BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25580.1
Length=2194
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932711 jgi|Araly1|932711|scaffold_400699.1 2632 0.0
> Ahg932711 jgi|Araly1|932711|scaffold_400699.1
Length=1870
Score = 2632 bits (1425), Expect = 0.0
Identities = 1748/1899 (92%), Gaps = 42/1899 (2%)
Strand=Plus/Plus
Query 69 CTTTGGTCTCTGCTCTTCTGATGTATACGAAGTTATCATTGTTCCCCAGAAAGAGTTCTT 128
|||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||
Sbjct 1 CTTTGGTCTCTGCTCTTCTGATGTATACGAAGATATCATTGTTACACAGAAAGAGTTCTT 60
Query 129 CACTACTCTCCATAGCCAACGAGAAAAGGATCCATCAATTTCTGAGGAATCTCTGCACGG 188
|| | |||||||||||||||||||||| |||||||| ||||||| ||||||||||||||
Sbjct 61 CA-T--TCTCCATAGCCAACGAGAAAAGAATCCATCAGTTTCTGAAGAATCTCTGCACGG 117
Query 189 CTGTTGAAAGGTTAGATTTTGGAAACTCTAATGATTCGTCAGAAATGAACCCTAGAGAAG 248
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 118 CTGTTGAAAGGTTAGATTTTGGAAACTCTAATGATTCGTCACAAATGAACCCTGGAGAAG 177
Query 249 GGTAT-AATGGACGAATCCAGAACCGAACTGGGAGCTCTGGGGAAGTTAGTGAAAGTATT 307
||| | ||||| ||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 178 GGT-TCGATGGAGGAAGCCAGAACCGAACTGGGATCTCTGGGGAAGTTAGTGAAAGTATT 236
Query 308 CACACACAAAGTCAGAGTCT-GGGTTCGAATCAGGGAAGAAATGAGCAGTCATGGAAGCA 366
|||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||
Sbjct 237 CACACACAAAGTCAGAGT-TGGGGTTCGAATCAGGGAAGAAATGAGGAGTCATGGAAGCA 295
Query 367 GAGTCCTAGTTTGTCTAATTCTCAAGTCCAATCTCAATATCAAGGCAATTGGTACGGGAC 426
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 296 GAGTCCTAGTTTGTCTAATTCTCAGGTCCAATCTCAATATCAAGGCAATTGGTATGGGAC 355
Query 427 AAACTCTGATTATCAGAATGGTGTAGGATCGTCTTGGCATTCAGGTAAGACTATTGATCG 486
|||| |||| | | | || | |||||||||||||| |||| ||||| |
Sbjct 356 AAACCCTGA-T-T----A-----TA--A-----TTGGCATTCAGGTACGACTGTTGATAG 397
Query 487 CGAGGTATATGACATGATTATGGAATTTGATGAATATTGCATACAAGAGAATGTAAGAGT 546
|||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 398 CGAGGTATATGATATGATTGGGGAATTCGATGAATATTGCATACAAGAGAATGTAAGAGT 457
Query 547 GGCCTTAACGACTATGGAAAAACTGGAGAAGAAGGGTTATGTTATGGATTTTGTTAGACT 606
|||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||
Sbjct 458 GGCCTTAACGACTATGGAAAAATTGGAGAAGAAGGGTTATGTTATGGATTTAGCTAGACT 517
Query 607 CTTAAAGTTAACACAGCTATGTAGGGAAGGAAATGTTTATTACGAAGTCAGTGTTTTAGA 666
|||| ||||||||||||||||| ||||| |||||||| |||||||||||||||||||||
Sbjct 518 TTTAAGGTTAACACAGCTATGTATGGAAGAAAATGTTTTTTACGAAGTCAGTGTTTTAGA 577
Query 667 AGAAGCCAAGGTTTCTGTTCTAGCGAAGATCAGAGCTTTAGTT---AACAATTTAGAAGC 723
||||||||||||||||||||| | ||||||||||||||| ||| ||||||||||| ||
Sbjct 578 AGAAGCCAAGGTTTCTGTTCTTGGGAAGATCAGAGCTTTGGTTAACAACAATTTAGATGC 637
Query 724 GAATTATTTGAAGTATTATACTGACATCATGATTGAGGAATATGATGCATTTTGCAAACA 783
||||||||||| |||||||||||||||||||||| |||||| ||| | |||||| || ||
Sbjct 638 GAATTATTTGATGTATTATACTGACATCATGATTAAGGAATTTGACGAATTTTGTAAGCA 697
Query 784 CGGTAAAGTGAAAAAAGCGTTGTATACTATAGATATATTGGCAAGTATGAATTATGTTGT 843
||||| |||||||| || |||||||||||||||| ||||| ||| |||||| |||||||
Sbjct 698 AGGTAAGGTGAAAAAGGCATTGTATACTATAGATACATTGGAAAGCATGAATCATGTTGT 757
Query 844 GGA-TTTGAGTAGACTTTTACGGTTAGCGAAGATTTGTGGGGAAGCAGAGGGTTTACAAG 902
| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 758 -TATTTTGAGTAGACTTTTACGGTTAGCGAAGCTGTGTGGGGAAGCAGAGGGTTTACAAG 816
Query 903 AGGCCAAGACTGTTCATGGGAAGATTAGTGCTTCCGTTAGCCATTTAGATTTGAGTTCTA 962
|||||||| ||||||||||||||||||| |||||| ||||||||||||| |||||||||
Sbjct 817 AGGCCAAGGTTGTTCATGGGAAGATTAGTTCTTCCGCTAGCCATTTAGATGTGAGTTCTA 876
Query 963 ACCATGTATTGTTAGAAATGTACTCAAACTGTGGGTTGGCGAATGAAGCAGCGAGTGTTT 1022
