BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25610.1
Length=868
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481412 jgi|Araly1|481412|fgenesh2_kg.4__472__AT2G25610.1 1112 0.0
Ahg944707 jgi|Araly1|944707|scaffold_700936.1 676 0.0
> Ahg481412 jgi|Araly1|481412|fgenesh2_kg.4__472__AT2G25610.1
Length=814
Score = 1112 bits (602), Expect = 0.0
Identities = 757/825 (92%), Gaps = 37/825 (4%)
Strand=Plus/Plus
Query 12 ATTCATATCAAAGAGAT--AGAGAGAAAATGTCC-G-G-TGTGGCTATTCATGCGAGTTC 66
||||| ||| ||||||| ||||||||||||||| | | |||||||||||||||||||||
Sbjct 1 ATTCAAATCGAAGAGATAGAGAGAGAAAATGTCCGGTGTTGTGGCTATTCATGCGAGTTC 60
Query 67 ATGGGGCGCGGCTCTGGTGAGAATCTCCCCGTACACTTTCTCCGCCATCGGAATCGCCAT 126
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 61 ATGGGGCGCGGCTCTGGTGAGAATCTCTCCGTACACTTTCTCCGCCATCGGAATCGCCAT 120
Query 127 CTCCATCGGCGTCTCTGTTCTTGGTGCTGCCTGGGGAATTTACATTACCGGAAGTAGTTT 186
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 121 CTCCATCGGCGTCTCCGTTCTTGGTGCCGCCTGGGGAATTTACATTACCGGAAGTAGTTT 180
Query 187 GATCGGTGCCGCCATTGAAGCTCCTCGAATCACTTCCAAGAATCTCATCAGTGTAATCTT 246
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 181 GATCGGTGCCGCCATTGAAGCTCCTCGTATCACTTCCAAGAATCTCATCAGTGTAATCTT 240
Query 247 CTGTGAAGCCGTGGCTATATACGGTGTTATTGTGGCAATCATATTACAAACGAAGTTGGA 306
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 241 TTGTGAAGCGGTGGCTATATACGGTGTTATTGTTGCAATCATATTACAAACGAAGTTGGA 300
Query 307 GAGTGTACCATCATCAAAGATGTATGATGCTGAGTCTCTAAGAGCTGGATATGCAATCTT 366
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GAGTGTACCATCATCGAAGATGTATGATGCTGAGTCTCTAAGAGCTGGATATGCAATCTT 360
Query 367 TGCTTCTGGAATCATTGTTGGATTCGCAAACCTTGTATGCGGGTTATGTGTAGGAATCAT 426
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 361 TGCTTCTGGAATCATTGTTGGATTCGCAAACCTTGTATGCGGATTATGTGTAGGAATCAT 420
Query 427 TGGAAGCAGTTGCGCATTGTCTGATGCTCAGAACTCGACGCTCTTTGTTAAGATTCTTGT 486
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TGGAAGCAGTTGTGCGTTGTCTGATGCTCAGAACTCGACGCTCTTTGTTAAGATTCTTGT 480
Query 487 GATTGAGATCTTTGGGAGTGCTCTCGGGTTATTTGGAGTTATCGTTGGGATTATTATGTC 546
||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 481 GATTGAGATCTTTGGTAGTGCTCTCGGGTTGTTTGGAGTTATCGTTGGGATCATTATGTC 540
Query 547 AGCTCAAGCTACATGGCCTACAAAATAGAGATATATAAACTGGTAACTTATGGACTTGTA 606
|||||||||||||||||||||||||||||||||||||||||||| | | ||
Sbjct 541 GGCTCAAGCTACATGGCCTACAAAATAGAGATATATAAACTGGTA--T-A----CT---- 589
Query 607 CTCTATAGTCTATACATTCTATGATCTATTTTTCAAAGTTCCGGATAAAAATTACA-CTT 665
|| ||| || | || ||||||||||||||||| | ||||| | || || | |||
Sbjct 590 CT--ATAC-CT-T---TT--ATGATCTATTTTTCAAAATCCCGGA-AGAATTTTTATCTT 639
Query 666 CTTTGCTGTTATATCTCTTGTGTAGAAGA-AAAACCATGTGTGATTAAGATTCTCCTTGA 724
|||||||| |||||||| |||||||||| ||||||||||||||||||||||||| | |
