BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25560.1
Length=2512
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481406 jgi|Araly1|481406|fgenesh2_kg.4__466__AT2G25560.1 3406 0.0
> Ahg481406 jgi|Araly1|481406|fgenesh2_kg.4__466__AT2G25560.1
Length=2425
Score = 3406 bits (1844), Expect = 0.0
Identities = 2262/2452 (92%), Gaps = 75/2452 (3%)
Strand=Plus/Plus
Query 1 AACTAAGCAGTCaaaaaaaaaaaa-aaaaaaaaCGAGTTGTGAAATTAGAG--AAGaaaa 57
|||||||||||||||||||||||| || |||||||||||||||||||| || ||||
Sbjct 1 AACTAAGCAGTCAAAAAAAAAAAATCAAGGGAACGAGTTGTGAAATTAGAGAAAAAAAAA 60
Query 58 -aaaaCTCAGAGCAGTGACAAACATCGATTCAAGAGTTGTGAAGCGCCGCCGATTTTCGT 116
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 CAAAACTCAGAGCAGTGACAAACATCGATTCAAGAATTGTGAAGCGCCGCCGATTTTCGT 120
Query 117 AGAAGATAATCTGATTCCAAATTTCTCTTTTTTGGGATCGCTTCGCTACTTCTGATTCCA 176
|||||||||||| |||||||| ||||| |||||||||||||| ||||||||||||||||
Sbjct 121 AGAAGATAATCTAATTCCAAAATTCTC--TTTTGGGATCGCTTTGCTACTTCTGATTCCA 178
Query 177 TTTCACCTCGGC-AAAAATCTGGAATCTGTACCGTCAC-AGCCGAAAATTCTCTTCC-TT 233
||| ||||||| |||||||||||||||||| |||||| | || ||||||||||||| ||
Sbjct 179 TTTTTCCTCGGCAAAAAATCTGGAATCTGTATCGTCACTA-CCAAAAATTCTCTTCCTTT 237
Query 234 CACCGTTTCGTTTCGCTGCTTATTGTGCGGATTTGTCGTTGGTGCTCAATTCCCCTAGAA 293
| ||||||||||||||| |||||| ||||||||||||||||||||| ||||||| |||||
Sbjct 238 C-CCGTTTCGTTTCGCTTCTTATTTTGCGGATTTGTCGTTGGTGCTTAATTCCCGTAGAA 296
Query 294 TCGGTATCCAGTCCATCTCTCGTGCAACTTTTATATCAGTCTCTTTATTGAGAAGTCGAT 353
|| ||||||| ||||||||||||| | | | || ||||||||||||||||
Sbjct 297 TCTGTATCCAATCCATCTCTCGTG---C----A-A-CA------TTATTGAGAAGTCGAT 341
Query 354 TCGGTTTCCCCGAGC---------AGTCAGGTCCCTGCTCCTCCATTCGTGGCATTTTGT 404
|| |||| ||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 342 TCAGTTTTCCCGAGCTGGTATTAGAGTCTGGTCCCTGCTCCTCCATTCGTGGCATTTTGT 401
Query 405 AGAGGAGAATATACATTAGGAGACTTCCAATGGAGTTTAATAAAGAAGAAGCTACAAGGG 464
||||||| |||| ||||||||||||| |||||| | |||||||||||| |||| |||||
Sbjct 402 AGAGGAGGGTATAAATTAGGAGACTTCAAATGGAATGTAATAAAGAAGACGCTATAAGGG 461
Query 465 CTAGAGAGATTGCAAAGAGGAAGTTTTTAGCAAATGATTTTGCGGGGGCGAGGAAATTTG 524
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 462 CTAGAGAGATTGCAAAGAGGAAGTTTTTAGCAAATGATTTTGCGGGGGCCAGGAAATTTG 521
Query 525 CCTTGAAGGCTCAGTTTCTGTATCCTGAACTCGATGGAATTGCTCAAATGGTGGCCACTT 584
|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
Sbjct 522 CCTTGAAGGCTCAGTTCCTGTATCCTGAACTCGATGGAATTGCCCAAATGGTGGCCACAT 581
Query 585 TTGATGTTCATTTATCTGCACAGAATATCATTTATGGGGATG-TAGACCACTATGGTGTA 643
||||||||||||||||||| |||||||| || |||||||| | ||||| ||||||||||
Sbjct 582 TTGATGTTCATTTATCTGCTCAGAATATAATATATGGGGA-GATAGACTTCTATGGTGTA 640
Query 644 CTTGGTCTGAACCCTGAGGCTGATGACGAAA-TAGTGAGGAAGCGTTACAGAAAGTTAGC 702
|||||||||||||||||||||||| |||||| | ||||||||||||||||||||||| ||
Sbjct 641 CTTGGTCTGAACCCTGAGGCTGATCACGAAACT-GTGAGGAAGCGTTACAGAAAGTTGGC 699
Query 703 TGTAATGCTTCATCCAGACAGGAACAAGTC-AGTCGGAGCAGAGGAAGCCTTTAAGTTTC 761
||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||
