BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25630.1
Length=1470
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494520 jgi|Araly1|494520|fgenesh2_kg.8__336__AT5G44640.1 1410 0.0
Ahg481414 jgi|Araly1|481414|fgenesh2_kg.4__474__AT2G25630.1 1384 0.0
Ahg935380 jgi|Araly1|935380|scaffold_403368.1 1291 0.0
> Ahg494520 jgi|Araly1|494520|fgenesh2_kg.8__336__AT5G44640.1
Length=1705
Score = 1410 bits (763), Expect = 0.0
Identities = 982/1089 (90%), Gaps = 10/1089 (1%)
Strand=Plus/Plus
Query 40 TTGGCTTCCAATGAAGTTGTTGCCAAGAGACACTCTTCAACACCTAAATTAAGAAAAACT 99
|||||||||||||||||| ||||||||| ||||||||||||||||||| |||||| || |
Sbjct 43 TTGGCTTCCAATGAAGTTATTGCCAAGAAACACTCTTCAACACCTAAACTAAGAAGAAGT 102
Query 100 GATTTCCCAGAAGA-TTTCATTTTCGGAGCTGCAACCTCTGCGTACCAAGTTGAAGGAGC 158
||||||||| |||| |||| |||| ||||||||||| ||||| |||||||| ||||||||
Sbjct 103 GATTTCCCAAAAGATTTTC-TTTTTGGAGCTGCAACATCTGCTTACCAAGTCGAAGGAGC 161
Query 159 TGCTCAGGAAGATGGTAGAGGACCTAGTATATGGGATACGTTTTCTGAAAAATACCCAGA 218
|||||| ||||||||||||||||| ||||| |||||||| || ||||||||||| || ||
Sbjct 162 TGCTCATGAAGATGGTAGAGGACCAAGTATTTGGGATACATTCTCTGAAAAATATCCGGA 221
Query 219 AAAGATAAAAGATGGTAGCAACGGATCTATTGC-AGATGACTCTTACCATCTTTACAAGG 277
||||||||||||||||||||| ||||||||||| || ||| ||||||||||||||||| |
Sbjct 222 AAAGATAAAAGATGGTAGCAATGGATCTATTGCAAG-TGATTCTTACCATCTTTACAAAG 280
Query 278 AGGATGTGGGTTTATTGCATCAAATTGGGTTCAATGCCTATAGATTCTCCATCTCGTGGT 337
| |||||||||||| | ||||||||||| || ||||||||||||||||||||||||||
Sbjct 281 AAGATGTGGGTTTACTACATCAAATTGGTTTTGGTGCCTATAGATTCTCCATCTCGTGGT 340
Query 338 CGCGTATTTTGCCTCGTGGGAATCTTAAAGGAGGAATCAACCAAGCTGGTATTGACTATT 397
|| | |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 341 CGAGGATTTTGCCACGTGGGAATCTAAAAGGAGGAATCAACCAAGCTGGTATTGACTATT 400
Query 398 ACAACAACTTGATCAATGAGCTTTTGTCTAAAGGAATTAAGCCTTTCGCAACCATTTTCC 457
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 401 ACAACAACTTGATCAATGAGCTTTTGTCTAAAGGAATTAAGCCTTTCGCCACCATTTTCC 460
Query 458 ATTGGGACACACCACAAGACCTTGAAGATGCTTACGGAGGATTCCGTGGGGCAGAAATTG 517
||||||||||||||||||| |||||||||||||||||||||| | ||| || || ||||
Sbjct 461 ATTGGGACACACCACAAGATATTGAAGATGCTTACGGAGGATTTCTTGGTGCGGAGATTG 520
Query 518 TTAATGATTTTCGCGACTATGCCGATATTTGTTTCAAGAGCTTTGGAGATCGAGTGAAAC 577
| |||||||| || || ||||| |||||||||||||||| |||||||||||||| || |
Sbjct 521 TGAATGATTTCCGTGATTATGCGGATATTTGTTTCAAGAATTTTGGAGATCGAGTTAAGC 580
Query 578 ATTGGATTACATTGAACGAGCCATTAACAGTGGTGCAACAAGGATATGTTGCAGGTGTTA 637
||||||| ||||| |||||||||||||| ||||||||||||||||||||||| ||||| |
Sbjct 581 ATTGGATGACATTAAACGAGCCATTAACTGTGGTGCAACAAGGATATGTTGCTGGTGTAA 640
Query 638 TGGCTCCAGGAAGGTGTTCAAAATTTACAAACCCTAACTGCACCGCCGGGA-ATGGAGCC 696
