BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25565.1
Length=621
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932709 jgi|Araly1|932709|scaffold_400697.1 547 3e-155
> Ahg932709 jgi|Araly1|932709|scaffold_400697.1
Length=685
Score = 547 bits (296), Expect = 3e-155
Identities = 435/501 (87%), Gaps = 14/501 (3%)
Strand=Plus/Plus
Query 1 ATGGAGACTGGAGATATGAAATTCGCTATCACTACGAAGA--T--ATTC--AGTCAAACC 54
||||||||||||||| ||||| ||| |||||||||||||| | | || | |||||||
Sbjct 21 ATGGAGACTGGAGATTTGAAAATCGATATCACTACGAAGACGTACAGTCAAACTCAAACC 80
Query 55 ACATATTTACCCTTGAGCCTAAACAACACTGTTTGCATCATCAATCTCCGTCAACAATTC 114
||| ||||||| ||||||| ||||| |||||| |||||||||| |||||||||||
Sbjct 81 TCATCTTTACCCCTGAGCCT---CAACATTGTTTG---CATCAATCTCTGTCAACAATTC 134
Query 115 AAGAGATATGTGATTGACAAATCCAATGGAAGTATCACTTTTAATGGATTGTATCCAGGA 174
|||| | |||||||||||||||| ||||||| |||| |||| |||||| ||||||| |
Sbjct 135 GAGAGGTTTGTGATTGACAAATCCGATGGAAGCGTCACCTTTACTGGATTTTATCCAGCA 194
Query 175 CCTCCTCTCCCCATCTCTCAAATCCGTTTGAATCTCTTAAACTACAAATTCACTCCGTTT 234
||| ||||||| ||||||||||| | ||||||||||||||||||| | |||||| |||||
Sbjct 195 CCTTCTCTCCCTATCTCTCAAATTCTTTTGAATCTCTTAAACTACGAGTTCACTACGTTT 254
Query 235 CATCTCTTTCCGCTTCTTGATTCTCGTCTCCATGATCCTTCCTTGTCCAAATATATCGCT 294
||| ||||||||||||| |||| |||||||||||||||||||||||| |||||||||||
Sbjct 255 CATATCTTTCCGCTTCTCAATTCCCGTCTCCATGATCCTTCCTTGTCCGAATATATCGCT 314
Query 295 GAGGTAATCACTGGTCAAGCGAGTTTAAGCGTTGGG-TTTCTACAACGGTTGTTCATGTT 353
||||||||| ||| || ||||||| ||||||||||| ||| |||||| |||||||||||
Sbjct 315 GAGGTAATCGCTGCTCGAGCGAGTCTAAGCGTTGGGATTT-TACAACCGTTGTTCATGTC 373
Query 354 CGTTAACGTCGTTTTAACGCAAGAAGTGTTCTCAGTGATTCCTGTTTCTTGTCTTCCTAA 413
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 374 CGTTAACGTAGTTTTTACGCAAGAAGTGTTCTCAGTGATTCCTGTTTCTTGTCTTCCCAA 433
Query 414 AGAAGAAACTCAAGAAGTAGAAGACGAATCGACATGTCCTATATGTTTGGAGAATTTTTT 473
||||||||||||||||| ||| |||||||| |||||| | |||||||||||| |||||||
Sbjct 434 AGAAGAAACTCAAGAAGAAGAGGACGAATCAACATGTTCGATATGTTTGGAGGATTTTTT 493
Query 474 GAACGATTACGTCAACGATGA 494
|||| || || ||| |||||
Sbjct 494 GAACTATGGCGACAAAGATGA 514
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22721258532
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5