Sbjct 700 TGTAATGCTTCATCCTGACAGGAACAAGTCTA-TCGGAGCAGAGGAAGCCTTTAAGTTTC 758
Query 762 TTTCACAGGCTTGGGGTGTCTTCTCTGACAAGGCAAAGAGAGCTGACTATGACCTGAAGA 821
|||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 759 TTTCGCAGGCATGGGGTGTGTTCTCTGACAAGGCAAAGAGAGCTGACTATGACCTGAAGA 818
Query 822 GGAATGTGGGATTGTATAAGGGAGGAGGAGCATCATCGTCAAGGCCTGCAACCAATGGGT 881
|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
Sbjct 819 GGAATGTGGGATTGTATAAGGGAGGAGGGGCATCATCATCAAGGCCTGCAACCAATGGAT 878
Query 882 TTCAGAAAGTTACTAAAGCTAGCGGTAACACAACCAAAGTAAAGAGTTCAAAGAGAGGTA 941
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 879 TTCAGAAAGTTACTAAAGCTAGCGCTAACACAACCAAAGTAAAGAGTTCAAAGAGAGGTA 938
Query 942 TAAAACGGGCAAGTGATGCCTCTGCTGCCGCTACTACTTCTACCTCGGCCCAGAAAACAA 1001
|||||||||||||||| |||||||||||||||||| | |||| ||||||||||||||||
Sbjct 939 TAAAACGGGCAAGTGACGCCTCTGCTGCCGCTACT-C--CTACTTCGGCCCAGAAAACAA 995
Query 1002 CTGCTGATGGGACCTTTTGGACTGTATGCCGTACTTGCAGAACACAGTATGAATATCATA 1061
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 996 CTGCTGATGGGACCTTTTGGACTGTATGCCGTACTTGCAGAACACAATATGAATATCATC 1055
Query 1062 GTGTTTATCTAAATCAGAACCTCCTGTGTCCCAACTGTCGTAAGCCGTTTATAGCTGTGG 1121
|||||||||||||||| |||||| |||||||||||||||||||||| |||||||| ||||
Sbjct 1056 GTGTTTATCTAAATCAAAACCTCTTGTGTCCCAACTGTCGTAAGCCATTTATAGCGGTGG 1115
Query 1122 AAACAGATCCTCCAGGTTCAGGTTCGATTCGCAAGACCTTTCACGAGCACCAATTCGACT 1181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1116 AAACAGATCCTCCAGGTTCAGGTTCGATTCGCAAGACCTTTCACGAGCACCAATTCGACT 1175
Query 1182 CTCTCCGCCATACAACAGACGGAAGAAAGAAAAATGTACCTGGAAGAGACAACAATGGGG 1241
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1176 CTCTCCGCCATACAACGGACGGAAGAAAGAAAAATGTATCTGGAAGAGACAACAATGGGG 1235
Query 1242 TGTATGGTGAATATGATTCCTTTGAGTGGGGTG-TGTTCACTGGAACTAAAACTTCTGCT 1300
|||||||||||| |||||||||||||||||| | ||||||||||||| |||| |||||||
Sbjct 1236 TGTATGGTGAATGTGATTCCTTTGAGTGGGG-GATGTTCACTGGAACCAAAAATTCTGCT 1294
Query 1301 CATGCTACACCGACCGGGTCACGAAAAGATGAGGTTGTGCGTAGAGAGTATACCAAAAGG 1360
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1295 CATGCTACACAGACTGGGTCACGAAAAGATGAGGTTGTGCGTAGAGAGTATACCAAGAGG 1354
Query 1361 ACGGCTGGTCCTTCATCAACAATTCCTCCAAAAAGAAGAAAGGTTATGGAAAATGCAGTT 1420
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1355 GTGGCTGGTGTTTCATCAACAATTCCTCCAAAAAGAAGAAAGGTTACGGAAAATGCAGTT 1414
Query 1421 GCGGGTGGCAACATTGCAAGTTGTCTTGCTCCCAAGTCCACTGGTGTAAAAGAAGTTTCT 1480
|| |||| |||||||||||||||| |||||||||||||||| |||| ||||||| |||||
Sbjct 1415 GCTGGTGCCAACATTGCAAGTTGTTTTGCTCCCAAGTCCACCGGTGCAAAAGAAATTTCT 1474
Query 1481 GAGGACGAGCTGAAGAATTTATTGAAGAAGAAAGCTAAATCAGTAATCAGCAGAAACCTG 1540
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1475 GAGGATGAGCTGAAGAATTTATTGAAGAAGAAAGCTAAATCAGTAATCAGCAGAAACCTG 1534
Query 1541 CCAG-AGTTATGCACCATCGTTGCTGAAACTGAAACTAACG-----GAA-GGGGAATGGA 1593
|||| | |||||||||||||||||||||||||||||| ||| ||| ||||||||||
Sbjct 1535 CCAGGA-TTATGCACCATCGTTGCTGAAACTGAAACTGACGCAAACGAAAGGGGAATGGA 1593