|||||||||||||||| |||||||| ||||| ||||| ||||| || |||| |||||||
Sbjct 641 TGGCTCCAGGAAGGTGCTCAAAATTCACAAATCCTAATTGCACTGC-GGGAGATGGAGCT 699
Query 697 ACCGAGCCTTATATCGTTGGTCACAACCTTATCCTAGCTCACGGAGAAGCAATCAAAGTC 756
|| ||||||||||| |||||||||||||| ||||| || ||||||||||| ||| ||
Sbjct 700 ACAGAGCCTTATATTGTTGGTCACAACCTAATCCTTGCACACGGAGAAGCGGTCAGGGTA 759
Query 757 TATAGA-AAAAAGTATAAGGCTTCTCAAAAAGGTCAAGTCGGTATAGCTTTGAATGCAGG 815
|| ||| ||||| ||||| || |||||||| |||||||| ||||| |||||||| || ||
Sbjct 760 TACAGAGAAAAA-TATAAAGCATCTCAAAATGGTCAAGTTGGTATCGCTTTGAACGCGGG 818
Query 816 TTGGAACTTACCTTATACAGAATCAGCTGAGGATAGGTTAGCCGCGGCACGAGCCATGGC 875
||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||
Sbjct 819 TTGGAACTTACCTTATACAGAATCAGCCGAAGATAGGTTAGCTGCGGCACGAGCCATGGC 878
Query 876 TTTCACATTCGACTATTTCATGGAGCCGCTCGTGACCGGTAAATACCCGGTTGACATGGT 935
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 879 CTTCACATTCGACTATTTCATGGAGCCGCTTGTGACCGGTAAATACCCGGTTGACATGGT 938
Query 936 TAACAACGTAAAAGGCGGTCGCTTGCCTACATTTACTTCAAAACAATCTAACATGCTTAA 995
|| |||||||||||||||||||| |||||||||||| | ||||||||||| ||||| ||
Sbjct 939 CAATAACGTAAAAGGCGGTCGCTTACCTACATTTACTGCTAAACAATCTAAAATGCTAAA 998
Query 996 GGGATCATATGATTTCATTGGCATCAATTATTACTCGTCTTCTTATGCAAAAGATGTTCC 1055
|||||||||||||||||||||||||||||||||||| || ||||| || || ||||||||
Sbjct 999 GGGATCATATGATTTCATTGGCATCAATTATTACTCATCGTCTTACGCTAAGGATGTTCC 1058
Query 1056 TTGCTCAAGCGAAAACGTTACA-ATGTTCTCTGATCCTTGTGCTAGCGTCACAGGCGAAA 1114
|||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||
Sbjct 1059 TTGCTCAAGCGAAAACGTTACACAA-TTCTCTGATCCTTGTGCTAGCGTCACAGGTGAAA 1117
Query 1115 GAGATGGAG 1123
|||| ||||
Sbjct 1118 GAGAAGGAG 1126
> Ahg481414 jgi|Araly1|481414|fgenesh2_kg.4__474__AT2G25630.1
Length=1356
Score = 1384 bits (749), Expect = 0.0
Identities = 946/1036 (91%), Gaps = 33/1036 (3%)
Strand=Plus/Plus
Query 438 GCCTTTCGCAACCATTTTCCATTGGGACACACCACAAGACCTTGAAGATGCTTACGGAGG 497
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 GCCTTTCGCCACCATTTTCCATTGGGACACACCACAAGACCTTGAAGATGCTTACGGAGG 410
Query 498 ATTCCGTGGGGCAGAAATTGTTAATGATTTTCGCGACTATGCCGATATTTGTTTCAAGAG 557
|||||||||||| |||||||| |||||||| ||||| ||||| ||||||||||||||||
Sbjct 411 ATTCCGTGGGGCTGAAATTGTGAATGATTTCCGCGATTATGCGGATATTTGTTTCAAGAA 470
Query 558 CTTTGGAGATCGAGTGAAACATTGGATTACATTGAACGAGCCATTAACAGTGGTGCAACA 617
||||| |||||||||||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct 471 TTTTGGCGATCGAGTGAAACATTGGATGACATTGAACGAACCATTAACTGTGGTGCAACA 530
Query 618 AGGATATGTTGCAGGTGTTATGGCTCCAGGAAGGTGTTCAAAATTTACAAACCCTAACTG 677
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 531 AGGATATGTTGCTGGTGTTATGGCTCCAGAAAGGTGTTCAAAATTTACAAACCCTAATTG 590
