BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G25640.1 Length=2421 Score E Sequences producing significant alignments: (Bits) Value Ahg481416 jgi|Araly1|481416|fgenesh2_kg.4__476__AT2G25640.1 1989 0.0 Ahg489410 jgi|Araly1|489410|fgenesh2_kg.6__2544__AT5G25520.2 233 4e-60 > Ahg481416 jgi|Araly1|481416|fgenesh2_kg.4__476__AT2G25640.1 Length=2241 Score = 1989 bits (1077), Expect = 0.0 Identities = 1320/1435 (92%), Gaps = 25/1435 (2%) Strand=Plus/Plus Query 242 TCATATCTCTGGTGGGAGACAAGATTTTCATGTAATGTTGCCTAGTGTTGTTGGTTTAGG 301 ||| |||||||||||||| || |||||||||||||||||||||| || |||||||||||| Sbjct 213 TCAGATCTCTGGTGGGAGGCAGGATTTTCATGTAATGTTGCCTACTGCTGTTGGTTTAGG 272 Query 302 ATCAGTTAATATGGATA-AGACTCTGTTACCTGGTAAGCGGAAATCTCCGTTGCATCCTT 360 ||||||||||||||||| | | ||||||||| ||||||||||||||||||||||| | | Sbjct 273 ATCAGTTAATATGGATACA-AATCTGTTACCCGGTAAGCGGAAATCTCCGTTGCAGCAAT 331 Query 361 CTGTGCAAAATAAACGGATGGCATTACCTATGGAAGGTCGACCGTGGGCGTCTGCTCCAA 420 |||||| |||||||||||||| | ||||||||||| | |||| |||| ||||||||||| Sbjct 332 CTGTGCCAAATAAACGGATGGTACTACCTATGGAACATAGACCATGGGTGTCTGCTCCAA 391 Query 421 TGCCTGTGCAGTTATCTTCTGTTTCCCCTAGAACACAGTATTTGCCTGCTTCGTTTGTTA 480 ||| ||||||||||||||||||||||| |||||||||||||||||||| || ||||||| Sbjct 392 TGCAGGTGCAGTTATCTTCTGTTTCCCCCAGAACACAGTATTTGCCTGCATCATTTGTTA 451 Query 481 GTAAGAATAGTTTTGTTTCTTTTAGTAAACCTGGGAAGCAAGCTGCGGCGAGAAAACCGA 540 |||||||||||| |||||||| || |||||| || |||||| ||||||||||||||| || Sbjct 452 GTAAGAATAGTTCTGTTTCTTGTAATAAACCCGGTAAGCAAACTGCGGCGAGAAAACAGA 511 Query 541 CTTTACAGAAACCGATGTTGCTGAAACCTCAAAGTGAGTCGTCTGGTTCTGTGAGGTCTA 600 ||| |||||||||||||||||||||||||| ||||| || ||||| ||||| |||| || Sbjct 512 CTTCGCAGAAACCGATGTTGCTGAAACCTCAGAGTGAATCATCTGGATCTGTTAGGTTTA 571 Query 601 AAATGAGAGAATCTTTAGCTGGTGCATTGGCAATGGTACAGTGTCAAATGGATGTTCCTA 660 |||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||| Sbjct 572 AAATGAGAGAATCTTTAGCTGGTGCATTGGCAATGGTACAGTGTGATATGGAAGTTCCTA 631 Query 661 ACGAGTCGAAAATGTTAGATAGTGAGACTGTAGCTAATCCTCTAGAAGGTCATGTTAGTG 720 | |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 632 AAGAGTCGAAAAGGTTAGATAGTGAGACTGTAGCTAATCCTCTCGAAGGTCATGTTAGTG 691 Query 721 GGCCAGTGTCAGCTGCTTCTGGAGTTGATGTGATGGTATCTAATGGAAGTACTGAGATGC 780 ||||||||||||||||||||||||||||||||||||||||||||| || || ||||| | Sbjct 692 AGCCAGTGTCAGCTGCTTCTGGAGTTGATGTGATGGTATCTAATGGGAGCACAGAGATTC 751 Query 781 TGACCCTCAGTGATCCTAGTCCTGTT-GCGGGTATCTCTGTTCAGACAGTGTTACCGGAG 839 |||||||||||||||||||| || || | ||| ||||||||||||| |||||||||||| Sbjct 752 TGACCCTCAGTGATCCTAGTACT-TTAGAAGGTGTCTCTGTTCAGACTGTGTTACCGGAG 810 Query 840 ATTTTGTCTATCGCCAAGACAAGTGATGCCCAAG-------T--------ACCTGAGGCT 884 |||||| ||||| ||||||||| ||||||||||| | |||||||||| Sbjct 811 ATTTTGACTATCACCAAGACAACTGATGCCCAAGAAATTATTGCACAAGAACCTGAGGCT 870 Query 885 GTAAAACCGTTTGTGCAAGACAATGTTTCATATAGTGACAATGTGTTTTCAAAAGATGAT 944 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 