BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25570.1
Length=1129
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481407 jgi|Araly1|481407|fgenesh2_kg.4__467__AT2G25570.3 1513 0.0
> Ahg481407 jgi|Araly1|481407|fgenesh2_kg.4__467__AT2G25570.3
Length=959
Score = 1513 bits (819), Expect = 0.0
Identities = 916/963 (95%), Gaps = 5/963 (1%)
Strand=Plus/Plus
Query 42 AAAATTCTCTCCGGTTAGGTTTCTTCTCCGGCTAAATCATGTTTCGTCGTTTAATTCTCC 101
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1 AAAATTCTCTCCGGTTAGGTTTCTTCTCCGGCTAAATCATGTTTCGTCGTCTGATTCTCC 60
Query 102 GGCAAGCAGCCGCCGTCGCCGCGGAATCGAAGATTGCTTGTCATCATACTGTTCATGGAT 161
|||||||||||||||| ||||||||||||||||||||| || | ||| | |||||||||
Sbjct 61 GGCAAGCAGCCGCCGTTGCCGCGGAATCGAAGATTGCTAGTGACCAT-C--TTCATGGAT 117
Query 162 TCGAACAGCGAAGAGGATTACACAGTAGGAATGAGAAGGCAATGGAGTATGTAGCCAAAG 221
|||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 118 TCGATCAGCGAAGAGGATTACACAGTAGGAACAAGAAAGCAATGGAGTATGTAGCCAAAG 177
Query 222 GATGGAGCGCGATTAAAGAAGTAGAGAGAGTTATCGATTACTGTGAACTCAATGATCGTC 281
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 178 GATGGAGCGCGATTAAGGAAGTAGACAGAGTTATCGATTACTGTGAACTCAATGATCGTC 237
Query 282 GTCTTATTCCTCTCCTCAGGGGAGCTAAAGAGAACTTTGAACTTGCTCTGGAAGCTGATA 341
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 GTCTAATTCCTCTCCTCAGGGGAGCTAAAGAGAACTTTGAACTTGCTCTGGAAGCTGATA 297
Query 342 ATTTGAACACTCATGCTAGGTATTGGCTTTCCAAGTTGCACCTGAAGTACCATGTTCCTG 401
||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||
Sbjct 298 ATTTGAACACTCATGCTAGATATTGGCTTTCCAAGTTGCACTTGAAGTATCATGTTCCTG 357
Query 402 GAGCTTGTAAAGCTGTGGGAGCTGCTTTGCTTGTCGAAGCTGCAGACATGGGTAATGCAG 461
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GAGCGTGTAAAGCTGTTGGAGCTGCTTTGCTTGTCGAAGCTGCAGACATGGGTAATGCAG 417
Query 462 ATGCTCAATATGAGCTAGGGTGTCGTTTAAGAGTCGAGAATGATCATGTCCAGTCGGATC 521
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 418 ATGCTCAATATGAGTTAGGGTGTCGTTTAAGAGTCGAGAATGATCATGTCCAATCGGATC 477
Query 522 AACAGGCGTTTCACTATATAGAGAATGCTGTTGATCAGCTACATCCAGGTGCCCTCTATC 581
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 478 AACAGGCGTTTCACTATATAGAGAATGCTGTTGATCAGCTGCATCCAGGTGCCCTCTATC 537
Query 582 TTTTAGGAATAGTGTATCTGACAGGAGACTGTGTGAAGCAAGATGTGGATTCAGCTATAT 641
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 538 TTTTAGGAATAGTGTATCTGACGGGAGACTGTGTGAAGCAAGATGTGGATTCAGCTATAT 597
Query 642 GGTGTTTCCATAGGGCTTCAGAGAAGGGACATGCTGGTGCTGCTATAGCATATGGATCTC 701
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 598 GGTGTTTCCATAGGGCTTCAGAGAAGGGACATGCCGGTGCTGCTATAGCGTATGGATCTC 657
Query 702 TTTTACTTAGAGGTGTGCAAGTCCCAGAATCTCTAACAAAATTGAACGTCGTGGGAGTTT 761
||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 658 TTTTACTTAGAGGCGTGCAAGTCCCAGAATCTCTTACAAAATTGAACGCCGTGGGAGTTT 717
Query 762 CACCTCCCAAGAGAGCAAGAAAGAACCTGGAAAATCCGGAGATGAATCCATTAGAGATGG 821
|||| ||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 718 CACCGCCCAAGAGATCAAAAAAGAACCTGGAAAATCTGGAGATGAATCCATTAGAGATGG 777
Query 822 CAAAAGAACAGTTCCAAATCGCTGCAAGAGCAGGGTGCGATCTAGGGCTGAAATGGCTGC 881
||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||
Sbjct 778 CAAAAGAACAGTTCCAAATGGCTGCAAGAGCAGGGTGCGATCTGGGGCTGCAATGGCTGC 837
Query 882 AAAGGGTGGAGCAAGAAGAGAAACTTCTTATGAGGGAACAAGATAACGAATGTGCCTATG 941
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 838 AAAGGGTGGAGCAGGAAGAGAAACTTCTTATGAGTGAACAAGATAACGAATGTGCCTATG 897
Query 942 TATGATGCATCTGCGTATGTAATACTCATGTCTCTCATGAAGCGA-TCATCAAGCAGCTT 1000
||||||||| |||| ||||||||||| | || |||| ||| |||| ||||||||||||||
Sbjct 898 TATGATGCA-CTGCATATGTAATACTTAAGTGTCTCGTGACGCGAATCATCAAGCAGCTT 956
Query 1001 AAG 1003
|||
Sbjct 957 AAG 959
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42087700368
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5