Query 678 CACCGCCGGGAATGGAGCCACCGAGCCTTATATCGTTGGTCACAACCTTATCCTAGCTCA 737
|||| |||| |||||||||||||||||||||||||||||||||||||| || || |||||
Sbjct 591 CACCTCCGGAAATGGAGCCACCGAGCCTTATATCGTTGGTCACAACCTCATTCTTGCTCA 650
Query 738 CGGAGAAGCAATCAAAGTCTATAGAAAAAAGTATAAGGCTTCTCAAAAAGGTCAAGTCGG 797
|||||||||| ||||||||||||| |||| | || | | |||| | | ||
Sbjct 651 CGGAGAAGCAGTCAAAGTCTATAG--AAAA--A-AA------T--ATAAGG-CTACTC-- 694
Query 798 TATAGCTTTGAATGCAGGTTGGAACTTACCTTATACAGAATCAGCTGAGGATAGGTTAGC 857
| | || |||||||||||||||||||||||||||| || |||||||||||||
Sbjct 695 -A-A------AA---AGGTTGGAACTTACCTTATACAGAATCATCTAAGGATAGGTTAGC 743
Query 858 CGCGGCACGAGCCATGGCTTTCACATTCGACTATTTCATGGAGCCGCTCGTGACCGGTAA 917
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 744 CGCGGCACGAGCCATGGCTTTCACATTCGACTATTTTATGGAGCCGCTCGTGACCGGTAA 803
Query 918 ATACCCGGTTGACATGGTTAACAACGTAAAAGGCGGTCGCTTGCCTACATTTACTTCAAA 977
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 804 ATACCCGGTTGACATGGTTAACAACGTAAAAGGCGGTCGCTTACCTACATTTACTACAAA 863
Query 978 ACAATCTAACATGCTTAAGGGATCATATGATTTCATTGGCATCAATTATTACTCGTCTTC 1037
||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 864 ACAATCTAAGATGCTTAAGGGATCATATGATTTCATTGGAATAAATTATTACTCGTCTTC 923
Query 1038 TTATGCAAAAGATGTTCCTTGCTCAAGCGAAAACGTTACAATGTTCTCTGATCCTTGTGC 1097
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 924 TTATGCAAAAGATGTTCCTTGCTCAAGCGAAAACGTTACAATGTTCTCTGATCCTTGTTC 983
Query 1098 TAGCGTCACAGGCGAAAGAGATGGAGGAATTCGTGATCTTATCCTCTATGCAAAATACAA 1157
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 984 TAGCGTCACAGGGGAAAGAGAAGGAGGAATTCGTGATCTTATCCTCTATGCAAAATACAA 1043
Query 1158 GTTCAAAGACCCTGTCATGTACATAACAGAAAATGGGAGAGATGAAGCTAGCACTGGTAA 1217
|||||| || ||||||||||||||||| || || ||||||||||||||||| || |||||
Sbjct 1044 GTTCAAGGATCCTGTCATGTACATAACCGAGAACGGGAGAGATGAAGCTAGTACCGGTAA 1103
Query 1218 AATCTTAC-TTAAAGATGGCGATAGAATCGATTACTACGCTCGACATCTCAAGATGGTTC 1276
|||| || |||||||| | || || ||||||||||||||||||||||||||||||||||
Sbjct 1104 AATCG-ACCTTAAAGATAGTGAGAGGATCGATTACTACGCTCGACATCTCAAGATGGTTC 1162
Query 1277 AAGACGCTATCTTGATTGGAGCAAACGTTAAGGGCTTTTTTGCATGGTCGTTGCTAGATA 1336
|||||||||||| ||||||||| ||||| || || |||||||||||||| ||||||||||
Sbjct 1163 AAGACGCTATCTCGATTGGAGCCAACGTAAAAGGATTTTTTGCATGGTCTTTGCTAGATA 1222
Query 1337 ACTTTGAATGGGCATCGGGGTACACGGT-CAGGTTTGGACTTGTTTACGTGGATTTCAAC 1395
||||||||||||||||||| |||||||| | | |||||||||||||||||||||||||||
Sbjct 1223 ACTTTGAATGGGCATCGGGATACACGGTGC-GATTTGGACTTGTTTACGTGGATTTCAAC 1281
Query 1396 GATAGACGTAAGAGATATCTTAAGAAATCGGCTCACTGGTTCAGACATTTATTGAATGGA 1455
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1282 GATGGACGTAAGAGATATCTTAAGAAATCGGCTCACTGGTTCAGACATTTATTGAATGGA 1341
