BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25620.1
Length=1657
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481413 jgi|Araly1|481413|fgenesh2_kg.4__473__AT2G25620.1 2438 0.0
> Ahg481413 jgi|Araly1|481413|fgenesh2_kg.4__473__AT2G25620.1
Length=1546
Score = 2438 bits (1320), Expect = 0.0
Identities = 1461/1529 (96%), Gaps = 9/1529 (1%)
Strand=Plus/Plus
Query 131 AATCCATTGTTTACGAATCTCTCATCTAAAGCTACATTCTTCGTTAAATCGTTTTTAATC 190
|||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||
Sbjct 25 AATCCATTGTTTACGAATCTCTCATCTAAAGCTACATTCTCCGATAAATC-CTTTTAATC 83
Query 191 GACTCGCTCACTCGTGAGTTGACTCGTCAGCTGTTTC-CATAATTGCTTATTGAATTTTT 249
||||| || |||||||||||||||||| ||||||||| | ||||||||||| ||||||||
Sbjct 84 GACTCACTGACTCGTGAGTTGACTCGTAAGCTGTTTCTC-TAATTGCTTATAGAATTTTT 142
Query 250 ATACGATGATGTTTCAATATGGAAGAAACTAGAGGAATTTCTGATCCAGAGAATGGGAGT 309
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 143 ATGCGATGATGTTTCAATATGGAAGAAACTAGAAGAATTTCTGATCCAGAGAATGGGAGT 202
Query 310 TCGAGTTACGGCGGTAAACCGCCGAATCCACTCTCCTTCTCTTCTTCCTCCGCCGCTGCT 369
||||||||||||||||||||||||||||||||||| |||||||||||||| | | | |||
Sbjct 203 TCGAGTTACGGCGGTAAACCGCCGAATCCACTCTCTTTCTCTTCTTCCTCAG-C-C-GCT 259
Query 370 GCCGTTTACAGGCAAACCTTCGACGGCGAGCGATCGTTGGCGCCGTGTAATAAGAGGTCA 429
||||| |||| ||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 260 GCCGTATACAAGCAAAGCTTCGACGGCGAGCGATCGTTGGCTCCGTGTAATAAGAGGTCA 319
Query 430 CTGGTTCGACACTCATCTCTCGTGAAGACAATGGTGTCAGATATATCTGTTGAGAATGAG 489
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 320 CTTGTTCGACACTCATCTCTCGTGAAGACAAAGGTGTCAGATATATCTGTTGAGAATGAG 379
Query 490 TTTACTATAGAGAAGAACAAGTCTGAGTTTGTTCCTGCTACGCGTTCTGGAGCTTGGTCT 549
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 380 TTTACTTTAGAGAAGAACAAGTCTGAGTTTGTTCCTGCTATGCGTTCTGGAGCTTGGTCT 439
Query 550 GATATTGGCTCCAGGTCAAGCATGGAAGATGCTTATCTATGCGTTGATAATTTCATGGAT 609
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 GATATTGGATCCAGGGCAAGCATGGAAGATGCTTATCTATGCGTTGATAATTTCATGGAT 499
Query 610 AGCTTTGGCCTTCTGAATTCTGAGGCTGGTCCAAGTGCCTTCTATGGGGTATTTGATGGA 669
|||||||| ||||||||||||||||| |||||||||||||| || |||||||||||||||
Sbjct 500 AGCTTTGGACTTCTGAATTCTGAGGCCGGTCCAAGTGCCTTTTACGGGGTATTTGATGGA 559
Query 670 CATGGTGGGAAGCATGCCGCTGAGTTTGCATGTCACCATATACCGAGGTACATTGTTGAA 729
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 560 CATGGTGGGAAGCATGCTGCTGATTTTGCATGTCACCATATACCGAGGTACATTGTTGAA 619
Query 730 GATCAAGAGTTTCCTAGTGAAATCAATAAGGTGTTATCTTCAGCATTTCTTCAAACAGAC 789
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 620 GATCAAGAGTTTCCTAGTGAAATCAATAAGGTGTTGTCTTCAGCATTTCTTCAAACAGAC 679
Query 790 ACTGCCTTCTTAGAGGCGTGTTCATTGGATGGGAGCCTTGCTTCAGGAACTACTGCTTTG 849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 680 ACTGCCTTCTTAGAGGCGTGTTCATTGGATGGGAGCCTTGCTTCAGGAACTACTGCTTTG 739
Query 850 GCAGCTATTCTTTTTGGAAGGTCGTTGGTGGTAGCAAACGCTGGAGATTGCAGAGCAGTC 909