||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 877 ACCATATATTGTTAGAAATGTACTCCAACTGTGGGTTGGCGAATGAAGCAGCGAATGTTT 936
Query 1023 TTGAGAAAATGTCTGAGAAGAATTTAGAGACTTGGTGCATTATAATAAGATGTTTTGCAA 1082
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 937 TTGAGAAAATGCCTGAGAAGAATTTAGAGACTTGGTACATTATAATAAGATGTTTTGCAA 996
Query 1083 AGAATGGTTTTGGGGAAGACGCTATTGATATGTTTAG-TCGCTTTAAAGAAGAAGGAAAT 1141
||||||||||||||||||||||||||||||||||| | ||| |||||| ||||||||||
Sbjct 997 AGAATGGTTTTGGGGAAGACGCTATTGATATGTTT-GCTCGATTTAAAAAAGAAGGAAAC 1055
Query 1142 ATACCTGATGGTCAATTATTTAGAGGAATATTCTATGCTTGTGGTATGCTAGGTGATGTT 1201
| ||| |||| ||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1056 AGACCCGATGCCCAACTATTTAGAGGAATTTTCTATGCTTGTGGTATGCTAGGTGATGTT 1115
Query 1202 GATGAGGGACTATTACACTTTGAGTCAATGTCCAGAGACTACGGCATTGCCCCTTCCATT 1261
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1116 GATGAGGGACTATTGCACTTTGAGTCAATGTCCAGGGACTACGGCATTGCCCCTTCCATT 1175
Query 1262 GAAGACTATGTAAGCCTCGTTGAGATGTATGCGTTACCCGGATTTTTAGATGAGGCTTTG 1321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1176 GAAGACTATGTAAGCCTCGTTGAGATGTATGCGTTACCCGGATTTTTAGATGAGGCTTTG 1235
Query 1322 GAATTTGTGGAGAGAATGCCGATGGAGCCAAATGTTGATGTTTGGGAAACATTGATGAAT 1381
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1236 GAATTTGTGGAGAGAATGCCGATGGAGCCAAATGTTGATGTGTGGGAAACATTGATGAAT 1295
Query 1382 CTTTCTCGAGTTCATGGGAATTTAGAACTTGGAGACTACTGTGCTGAGGTTGTTGAATTT 1441
||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1296 CTTTCTCGAGTGCATGGGAATTTAGAACTTGGAGACCGGTGTGCTGAAGTTGTTGAATTG 1355
Query 1442 TTAGATCCTACACGGTTGAACAAACAATCTCGGGAAGGATTTATACCGGTTAAGGCATCA 1501
|||||||||||||||||| ||||||||||||||||||||||| |||| || |||||||||
Sbjct 1356 TTAGATCCTACACGGTTGGACAAACAATCTCGGGAAGGATTTCTACCTGTCAAGGCATCA 1415
Query 1502 GATGTTGAGAAAGAGAGTCTAAAGAAAAGGTCAGGAATTCTTCACGGAGTCAAAAGTA-G 1560
|||||||||||||||| |||||||||||||||||||||||||||||| || ||||||| |
Sbjct 1416 GATGTTGAGAAAGAGATTCTAAAGAAAAGGTCAGGAATTCTTCACGGCGTGAAAAGTAAG 1475
Query 1561 TATGCAGGAA-TTTAGGGCAGGGGATACCAATCTTCCTGAGAATGATGAACTGTTCCAGC 1619
|||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1476 -ATGCAG-ATCTTTAAGGCAGGGGATACCAATCTTCCTGAGAATGATGAACTGTTCCAGC 1533
Query 1620 TATTGAGGAATTTAAAGATGCATATGGTGGAAGTGGGCTATGTCGCTGAAACAAGAA--T 1677
||||||||||| |||||||||||||||||||| |||||||||||||||| |||| || |
Sbjct 1534 TATTGAGGAATCTAAAGATGCATATGGTGGAAATGGGCTATGTCGCTGATACAA-AACCT 1592
Query 1678 GGCTTTGCATGATATAGACCAAGAGAGTAAAGAGACATTACTTCTTGGTCATAGCGAGAG 1737
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1593 G-CTTTGCATGATATAGACCAAGAGAGTAAAGAGACAGCACTTCTTGGTCATAGCGAGAG 1651
Query 1738 AATAGCTTTTGCTCGTGCTGTTCTCAACAGCGCC-CCCCGTAAACCTTTCACTGTGATCA 1796
|||||||||||||||||||||||| |||| | || ||||||||||||||||||||||| |
Sbjct 1652 AATAGCTTTTGCTCGTGCTGTTCTTAACACC-CCGCCCCGTAAACCTTTCACTGTGATGA 1710
Query 1797 AAAACCTTCGTGTGTGTGTTGATTGTCATAACGCATTGAAGATCATGTCAGATATAGTTG 1856
||||||||||||||||||||||||||||||| |||| |||||| ||| ||| ||||||||
Sbjct 1711 AAAACCTTCGTGTGTGTGTTGATTGTCATAATGCATGGAAGATAATGGCAGTTATAGTTG 1770
Query 1857 GTAGAGAAGTGATCACGCGAGATATAAAGAGATTCCACCAAATGAAAAACGGGGCTTGCA 1916
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1771 GTAGAGAAGTGATCATGCGAGATATAAAGAGATTCCACCATATGAAAAACGGGGCTTGCA 1830
Query 1917 CCTGTAAAGATTATTGGTGATTAACGACAAACCTTGAGG 1955
|||||| || |||||||||||||| |||||||||||||
Sbjct 1831 GCTGTAATGACTATTGGTGATTAACAACAAACCTTGAGG 1869
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82579651160
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5