTAACAGGGAGACTTTTCTTGACAGGCTTGCTTTAAGATACGATCGAGATGGTG 1000
| ||||||||||||||||||| ||||||| | || ||| ||||||| |||||||||||||
Sbjct 1183 ACCCCATTAACAGGGAGACTTATCTTGACCGTCTCGCTATAAGATATGATCGAGATGGTG 1242
Query 1001 AACCATCACAGCTAGCTCCCGTGGATGTGTTTGTTAGTACGGTGGACCCGA-TGAAAGAG 1059
||||||||||||| | ||| || ||||||||||||||||| ||||| || | ||||||||
Sbjct 1243 AACCATCACAGCTCGTTCCTGTTGATGTGTTTGTTAGTACAGTGGATCC-ATTGAAAGAG 1301
Query 1060 CCTCCTCTTGTAACAGCAAACACAGTTCTCTCAATCCTTGCTGTGGACTACCCAGTGGAT 1119
||||| ||||| |||||||||||||||||||| || |||||||||||||||||||| |||
Sbjct 1302 CCTCCCCTTGTTACAGCAAACACAGTTCTCTCGATTCTTGCTGTGGACTACCCAGTAGAT 1361
Query 1120 AAAGTTGCGTGTTACGTTTCGGATGACGGTTCAGCTATGCTAACTTTTGAAGCCCTTTCT 1179
||||| || ||||| ||||| ||||| |||||||||||||| || |||||| ||||||||
Sbjct 1362 AAAGTAGCCTGTTATGTTTCAGATGATGGTTCAGCTATGCTTACCTTTGAATCCCTTTCT 1421
Query 1180 GAAACGGCTGAGTTCTCAAAGAAATGGGTACCTTTTTGCAAGAAATTCAACATTGAACCT 1239
||||| ||||||||| |||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1422 GAAACCGCTGAGTTCGCAAAGAAATGGGTACCGTTTTGCAAAAAATTCAACATTGAACCT 1481
Query 1240 AGAGCTCCTGAGTTCTATTTTTCCCAGAAGATAGATTACTTGAAGGACAAGATCCAACCT 1299
|| || ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1482 AGGGCCCCTGAATTCTATTTTGCCCAGAAGATAGATTACTTGAAGGACAAGATCCAACCT 1541
Query 1300 TCTTTTGTCAAAGAGAGACGGGCAATGAAGAGAGAGTATGAGGAGTTTAAAGTGAGGATC 1359
|||||||| |||||| |||| || ||||||||||||||||| |||||||||||||||||
Sbjct 1542 TCTTTTGTTAAAGAGCGACGAGCTATGAAGAGAGAGTATGAAGAGTTTAAAGTGAGGATA 1601
Query 1360 AATATC-CTCGTCGCTAAAGCACAGAAGATTCCTGAAGATGGTTGGACAATGGAGGATGG 1418
||| | || || || ||||||||||| || |||||||| || ||||||||| |||||||
Sbjct 1602 AATG-CGCTTGTTGCCAAAGCACAGAAAATCCCTGAAGAAGGCTGGACAATGCAGGATGG 1660
Query 1419 TACGTCC-TGGCCTGGTAACAACCCTAGAGACCATCCTGGGATGATTCAGGTTTTCTTAG 1477
||| ||| ||||||||||||||| ||||||| |||||||| ||||| ||||| |||||||
Sbjct 1661 TAC-TCCCTGGCCTGGTAACAACACTAGAGATCATCCTGGAATGATACAGGTGTTCTTAG 1719
Query 1478 GCCATAGTGGAGGTCTGGATACCGATGGAAATGAGCTACCTAGGCTCATCTATGTGTCCC 1537
||||||| || |||||||||||||||||||||||| | ||||| ||||||||||| || |
Sbjct 1720 GCCATAGCGGGGGTCTGGATACCGATGGAAATGAGTTGCCTAGACTCATCTATGTTTCTC 1779