Query 1456 AA-AAAGGAGAATTGA 1470
|| ||| ||||||||
Sbjct 1342 AAGAAAA-AGAATTGA 1356
Score = 446 bits (241), Expect = 3e-124
Identities = 272/287 (95%), Gaps = 2/287 (1%)
Strand=Plus/Plus
Query 1 ATGACAAGTAAATATTTCTCCGTACTAGTGTTCATCATCTTGGCTTCCAATGAAGTTGTT 60
||||||| ||||||||| | ||||||||||||| |||||||||||||||||||||||
Sbjct 1 ATGACAAATAAATATTTTTGTTTACTAGTGTTCATTGTCTTGGCTTCCAATGAAGTTGTT 60
Query 61 GCCAAGAGACACTCTTCAACACCTAAATTAAGAAAA-ACTGATTTCCCAGAAGATTTCAT 119
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 61 GCCAAGAGACACTCTTCAACACCTAAATTAAGAAAATA-TGATTTCCCAGAAGATTTCAT 119
Query 120 TTTCGGAGCTGCAACCTCTGCGTACCAAGTTGAAGGAGCTGCTCAGGAAGATGGTAGAGG 179
||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||
Sbjct 120 TTTCGGAGCTGCAACCTCTGCGTACCAGGTCGAAGGAGCTGCTCATGAAGATGGTAGAGG 179
Query 180 ACCTAGTATATGGGATACGTTTTCTGAAAAATACCCAGAAAAGATAAAAGATGGTAGCAA 239
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 180 ACCTAGTATATGGGATACGTTCTCTGAAAAATACCCACAAAAGATAAAAGATGGTAGCAA 239
Query 240 CGGATCTATTGCAGATGACTCTTACCATCTTTACAAGGAGGATGTGG 286
||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 240 CGGATCTATTGCAGATGACTCTTACCATCTTTACAAGGAAGATGTGG 286
> Ahg935380 jgi|Araly1|935380|scaffold_403368.1
Length=1566
Score = 1291 bits (699), Expect = 0.0
Identities = 971/1104 (88%), Gaps = 12/1104 (1%)
Strand=Plus/Plus
Query 26 TAGTGTTCATCATCTTGGCTTCCAATGAAGTTGTTGCCAAGAGAC-ACTCTTCAACACCT 84
||||| |||| ||||||| ||||| |||||| ||||||| | || ||||||||||||||
Sbjct 50 TAGTGCTCATTGTCTTGGCCTCCAACGAAGTTCTTGCCAACA-ACAACTCTTCAACACCT 108
Query 85 AAATTAAGAAAAACTGATTTCCCAGAAGATTTCATTTTCGGAG-CTGCAACCTCTGCGTA 143
|||||| ||| || |||||| || |||||||||||||| || | ||||||||||||| ||
Sbjct 109 AAATTACGAAGAAGTGATTTTCCTGAAGATTTCATTTTTGG-GTCTGCAACCTCTGCTTA 167
Query 144 CCAAGTTGAAGGAGCTGCTCAGGAAGATGGTAGAGGACCTAGTATATGGGATACGTTTTC 203
||| || |||||||||||||| ||||||||||||||||| ||||| |||||||| || ||
Sbjct 168 CCAGGTCGAAGGAGCTGCTCATGAAGATGGTAGAGGACCAAGTATCTGGGATACCTTCTC 227
Query 204 TGAAAAATACCCAGAAAAGATAAAAGATGGTAGCAACGGATCTATTGCAGATGACTCTTA 263
||| ||||||||||| |||||||| ||||||||||| || ||| |||||||| |||||||
Sbjct 228 TGAGAAATACCCAGAGAAGATAAAGGATGGTAGCAATGGGTCTGTTGCAGATAACTCTTA 287
Query 264 CCATCTTTACAAGGAGGATGTGGGTTTATTGCATCAAATTGGGTTCAATGCCTATAGATT 323
||||||||||||||| ||||||| ||| |||||||||||||| |||||||| || |||||
Sbjct 288 CCATCTTTACAAGGAAGATGTGGCTTTGTTGCATCAAATTGGATTCAATGCATACAGATT 347
Query 324 CTCCATCTCGTGGTCGCGTATTTTGCCTCGTGGGAATCTTAA-AGGAGGAATCAACCAAG 382
||| ||||| |||||| | || |||||||||||||||| ||| ||||||||||||||| |
Sbjct 348 CTCAATCTCATGGTCGAGGATCTTGCCTCGTGGGAATC-TAAGAGGAGGAATCAACCAGG 406
Query 383 CTGGTATTGACTATTACAACAACTTGATCAATGAGCTTTTGTCTAAAGGAATTAAGCCTT 442