Sbjct 640 CTTTGCTGCTATATCTC--GTGTAGAAGACAAAACCATGTGTGATTAAGATTCTC-T-G- 694
Query 725 GTTGAATCCCTATTTTTTGGTAATGTTCAAATTTGGTAATAAGTCACTTGGAGAAACCTC 784
| |||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 695 -T-GAATCCTTATTTTTTGGTAATGTTCAAACTTGGGAATAAGTCACTTGGAGAAACCTC 752
Query 785 TTCATGCTTGTACTCTTTGGTTCTCTTT-TGACAAATGATAAGAG 828
|||||| ||||| ||||||||||| ||| |||||||| |||||||
Sbjct 753 TTCATGTTTGTATTCTTTGGTTCT-TTTGTGACAAATCATAAGAG 796
> Ahg944707 jgi|Araly1|944707|scaffold_700936.1
Length=591
Score = 676 bits (366), Expect = 0.0
Identities = 500/565 (88%), Gaps = 8/565 (1%)
Strand=Plus/Plus
Query 23 AGAGATAGAGAGAAAATGTCCGGTGT-G--GCT-AT--TCATGCGAGTTCATGGGGCGCG 76
||||| ||||||| ||||| ||||| | ||| | ||||||||| || ||||||||
Sbjct 12 AGAGAGAGAGAGAGGATGTCTGGTGTGGTTGCTCTTGGTCATGCGAGCTCGTGGGGCGCA 71
Query 77 GCTCTGGTGAGAATCTCCCCGTACACTTTCTCCGCCATCGGAATCGCCATCTCCATCGGC 136
|| ||||| || ||||| ||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct 72 GCGCTGGTAAGGATCTCGCCGTATACTTTCTCCGCAATCGGAATCGCCATCTCGATCGGC 131
Query 137 GTCTCTGTTCTTGGTGCTGCCTGGGGAATTTACATTACCGGAAGTAGTTTGATCGGTGCC 196
||||| || || ||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 132 GTCTCAGTCCTCGGTGCCGCCTGGGGAATTTACATTACGGGAAGTAGTTTGATCGGTGCG 191
Query 197 GCCATTGAAGCTCCTCGAATCACTTCCAAGAATCTCATCAGTGTAATCTTCTGTGAAGCC 256
|| || ||||||||||| |||||||||||||||||||||||||| ||||| || |||||
Sbjct 192 GCTATAGAAGCTCCTCGTATCACTTCCAAGAATCTCATCAGTGTCATCTTTTGCGAAGCT 251
Query 257 GTGGCTATATACGGTGTTATTGTGGCAATCATATTACAAACGAAGTTGGAGAGTGTACCA 316
|| |||||||| ||||||||||| ||||||||| | ||||| |||||||||||||| |||
Sbjct 252 GTAGCTATATATGGTGTTATTGTTGCAATCATACTGCAAACAAAGTTGGAGAGTGTCCCA 311
Query 317 TCATCAAAGATGTATGATGCTGAGTCTCTAAGAGCTGGATATGCAATCTTTGCTTCTGGA 376
|| |||||||||||||| ||||||||||| |||||||||||||||||||| || ||||||
Sbjct 312 TCTTCAAAGATGTATGACGCTGAGTCTCTTAGAGCTGGATATGCAATCTTCGCATCTGGA 371
Query 377 ATCATTGTTGGATTCGCAAACCTTGTATGCGGGTTATGTGTAGGAATCATTGGAAGCAGT 436
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 ATCATAGTTGGATTCGCCAACCTTGTATGCGGGTTATGTGTAGGAATCATTGGAAGCAGT 431
Query 437 TGCGCATTGTCTGATGCTCAGAACTCGACGCTCTTTGTTAAGATTCTTGTGATTGAGATC 496
|| ||||||||||||||||| |||||||| ||||| || |||||||||||||||||||||
Sbjct 432 TGTGCATTGTCTGATGCTCAAAACTCGACACTCTTCGTAAAGATTCTTGTGATTGAGATC 491
Query 497 TTTGGGAGTGCTCTCGGGTTATTTGGAGTTATCGTTGGGATT-ATTATGTCAGCTCAAGC 555
|| ||||||||||||||||| ||||||||||| || |||| | |||||||| || |||||
Sbjct 492 TTCGGGAGTGCTCTCGGGTTGTTTGGAGTTATTGT-GGGAATCATTATGTCTGCACAAGC 550
Query 556 TACATGGCCTACAAAATAGAGATAT 580
|||||||| || ||||||| ||||
Sbjct 551 GACATGGCCAACGAAATAGATATAT 575
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32137619031
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5