Query 1538 GTGAAAAGCGTCCTGGATTTCAGCACCACAAGAAGGCTGGAGCTATGAATGCCTTGATTC 1597
|||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| |
Sbjct 1780 GTGAAAAGCGTCCTGGATTTCAACACCACAAAAAGGCTGGAGCTATGAATGCATTGATCC 1839
Query 1598 GTGTTTCTGCTGTTCTTACTAATGGGGCGTATCTTTTGAACGTTGATTGTGATCATTACT 1657
||||||||||||||||||| ||||| || |||||||||||||| ||||||||||||||||
Sbjct 1840 GTGTTTCTGCTGTTCTTACCAATGGAGCATATCTTTTGAACGTGGATTGTGATCATTACT 1899
Query 1658 TCAACAACAGCAAGGCGATTAAGGAAGCCATGTGTTTCATGATGGACCCTGCAATCGGAA 1717
| || ||||| ||||| ||||| ||||| ||||||||||||||||||||||| || ||||
Sbjct 1900 TTAATAACAGTAAGGCTATTAAAGAAGCTATGTGTTTCATGATGGACCCTGCTATTGGAA 1959
Query 1718 AGAAGTGTTGCTACGTGCAGTTTCCACAACGTTTCGATGGTATTGACTTGCATGATCGAT 1777
||||||| ||||| || ||||| ||||||||||| || |||||||| ||||| |||||||
Sbjct 1960 AGAAGTGCTGCTATGTCCAGTTCCCACAACGTTTTGACGGTATTGATTTGCACGATCGAT 2019
Query 1778 ACGCCAACAGGAATACT-GTCTTCTTTGATATCAACTTGAAGGGGTTAGATGGTATACAA 1836
| ||||||||||||| | ||||| |||||||| ||| ||||||| || |||||||| ||
Sbjct 2020 ATGCCAACAGGAATA-TAGTCTTTTTTGATATTAACATGAAGGGCTTGGATGGTATCCAG 2078
Query 1837 GGTCCTGTGTATGTGGGCACTGGCTGCTGTTTCAACAGGCAGGC-CTTGTATGGGTATGA 1895
||||| || |||||||| ||||| || ||||| || |||||||| || |||||||||||
Sbjct 2079 GGTCCAGTATATGTGGGTACTGGTTGTTGTTTTAATAGGCAGGCTCTA-TATGGGTATGA 2137
Query 1896 TCCTGTTCTAACAGAGGAAGATCTTGAGCCTAATATAATTGTAAAGAGCTGTTTTGGCTC 1955
||||||| | || |||||||||||||| || ||||| ||||| |||||||||| || ||
Sbjct 2138 TCCTGTTTTGACGGAGGAAGATCTTGAACCAAATATTATTGTGAAGAGCTGTTGCGGGTC 2197
Query 1956 GAGGAAGAAAGGAAAGAGTAGAAA-AA-TACCTAACTATGAAGATA-ACAGAAGCATTAA 2012
|| ||||||||||||||||| || || || |||||||||| | | | ||| |||| ||
Sbjct 2198 AAGAAAGAAAGGAAAGAGTAGCAAGAAGTA--TAACTATGAAAAGAGA-AGAGGCATCAA 2254
Query 2013 GAGAAGTGACTCCAACGTTCCACTTTTCAATATGGAAGACATTGACGAGGACGTTGAAGG 2072
|||||||||||||| | |||||||||||||||||| ||||| || |||| |||||||
Sbjct 2255 CAGAAGTGACTCCAATGCTCCACTTTTCAATATGGAGGACATCGATGAGGGTTTTGAAGG 2314
Query 2073 CTATGAGGATGAGATGTCTCTTCTAGTATCCCAGAAAAG-GCTAGAAAAGCGTTTTGGCC 2131
||||| ||||||| |||| ||||| | |||||||| || | |||| ||||||||||| |
Sbjct 2315 TTATGATGATGAGAGGTCTATTCTAATGTCCCAGAAGAGTG-TAGAGAAGCGTTTTGGTC 2373
Query 2132 AGTCGCCAGTGTTTATTGCAGCTACCTTCATGGAACAAGGAGGTC-TTCCATCAACAACC 2190