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 740 GCAGCTATTCTTTTTGGGAGGTCGTTGGTGGTAGCAAACGCTGGAGATTGTAGAGCAGTC 799
Query 910 TTATCCCGTCAGGGAAAAGCCATTGAAATGTCAAGAGACCACAAACCCATGAGCAGTAAG 969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 800 TTATCCCGTCAGGGAAAAGCCATTGAAATGTCAAGAGACCACAAACCCATGAGCAGTAAG 859
Query 970 GAAAGGAGACGCATTGAAGCATCGGGTGGACATGTATTCGATGGCTATCTAAATGGACAA 1029
|| || ||||||||||| |||||||||||| ||||||| |||||||||||||||||||||
Sbjct 860 GAGAGAAGACGCATTGAGGCATCGGGTGGATATGTATTTGATGGCTATCTAAATGGACAA 919
Query 1030 CTTAATGTGGCTCGAGCGCTAGGTGACTTTCATATGGAAGGCATGAAGAAGAAGAAAGAT 1089
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 920 CTTAATGTGGCTCGTGCGCTCGGTGACTTTCATATGGAAGGCATGAAGAAGAAGAAAGAT 979
Query 1090 GGTTCTGATTGTGGACCTCTAATTGCAGAGCCTGAGCTCATGACAACAAAACTAACAGAA 1149
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 980 GGTTCTGATTGTGGACCTCTCATTGCAGAGCCTGAGCTCATGACAACTAAACTAACAGAA 1039
Query 1150 GAGGATGAGTTCCTTATAATTGGGTGTGACGGGGTTTGGGATGTGTTCATGAGCCAGAAT 1209
||||| |||||||| ||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1040 GAGGACGAGTTCCTCATAATCGGGTGTGATGGGGTTTGGGATGTGTTCATGAGCCAGAAT 1099
Query 1210 GCTGTAGATTTTGCCAGAAGGAGACTACAGGAGCACAATGACCCGGTCATGTGTAGTAAG 1269
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1100 GCTGTAGATTTTGCCAGAAGGAGACTACAAGAGCACAATGACCCGGTCATGTGTAGTAAA 1159
Query 1270 GAGCTGGTTGAGGAAGCTTTGAAGAGGAAGAGTGCTGATAATGTGACGGCAGTGGTTGTG 1329
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1160 GAGCTGGTTGAGGAAGCTTTGAAGAGGAAGAGTGCGGATAATGTGACGGCAGTGGTTGTG 1219
Query 1330 TGTCTTCAGCCACAGCCACCACCGAACTTGGTAGCGCCGAGGTTGAGAGTTCACAGAAGC 1389
|||||||| |||||||||||||| ||||||||||| |||||| |||||||||||||||||
Sbjct 1220 TGTCTTCAACCACAGCCACCACCAAACTTGGTAGCACCGAGGCTGAGAGTTCACAGAAGC 1279
Query 1390 TTCTCGGCGGAGGGTTTAAAAGATTTACAGAGCTACTTGGATGGCTTGGGAAACTAATTG 1449
||||||||||||||||| |||||| ||||||||||||||||||||||||| || ||||||
Sbjct 1280 TTCTCGGCGGAGGGTTTGAAAGATCTACAGAGCTACTTGGATGGCTTGGGGAATTAATTG 1339
Query 1450 GGGGACATGAGGATGGTGACGAATGATTGAtttctctgtttttgttttgtcttttcttac 1509
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1340 GGGGACATGGGGATGGTGACGAATGATTGATT-CTCTGTTTTTGTTTTGTCTTTTCTTAC 1398
Query 1510 aattttatagtttggggtttggaggttttgttctgttAAATTCTCGCAATTTGAGTAAGT 1569
||||| ||||||| || ||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 1399 AATTT-ATAGTTTTGGTTTTGGAGGTTTTGTTCTGTTAAATTCTTGCAATTTGAGTAACT 1457
Query 1570 TATAACATGAGGCGGCATACAATAATTTATTGTTTGGTAGGATATAttttttt-GTCACT 1628
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1458 TATAACATGAGGCGGCATACAATAATTTATTGTTTGGTAGGATATATTTTTTTTGTCACT 1517
Query 1629 TTTGCATAATAATAATTCTGCTTCAGTCT 1657
|||||||||||||||||||||||||||||
Sbjct 1518 TTTGCATAATAATAATTCTGCTTCAGTCT 1546
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62125189595
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5