Query 1594 AACTGAGGATCTCAATGGTTTCAATGCAGGTTCTTCAGTAAACAAAAATGCCATTGAATC 1653
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1594 AACTGAGGATCTCAATGGTTTCATTGCAGGTTCTTCAGTAAACAAAAATGCCATTGAATC 1653
Query 1654 ATGCTGCATG-A----AT--A-----CT---G--AC--A-A-GGAATTGAATTCACTGGG 1692
||||||||| | || | || | || | | ||| |||||||| |||||
Sbjct 1654 CTGCTGCATGGACTCCATTGAGGATACTTCTGCTACTGACAAGGATTTGAATTCCCTGGG 1713
Query 1693 AGCCTTGACATTAGATGTTACTGCGCCGGATTTTTGTGACTTTGACAAGGATCGAACTGA 1752
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1714 AGCCTTGACATTAGATGTTACTGCTCCAGATTTTTGTGACTTTGACAAGGATCGAACTGA 1773
Query 1753 AAAGTCAGTTAAGGATAACCAGATATGGGCTTTTTACGATTCTCATGAAGGTCTGCCTCG 1812
||||||| ||| |||| ||||| ||||||||||||||||||||| |||||| |||||||
Sbjct 1774 AAAGTCAATTAGGGATGACCAGGTATGGGCTTTTTACGATTCTCTTGAAGGGATGCCTCG 1833
Query 1813 ATCATATGCCTTGATACATAATGTTATCTCCGTAGATCCATTCAAGGTGCGTATGAGTTG 1872
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1834 ATCATATGCCTTGATACATAATGTTATCTCCGTAGATCCATTCAAGGTGCGAATGAGTTG 1893
Query 1873 GCTTACTCCAGTAACAAACGGTGAGCCTAGCTCAACGAATTGGCTTGGTTTTGGTATACC 1932
||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||
Sbjct 1894 GCTTACTCCAGTAACAAACAGTGAGCTTAGCTCAACAAATTGGCTTGGTTTTGGTATACC 1953
Query 1933 AAAAAGTTGTGGAGGTTTCAGAGTTAGGAAAACACTAATCTACAGGTCACCTTACAGTTT 1992
||||||||||||||||| |||||||||||||| | ||| | ||||||||||||||||||
Sbjct 1954 TAAAAGTTGTGGAGGTTTTAGAGTTAGGAAAACCCAAATATGCAGGTCACCTTACAGTTT 2013
Query 1993 CTCACACAAAGTAAACCTGGTCAAAGGCAATCATGGGGAATTCCTTATATATCCTAGAAC 2052
||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 2014 CTCACACAAAGTAAACCTGGTCAAAGGCAGTCATGGGGAATTTCTTATATATCCTAGAAG 2073
Query 2053 AGGCGATGTCTGGGCTCTGTATCGGAAATGGTCCCCTGACTGGAACTATCTTACAGGAGT 2112
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2074 AGGCGATGTATGGGCTCTGTATCGGAAATGGTCCCCTGACTGGAACTATCTTACAGGAGT 2133
Query 2113 CGAAACAGTTGAGTACGATATAGTTGAAGTAGTTGAAGGATACACAGAGGAATATGGTGT 2172
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2134 CGAAACAATTGAGTACGATATAGTTGAAGTAGTTGAAGGATATACAGAGGAATATGGTGT 2193
Query 2173 GGTAGTGGTTCCTCTGGTTAAAGTTGCTGGTTTCAAAGCCGTGTTTCACCATCATTTGGA 2232
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2194 GTTAGTGGTTCCTCTGGTTAAAGTTGCTGGTTTCAAAGCCGTGTTTCACCATCATTTGGA 2253
Query 2233 TTCCAAAGAAACCAAAAGGTTCCTTAGGGATGAAATTTCGAGATTCTCTCACAAGATACC 2292
| |||||||||| | |||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 2254 TCCCAAAGAAACTAGAAGGATCCTTAGGGATGAAATTTCAAGATTCTCTCACAAGATACC 2313
Query 2293 GTCTTACTTGCTGACAGGTCAAGAAGCACCCGGTGCACCCAGAGGTTGCAGACAGCTTGA 2352
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2314 GTCTTACTTGCTCACAGGTCAAGAAGCACCCGGTGCACCCAGAGGTTGCAGACAGCTTGA 2373
Query 2353 CCCGGCAGCAACACCGTCACAGCTTCTTCAGGCTATCGATGATTATCGGTAA 2404
|||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2374 CCCGGCAGCAACACCGTCTCAGCTTCTTCAGGCTATCGATGATTATCGGTAA 2425
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94692349070
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5