|||| || || |||||||| || ||||||||||||||||| || | ||||| ||||||||
Sbjct 2374 AGTCACCTGTATTTATTGCGGCAACCTTCATGGAACAAGGCGG-CATTCCACCAACAACC 2432
Query 2191 AA-CCC-CTTGACTCTTCTCAAGGAGGCGATTCATGTCATAAGCTGTGGTTATGAGGCCA 2248
|| ||| || |||||||| |||||||| |||||||| |||||||||||||| |||| ||
Sbjct 2433 AATCCCGCT--ACTCTTCTGAAGGAGGCTATTCATGTTATAAGCTGTGGTTACGAGGACA 2490
Query 2249 AGACTGATTGGGGCAAAGAGATCGGGTGGATCTACGGTTCTGTGACAGAAGATATTCTTA 2308
||||||| |||||||||||||| || |||||||| ||||| ||||| |||||||||||||
Sbjct 2491 AGACTGAATGGGGCAAAGAGATTGGTTGGATCTATGGTTCAGTGACGGAAGATATTCTTA 2550
Query 2309 CTGGATTCAAGATGCATGCAAGGGGTTGGATATCAATCTACTGTGTTCCTTCACGCCCTG 2368
|||| |||||||||||||| ||||||||||||| |||||||| |||| |||||||||
Sbjct 2551 CTGGGTTCAAGATGCATGCCCGGGGTTGGATATCGATCTACTGCAATCCTCCACGCCCTG 2610
Query 2369 CGTTCAAGGGATCCGCACCCATCAATCTCTCTGATCGTTTGAACCAAGTTCTTCGATGGG 2428
||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 2611 CGTTCAAGGGATCTGCACCAATCAATCTTTCTGATCGTTTGAACCAAGTTCTTCGATGGG 2670
Query 2429 CTTTGGGGTCTATCGAGATTCTTCTGAGTAGACATTGCCCTATATGGTATGGCTATAATG 2488
| ||||| ||||||||||||||||| || |||||||| ||||| |||||||| || |||
Sbjct 2671 CATTGGGATCTATCGAGATTCTTCTTAGCAGACATTGTCCTATCTGGTATGGGTACCATG 2730
Query 2489 GGAGGTTGAAACTTTTGGAGAGAATTGCCTACATCAATACCATAGTCTATCCAATTACAT 2548
| ||||||| |||||||||||| ||||| || ||||| ||||| ||||| || |||||||
Sbjct 2731 GAAGGTTGAGACTTTTGGAGAGGATTGCTTATATCAACACCATCGTCTACCCTATTACAT 2790
Query 2549 CCATCCCGCTCCTCGCCTATTGTATGCTTCCAGCTTTTTGCCTCATAACCAACACG-TTC 2607
||||||| || | || |||||||| ||||| |||||||||||||| ||| ||| | |||
Sbjct 2791 CCATCCCTCTTATTGCGTATTGTATCCTTCCCGCTTTTTGCCTCATCACCGACA-GATTC 2849
Query 2608 ATCATACCAGAGATAAGTAACTTA-GCGAGC-TTGTGTTTCATGCTGCTATTTGCATC-C 2664
|||||||| |||||||| |||| | ||||| || || ||||| || || || |||| |
Sbjct 2850 ATCATACCCGAGATAAGCAACT-ACGCGAGTATT-TGGTTCATTCTACTCTT--CATCTC 2905
Query 2665 A-T--CTACGCATCAGCAATCTTGGAGCTCAAATGGAGTGATGTG-GCCCTTGAAGACTG 2720
| | || | | | | |||| ||||||| | |||||| | |||| || |||| || ||
Sbjct 2906 AATTGCTGTG-A-CTGGAATCCTGGAGCTGAGATGGAGCGGTGTGAGCA-TTGAGGATTG 2962
Query 2721 GTGGAGGAACGAGCAGTTTTGGGTAATCGGTGGAACATCGGCTCATCTTTTTGCAGTGTT 2780
