BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25605.1
Length=867
Score E
Sequences producing significant alignments: (Bits) Value
Ahg900004 jgi|Araly1|900004|Al_scaffold_0004_654 928 0.0
> Ahg900004 jgi|Araly1|900004|Al_scaffold_0004_654
Length=600
Score = 928 bits (502), Expect = 0.0
Identities = 571/604 (95%), Gaps = 5/604 (1%)
Strand=Plus/Plus
Query 99 ATGTCGTTTGGGTCTCTCGTGCTTCCATCTCCACCTTCCTCCTTGTCTGC-AAATGTCAA 157
||||||||| |||| ||||||||||||||||||||||||||||| ||||| ||| ||||
Sbjct 1 ATGTCGTTTTGGTCACTCGTGCTTCCATCTCCACCTTCCTCCTTATCTGCTAAA-CTCAA 59
Query 158 GCATTTCAATGGCTACGGTAGGCTTAATCGTAATCTCGTGCGAGCTTCTTCGTCCGATGT 217
| |||||||| || ||| |||||| ||||||||||||| |||||||| | ||||||||
Sbjct 60 ACCTTTCAATGACTCCGGAAGGCTTCATCGTAATCTCGTACGAGCTTC-T--TCCGATGT 116
Query 218 TCCCGATTTCCTCTCTGCCGATTGGTTGGAGAGCCGTAGGAAACGACCTTTTGGCCCCAG 277
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 117 TCCCGATTTCCTCTCTGCCGATTGGTTGGAGAGTCGTAGGAAACGACCTTTTGGCCCCAG 176
Query 278 ACTTGATTTTAGTGCAGAAGACGCTGTTCGACATCAGCTTGATGCATTGAAGTATAATGA 337
||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||
Sbjct 177 ACTTGATTTTAGTGCGGAAGAGGCCGTTCGACATCAGCTTGATGCATTGAAGTATAATGA 236
Query 338 CCATCCTCGTGATGATTATGGCATTGAGGTCATGTATCGGTTTGCTGGATTCGATCCATT 397
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 237 CCATCCTCGTGATGATTATGGCATCGAGGTCATGTATCGGTTTGCTGGATTCGATCCATT 296
Query 398 TGAGAGATCCACCTATTTCGGTCCTTTCTTTGATCTTGGACAGTTTGAAAGGTTTAGGCG 457
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 297 TGAGAGATCCACCTATTTCGGTCCTTTCTTTGATCTAGGACAGTTTGAAAGGTTTAGGCG 356
Query 458 TATTTTTCATCACTCGTCTTACCGTGTGTTGCTTGGTCACAAGGATAGAAAACTTTTAAG 517
||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||
Sbjct 357 TATTTTTCATCACTCGTCTTACCGTGTGTTGCTTGGTCACAAGGACAGAAAAATCTTAAG 416
Query 518 CAGTTTGTTCGTGGAGGAGAATCGTTTCAAGCAGAGGATCTGGATTCAGGGAAATCGACC 577
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 417 TAGTTTGTTCGTGGAGGAGAATCGTTTCAAGCAGAGGATTTGGATTCAGGGAAATCGACC 476
Query 578 TGAAGAGGAAGAGATATTTGAATTCACAATGTTCCAGCGAATAGGCGGTTCATGGGATGG 637
||| || |||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 477 TGAGGAAGAAGAGATATTTGAATTCACAATGTTCCAGCGGATAGGTGGTTCATGGGATGG 536
Query 638 ATATTGGTTGACAGAAAGCTTGCTTCATGACGGAGATGTGTTTTCAGGAGGGATGGCTTA 697
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TTATTGGTTGACGGAAAGCTTGCTTCATGACGGAGATGTGTTTTCAGGAGGGATGGCTTA 596
Query 698 CTGA 701
||||
Sbjct 597 CTGA 600
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32099496114
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5