871 TTAAAACCGTTTGTGCAAGACAATGTTTCATATAGTGACAATGTGTTTTCAAAAGATGAT 930 Query 945 CTTTTGCAAGGGAATGACCTCTCTTGGGCTCTCGAGTCGGACATTGAGTTTACTGTCAAT 1004 |||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||| Sbjct 931 CTTTTGCAAGGGAATGACCTCTCTTGGGCTCTTGAGTCGGATATTGATTTTACTGTCAAT 990 Query 1005 TGTCAAAATGAAATGATTGGTGCAATGGCTAATGATGGGAGCCTGGAAAAATTGTTACTG 1064 ||||||||||| |||||||| |||||||||||||||||||| | ||| ||||||||| || Sbjct 991 TGTCAAAATGATATGATTGGAGCAATGGCTAATGATGGGAGTCAGGAGAAATTGTTAATG 1050 Query 1065 GATCCACAAGTTTTGGCATTTGAAATAGAGACAGAACTCTTTAAGTTATTTGGTGGTGTA 1124 |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| Sbjct 1051 GATCCACAAGTTTTGGCATTTGAAATAGAGGCAGAACTGTTTAAGTTATTTGGTGGTGTG 1110 Query 1125 AATAAGAAATATAAAGAGAAAGGAAGGTCTCTCTTGTTCAATTTGAAAGACAAGAGTAAT 1184 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1111 AATAAGAAATATAAAGAGAAAGGAAGGTCTCTCTTGTTCAATTTGAAAGACAAGAGTAAT 1170 Query 1185 CCTAAACTCAGGGAAAAAGTTATGTATGGAGAAATTGCAGCAGAGCGATTGTGTTCCATG 1244 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1171 CCTAAACTCAGGGAAAAGGTTATGTATGGAGAAATTGCAGCAGAGCGATTGTGTTCCATG 1230 Query 1245 TCAGCAGAGGAACTTGCTTCAAAGGAACTAGCTGAGTGGCGACAAGCAAAAGCAGAAGAG 1304 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1231 TCAGCAGAAGAACTTGCTTCAAAGGAACTAGCTGAGTGGCGACAAGCAAAAGCAGAAGAG 1290 Query 1305 ATGGCTCAGATGGTTGTTCTGCAGGACACTGAGGTGGATATCAGAAGCCTAGTAAGGAAA 1364 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1291 ATGGCTCAGATGGTTGTTCTGCAGGACACAGAGGTGGATATCAGAAGCCTAGTAAGGAAA 1350 Query 1365 ACACACAAAGGAGAGTTCCAAGTGGAAGTTGAACCAATGGATAGTGGTTCTGTAGAGGTC 1424 ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 1351 ACACACAAAGGAGAGTTCCAAGTGGAAGTTGAACCAATGGATAGTGGCTCAGTAGAGGTC 1410 Query 1425 TCTGTTGGAATGAGTTCGATTAACTGGTCTCGAACAAAGAATTTTAAGAAGAAAACCCCT 1484 |||||||||||||||||| |||| ||||||||| |||||||| | ||||||||||||||| Sbjct 1411 TCTGTTGGAATGAGTTCGCTTAATTGGTCTCGACCAAAGAATATCAAGAAGAAAACCCCT 1470 Query 1485 TCCATCACGAAAACTCTTGGAGTCAAGAATGAATTGAACAG-CTCTAATGAGAGC-ACTG 1542 ||||| || ||||| |||||| ||||||| |||||||| | |||| ||||| || | || Sbjct 1471 TCCATTACTAAAACACTTGGAATCAAGAAGGAATTGAAT-GTCTCTGATGAGGGCGA-TG 1528 Query 1543 G-GCCAATAAACGGAGTCACAATAGATGATGAGATGCAGGCTGCCACTGGATCTCTTCCT 1601 | || |||||| ||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1529 GCGC-AATAAATGGAGTCACAATAGATGATGAGATGCAGGCTGCCACTGTATCTCTTCCT 1587 Query 1602 CCAATTGTCTCTCTTGATGAATTCATGTCATCCATAGATTCTGAATCTCCGTCTG 1656 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1588 CCAATTGTCTCTCTTGATGAATTCATGTCATCCATAGATTCTGAATCTCCGTCTG 1642 Score = 769 bits (416), Expect = 0.0 Identities = 490/526 (93%), Gaps = 4/526 (1%) Strand=Plus/Plus Query 1813 CATCACCTGTTAACGCTGAGGATGCTGACATAGTATCGTCAAAGCCTAG-TTCTGATTTG 1871 ||||||| ||||| |||||||||| |||||||||||||| ||||||| | |||||||||| Sbjct 1718 CATCACCAGTTAAGGCTGAGGATGGTGACATAGTATCGTTAAAGCCT-GATTCTGATTTG 1776 Query 1872 