|||||||||||||||||| ||||| || ||||| ||||| || |||||||||||||| ||
Sbjct 2963 GTGGAGGAACGAGCAGTTCTGGGTCATTGGTGGCACATCCGCCCATCTTTTTGCAGTCTT 3022
Query 2781 TCAAGGTCTACTCAAAGTTTTTGCAGGGATAGACACAAACTTCACAGTCACATCAAAAGC 2840
||||||||||| || ||| |||| || || ||||| |||||||| || ||||| |||||
Sbjct 3023 CCAAGGTCTACTTAAGGTTCTTGCTGGTATCGACACCAACTTCACCGTTACATCCAAAGC 3082
Query 2841 CTCAGATGAAGATGGAGACTTT-GCAGAGCTTTACGTCTTCAAATGGAC-GTCTCTTCTC 2898
|||||| |||||||| || ||| |||||||| ||| ||||||||||||| | ||||||||
Sbjct 3083 CTCAGACGAAGATGGGGA-TTTCGCAGAGCTCTACATCTTCAAATGGACAG-CTCTTCTC 3140
Query 2899 ATCCCACCAACCACTATCTTACTGGTCAACCTTGTCGGTATTGTGGCCGGTGTCTCCTAT 2958
|| ||||||||||| || |||| || ||||| | || |||||||| |||||||| |||
Sbjct 3141 ATTCCACCAACCACCGTCCTACTTGTGAACCTCATAGGCATTGTGGCTGGTGTCTCTTAT 3200
Query 2959 GCAATAAACAGTGGCTACCAATCGTGGGGACCTCTCAT-GGGAAAGCTCCTTTTT-GCTT 3016
|| ||||||| || |||||||||||||| |||||| | ||||| |||| || || || |
Sbjct 3201 GCTGTAAACAGCGGGTACCAATCGTGGGGTCCTCTCTTTGGGAA-GCTC-TTCTTCGCCT 3258
Query 3017 TTTGGGTTGTTGCTCATCTTTACCCTTTCTTGAAGGGTCTTTTGGGCAGACAGAACCGGA 3076
| |||||| |||| ||||| |||||||||||||| ||||| ||||| ||||| ||||| |
Sbjct 3259 TATGGGTTATTGCCCATCTCTACCCTTTCTTGAAAGGTCTGTTGGGAAGACAAAACCGAA 3318
Query 3077 CTCCGACCATTGTCATTGTCTGGTCTGCACTTCTTGCATCCATCTTCTCATTACTTTGGG 3136
| || ||||| |||||||||||||||| ||||| || ||||||||||| || |||||||
Sbjct 3319 CACCAACCATCGTCATTGTCTGGTCTGTTCTTCTGGCCTCCATCTTCTCGTTGCTTTGGG 3378
Query 3137 TCCGAATCAACCCCTTTGT 3155
|| | ||||| ||||||||
Sbjct 3379 TCAGGATCAATCCCTTTGT 3397
> Ahg932119 jgi|Araly1|932119|scaffold_400107.1
Length=3310
Score = 202 bits (109), Expect = 2e-50
Identities = 521/710 (73%), Gaps = 68/710 (10%)
Strand=Plus/Plus
Query 2218 ATTCATGTCATAAGCTGTGGTTATGAGGCCAAGACTGATTGGGGCAAAGAGATCGGGTGG 2277
||||| || || |||||||| || || | || || || ||||| |||||||| ||||||
Sbjct 2304 ATTCAAGTTATTAGCTGTGGATACGAAGAGAAAACCGAATGGGGAAAAGAGATTGGGTGG 2363
Query 2278 ATCTACGGTTCTGTGACAGAAGATATTCTT-ACTGGATTCAAGATGCA-TGCAAGGGGTT 2335
|| || || || ||||| ||||||| |||| || || ||||||||||| ||| | || |
Sbjct 2364 ATATATGGATCGGTGACTGAAGATA-TCTTGACGGGTTTCAAGATGCACTGCCA-TGGAT 2421
Query 2336 GGATATCAATCTACTGTGTTCCTTCA-CGCCCTGCGTTCAAGGGATCCGCACCCATCAAT 2394
