BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G25625.1

Length=782
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg932721 jgi|Araly1|932721|scaffold_400709.1                        730    0.0  


> Ahg932721 jgi|Araly1|932721|scaffold_400709.1
Length=499

 Score =  730 bits (395),  Expect = 0.0
 Identities = 465/499 (93%), Gaps = 3/499 (1%)
 Strand=Plus/Plus

Query  118  AAAACAGAGGAAT---AACAATGGCAGGGAGAATAAGCTGCTGTCTAAATCTTCCTCCCC  174
            |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    AAAACAGAGGAATAACAACAATGGCAGGGAGAATAAGCTGCTGTCTAAATCTTCCTCCCC  60

Query  175  TAGATTCAAATTCTGCACAATCATTAGCTTCACTGCTCAAGACAACGTCAAAGATCTCTT  234
            || ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct  61   TATATTCAAATTCTGCACAATCATTACCTTCACTTCTCAAGACAACGTCAAAGATCTCTT  120

Query  235  GTAGGAGAACAGAAAATGAGACAGAGCCACGGAAAAACAAGTGTTCTTTTGTCTTGGGGG  294
            ||| |||||||||| ||||||||||||||||||| |||||||||||| ||||||| || |
Sbjct  121  GTAAGAGAACAGAAGATGAGACAGAGCCACGGAAGAACAAGTGTTCTCTTGTCTTTGGCG  180

Query  295  TGGCGGCAACTGTCGTAATCGGCGGGATTCAGATCAATGATGTTGCATCAGTGGAAGCTG  354
            ||||||| |||||  |||||||||  ||||||||||||||||| ||||||||||| || |
Sbjct  181  TGGCGGCGACTGTAATAATCGGCGCAATTCAGATCAATGATGTGGCATCAGTGGACGCGG  240

Query  355  CGGTTGTGAAATCGCCGGTAGAAGAGATGGCTGCGGGTGTGGTGCCGCCGCGGAGGTGGA  414
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct  241  CGGTTGTGAAATCGCCGGTAGAAGAGATGGCGGCGGGTGTGGTGCCGCCGCGGCGGTGGA  300

Query  415  GTGACAAGAGGACGTGTCCGCCTTGGCTTGAGAACTCGCTAGAGACCATCGTACCGGAGA  474
            |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct  301  GTGACAAGAGGACGTGTCCGCCTTGGCTTGGGAACTCGCTAGAGACTATCGTACCGGAGA  360

Query  475  ATCTTCCTCGTCCGTCTGCTCATCGACGTTTGGAGTTAGCCGGATTAGCTAAGGGTGATG  534
            ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  ATCTTCCCCGTCCGTCGGCTCATCGACGTTTGGAGTTAGCCGGATTAGCTAAGGGTGATG  420

Query  535  CACCGCCGGTCGGTGTGGTGATGACACGTGTCAACAGGGGTGGTTGTTTCTCCGTGTAAA  594
            |||| ||||| |||| |||| ||||||||||||| |||| |||||| |||||||||||| 
Sbjct  421  CACCACCGGTTGGTGCGGTGGTGACACGTGTCAATAGGGCTGGTTGCTTCTCCGTGTAAT  480

Query  595  TTGGAAGTTCATTACGTGT  613
            |||||||||||||||||||
Sbjct  481  TTGGAAGTTCATTACGTGT  499



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28859048169


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5