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 407 CTGGTATTGACTATTACAACAACTTGATCAATGCGCTTTTGTCCAAAGGAATTAAGCCTT 466
Query 443 TCGCAACCATTTTCCATTGGGACACACCACAAGACCTTGAAGATGCTTACGGAGGATTCC 502
| |||||||| |||||||||||||||||||||| ||||||||||||||| || |||||||
Sbjct 467 TTGCAACCATGTTCCATTGGGACACACCACAAGCCCTTGAAGATGCTTATGGCGGATTCC 526
Query 503 GTGGGGCAGAAATTGTTAATGATTTTCGCGACTATGCCGATATTTGTTTCAAGAGCTTTG 562
|||| || || ||||| || ||||| || || ||||| |||||||| |||||||| ||||
Sbjct 527 GTGGTGCCGAGATTGTGAACGATTTCCGGGATTATGCGGATATTTGCTTCAAGAGTTTTG 586
Query 563 GAGATCGAGTGAAACATTGGATTACATTGAACGAGCCATTAACAGTGGTGCAACAAGGAT 622
||||| ||||||| |||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 587 GAGATAGAGTGAAGCATTGGATGACATTGAACGAGCCATTGACAGTGGTGCAACAAGGAT 646
Query 623 ATGTTGCAGGTGTTATGGCTCCAGGAAGGTGTTCAAAATTTACAAACCCTAACTGCACCG 682
|||||||||||||||||||||||||||| || || ||||| ||||||||||| |||||||
Sbjct 647 ATGTTGCAGGTGTTATGGCTCCAGGAAGATGCTCCAAATTCACAAACCCTAATTGCACCG 706
Query 683 CCGGGAATGGAGCCACCGAGCCTTATATCGTTGGTCACAACCTTATCCTAGCTCACGGAG 742
|| ||||||||||| ||||||||||| ||||||||||| || ||||| ||||||||||
Sbjct 707 GTGGAAATGGAGCCACTGAGCCTTATATTGTTGGTCACAATCTCATCCTTGCTCACGGAG 766
Query 743 AAGCAATCAAAGTCTATAGA-AAAAAGTATAAGGCTTCTCAAAAAGGTCAAGTCGGTATA 801
|| || ||||||| ||| ||||| || |||||||||||||| |||||||| |||||
Sbjct 767 CCGCCGTCCAAGTCTACAGAGAAAAA-TACAAGGCTTCTCAAAATGGTCAAGTTGGTATT 825
Query 802 GCTTTGAATGCAGGTTGGAACTTACCTTATACAGAATCAGCTGAGGATAGGTTAGCCGCG 861
|||||||| || ||||||||||| || |||||||||||| | |||||||| ||||| |||
Sbjct 826 GCTTTGAACGCGGGTTGGAACTTGCCATATACAGAATCACCAGAGGATAGATTAGCTGCG 885
Query 862 GCACGAGCCATGGCTTTCACATTCGACTA-TTTCATGGAGCCGCTCGTGACCGGTAAATA 920
||||||||||||||||||||||| ||||| ||| ||||||||||| ||||||||||||||
Sbjct 886 GCACGAGCCATGGCTTTCACATTTGACTACTTT-ATGGAGCCGCTTGTGACCGGTAAATA 944
Query 921 CCCGGTTGACATGGTTAACAACGTAAAAGGCGGTCGCTTGCCTACATTTACTTCAAAACA 980
||||||||| ||||| ||||| ||||||||||| ||||| |||| ||| ||| || ||||
Sbjct 945 CCCGGTTGATATGGTCAACAATGTAAAAGGCGGCCGCTTACCTATATTCACTGCACAACA 1004
Query 981 ATCTAACATGCTTAAGGGATCATATGATTTCATTGGCATCAATTATTACTCGTCTTCTTA 1040
|||||| ||||| || || ||||||||||||||||||||||| |||||||| || ||||
Sbjct 1005 ATCTAAGATGCTAAAAGGCTCATATGATTTCATTGGCATCAACTATTACTCCTCCACTTA 1064
Query 1041 TGCAAAAGATGTTCCTTGCTCAAGCGAAA-ACGTTACAATGTTCTCTGATCCTTGTGCTA 1099
|||||| |||||||| ||||| | | ||| | ||||| ||||||||||||||||||||||
Sbjct 1065 TGCAAAGGATGTTCCCTGCTCCACC-AAAGATGTTACTATGTTCTCTGATCCTTGTGCTA 1123
Query 1100 GCGTCACAGGCGAAAGAGATGGAG 1123
| |||||||| |||||||| ||||
Sbjct 1124 GTGTCACAGGTGAAAGAGACGGAG 1147
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55002313780
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5