||| ||| | || ||| | || | || | || ||||| ||||| || || || ||
Sbjct 2422 GGAGATCTGTGTATTGTATGCC-AAAGCGAGCGGCTTTCAAAGGATCTGCTCCGATTAA- 2479
Query 2395 C-TCTCTGATCGT-TTGAACCAAGTTCTTCGATGGGC-TTTGGGGTCTATCGAGATTCTT 2451
| | || |||||| || | |||||||| || ||||| || || ||| | |||||| ||
Sbjct 2480 CTTGTCAGATCGTCTT-CATCAAGTTCTACGTTGGGCACTT-GGTTCTGTAGAGATT-TT 2536
Query 2452 C-TGAGTAGACATTGCCCTATATGGTATGGCTATAATGG-GAGGTTGAAACT-TTTGGAG 2508
| |||| || |||||||| || |||||||| ||| || | |||| ||| | |||||
Sbjct 2537 CTTGAGCAGGCATTGCCCGATTTGGTATGGTTATGGCGGCG-GGTT-AAAATGGTTGGAA 2594
Query 2509 AGAATTGC-C-TACATCAA-TACCATAGTCTATCCAATT--ACATCCATCCCGCTCCTCG 2563
|| ||| | | ||||| || | | | |||||||| || |||||| ||||| | || |
Sbjct 2595 AG-ATT-CTCGTACATTAACT-CTGTTGTCTATCC--TTGGACATCCCTCCCGTTGCTTG 2649
Query 2564 CCTATTGTAT-GCTTCCAGCTTTTTGCCTCA-TAACC--AACACGTTCATCATACCAGAG 2619
||| || | |||||||| |||| | | | ||| || | |||||| | || |||
Sbjct 2650 TCTACTG-CTCACTTCCAGCCATTTG-TTTACTCACCGGAA-A-ATTCATCGTCCCTGAG 2705
Query 2620 ATAAGTAACTTA-GCGAGCT-TGTGT-TTCATGCTGCTAT-TTGCA--TCCATCTAC-GC 2672
||||||||| || ||| | | | | | |||||||| || || || ||||| | | |
Sbjct 2706 ATAAGTAAC-TACGCG-GGTAT-TCTCTTCATGCT--AATGTT-CATGTCCAT-TGCGGT 2758
Query 2673 ATCAGCAAT-CTTGGAGCT-CAAATGGAGTGATGT-GGCCCTTGAAGACTGGTGGAGGAA 2729
| | | || | | || | | ||||| | | || || | || || |||||||| ||
Sbjct 2759 AACTGGTATAC-TCGAAATGC-AATGGGGCAAAGTAGG-AATCGACGATTGGTGGAGAAA 2815
Query 2730 CGAGCAGTTTTGGGTAATCGGTGGA-ACATCGGCTCATCTTTTTGCAGTGTTTCAAGGTC 2788
||||||||||||||| || || ||| | || ||||||| ||||| |||||||||||
Sbjct 2816 CGAGCAGTTTTGGGTCATTGGAGGAGTC-TCTTCTCATCTATTTGCTCTGTTTCAAGGTT 2874
Query 2789 TACTCAAAGTTTTTGCAGGGA-T-AGACACAAACTTCACAGTCACATCAAAAGCCTCAGA 2846
||||||||||| ||||| ||| | | |||||||||||||||||||||||||||| ||||
Sbjct 2875 TACTCAAAGTTCTTGCA-GGAGTCA-ACACAAACTTCACAGTCACATCAAAAGCAGCAGA 2932
Query 2847 TGAAGATGGAGACTT-TGCAGAGCTTTACGTCTTCAAATGGACGTCTCTT 2895
||| |||||| || | ||||||||||| ||||||||||||| || |||
Sbjct 2933 TGA---TGGAGAGTTCT-CAGAGCTTTACATCTTCAAATGGACATC-CTT 2977
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 130118842087
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5