BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G25590.1

Length=1312
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg344161 jgi|Araly1|344161|fgenesh1_pg.C_scaffold_4000503           569    1e-161


> Ahg344161 jgi|Araly1|344161|fgenesh1_pg.C_scaffold_4000503
Length=1134

 Score =  569 bits (308),  Expect = 1e-161
 Identities = 373/404 (92%), Gaps = 5/404 (1%)
 Strand=Plus/Plus

Query  167  ATGAGATTCAGAAGAGGAAGTAGAGTTGAGGTGTTTAGCATCAAAGAAGCCTCTTATGGT  226
            ||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||
Sbjct  1    ATGAGATTCAGAAGAGGAAGTAGAGTTGAGGTGTTTAGCATCAAAGAGGCGACTTATGGT  60

Query  227  GTGTGGCGATCAGCGGAGATTATATCTGGTAATGGTCACACTTACAATGTTAGATATTAC  286
            | |||||||||||||||||||||||| ||||||||||||||||||  |||||||||||||
Sbjct  61   GCGTGGCGATCAGCGGAGATTATATCGGGTAATGGTCACACTTACGGTGTTAGATATTAC  120

Query  287  TCTTTTGAAATTGCTAACAATGAGGTTGTTGAGGATAGAGTTCCAAGGAAGATAATTAGG  346
            ||||| ||| |||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct  121  TCTTTCGAACTTGCTAACAATGAGGTAGTTGAGGAAAGAGTTCCAAGGAAGATAATTAGG  180

Query  347  CCGTGTCCTCCGCAAGTAGATGTTGATAGATGGGAAGCTGGTGAATTGGTTGAGGTTCTT  406
            ||||||||||||||| ||||||| ||||||||||||||||||||||| || |||||||||
Sbjct  181  CCGTGTCCTCCGCAAATAGATGTAGATAGATGGGAAGCTGGTGAATTAGTGGAGGTTCTT  240

Query  407  GATAATAATATTTCATGGAAAACTGCTACTGTCTTGGAGGTGTTATCTGGAAGATATTAT  466
            ||||||| | || | |||||||||||||| |||||||||| |||||||||||||||||||
Sbjct  241  GATAATA-T-TT-CTTGGAAAACTGCTACGGTCTTGGAGGAGTTATCTGGAAGATATTAT  297

Query  467  GTTGTTCGGTTACTTGGTGCTAAAGCAGAACTCACGGTTCACAAAGTT-TACCTCAGGGC  525
            || ||||||||||||||||| ||||| ||||| || |||||||||||| | | |||||||
Sbjct  298  GTCGTTCGGTTACTTGGTGCCAAAGCGGAACTTACAGTTCACAAAGTTATTC-TCAGGGC  356

Query  526  TAGACAATCTTGGCAAGATGAAAGATGGGTTATGATTGGAAAGG  569
            | ||||||||||||| ||||||||||||||||||||||||||||
Sbjct  357  TCGACAATCTTGGCAGGATGAAAGATGGGTTATGATTGGAAAGG  400


 Score =  243 bits (131),  Expect = 3e-63
 Identities = 139/143 (97%), Gaps = 0/143 (0%)
 Strand=Plus/Plus

Query  567  AGGAGACTAGTGTTGCTTCTTTAAGAGTGTTGAAGAGACCTTCACCATGTGATTGGGCGG  626
            |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct  485  AGGAGACTAGTGTTGCTTCTTTAAGAGTGTTGAAGAGACCTTCACCCTGTGATTCGGCGG  544

Query  627  AGTCTGCTGAATCATGCACTAGAAGTCCTAAGAAGATACGATCATTGGAGGAAGAAGGAC  686
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  545  AGTCTGCTGAATCATGCACGAGAAGTCCTAAGAAGATACGATCATTGGAGGAAGAAGGAC  604

Query  687  ACCAGCACCGGTTTGCTTCTTCT  709
            ||||||||||||||||||| |||
Sbjct  605  ACCAGCACCGGTTTGCTTCGTCT  627


 Score =  147 bits (79),  Expect = 3e-34
 Identities = 85/88 (97%), Gaps = 0/88 (0%)
 Strand=Plus/Plus

Query  817  GGTGCCGACTCTTGTAGTAGTGATGCTGAATCTTCAAAAGAAGCATCTGGATGCAGAGAT  876
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| 
Sbjct  850  GGTGCCGACTCTTGTAGTAGTGATGCTGAATCTTCAAAAGAAGCATTTGGATGCAGAGAG  909

Query  877  GAAGCTAGGCGAAAACATTCATTATCAG  904
            ||||||| ||||||||||||||||||||
Sbjct  910  GAAGCTACGCGAAAACATTCATTATCAG  937



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 49064194179


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5