AAATCCAAAACTACATCTGTTTTCATACCTGATGGTGAACGTTTATGGGAAGGTGTGCTC 1931 ||||| ||| || ||||| ||||||||||||||||||||| |||||||||||| |||| Sbjct 1777 AAATCTGAAATTATATCTGGTTTCATACCTGATGGTGAACGCGTATGGGAAGGTGCGCTC 1836 Query 1932 CAGCTGAGTCCTTCTACTGTGAGCTCTGTCATCGGCATTCTAAGAAGTGGCGAAAAGACT 1991 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1837 CAGCTGAGTGCTTCTACTGTGAGCTCTGTCATCGGCATTCTAAGAAGTGGCGAAAAGACT 1896 Query 1992 ACTACAAAAGAGTGGCCTATTTTGCTCGAGATTAAGGGTAGAGTCAGATTAGATGCATTT 2051 ||||| |||||||||||||| ||||| ||||| ||||||||||||||||||||||||||| Sbjct 1897 ACTACTAAAGAGTGGCCTATGTTGCTTGAGATCAAGGGTAGAGTCAGATTAGATGCATTT 1956 Query 2052 GAGAAGTTTGTTCGAGAGCTCCCAAATTCCAGGAGTCGTGCTGTAATGGTTATGTGTTTC 2111 ||||| ||||||||||||||||||||||||||||| |||||||| ||||||||| |||| Sbjct 1957 GAGAAATTTGTTCGAGAGCTCCCAAATTCCAGGAGCCGTGCTGTTATGGTTATGACTTTC 2016 Query 2112 GTCTGCAAAGAAGAGTGCTCAAAGACAGAACAAGAGAACATTTCCGAGGTGGTGGATTCA 2171 ||||| | ||||||||||||||||||||| ||||||| ||||||||||||||||||||| Sbjct 2017 GTCTGTAGAGAAGAGTGCTCAAAGACAGACCAAGAGATCATTTCCGAGGTGGTGGATTCG 2076 Query 2172 TACGCTAAAGATGGGAGGGTGGGTTATGCAGAACCAGCTTCAGGAGTTGAGCTATACCTA 2231 ||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 2077 TACGCTAAAGATGAGAGGGTGGGTTACGCAGAACCGGCTTCAGGAGTTGAGCTATACCTA 2136 Query 2232 TGCCCAACCCGTGGGAGAACTGTC-GAGATTCTAAACAAGATTGTTCCGAGAAACCAACT 2290 |||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||| Sbjct 2137 TGCCCAACCCGTGGGAGAACCG-CAGAGATTCTAAACAAGATTGTTCCGAGAAACCAACT 2195 Query 2291 CGATTTCTTGAAATCTATAAATGATGATGGTCTTATAGGTGTTGTT 2336 |||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 2196 CGATTTCTTGAAATCTTTAAATGATGATGGTCTTATAGGTGTTGTT 2241 Score = 209 bits (113), Expect = 6e-53 Identities = 187/220 (85%), Gaps = 16/220 (7%) Strand=Plus/Plus Query 1 AAGTTCCCTTTAGGGTTTTCTTCTTCACTATAGAGACTCATGCTCTTCTCTTCCCAATCG 60 ||||||| ||||||||||||||||||||||| | ||||||| ||||||||| ||||||| Sbjct 1 AAGTTCCATTTAGGGTTTTCTTCTTCACTAT--ACACTCATGGTCTTCTCTTTCCAATCG 58 Query 61 CCGCCTCTGATCTCTCTTCCTCGCTTCTCAGATTAGC-----CTTTGTTTTGTTAGATTG 115 |||||||||||||||||||||||||||||||||||| ||||||||||||| |||| Sbjct 59 CCGCCTCTGATCTCTCTTCCTCGCTTCTCAGATTAGGTAATTCTTTGTTTTGTTACATTG 118 Query 116 ATTTG--T-T-ATGTCCAACAATCTATTGCCTCAGCCTTGTATGCAAATGGGTCAATTCA 171 ||||| | | |||||||||||||| | |||||||| |||| | |||||||||||||||| Sbjct 119 ATTTGCCTGTTATGTCCAACAATCTCTCGCCTCAGCATTGTTTACAAATGGGTCAATTCA 178 Query 172 TTAATGTCC-CTACTCCCACTCCTGAGCTGATTTCTAATC 210 | ||||| | ||| ||||| || |||| |||||||| Sbjct 179 TCAATGTTGAC-ACT---ACTCCAGACCTGACTTCTAATC 214 Score = 137 bits (74), Expect = 3e-31 Identities = 92/100 (92%), Gaps = 3/100 (3%) Strand=Plus/Plus Query 1689 TCTGTTTCAGATAATAATGATGTAGAGGAGGTTTTAG-TT-T-CATCACCCAAAGAAAGT 1745 ||||| |||||||||||||||| ||||| |||||||| || | |||||||||||||||| Sbjct 1639 TCTGTGTCAGATAATAATGATGCAGAGGCGGTTTTAGTTTGTATATCACCCAAAGAAAGT 1698 Query 1746 GCTAATATTGATCTTTGTACATCACCAGTTAAGGCTGAGG 1785 ||||||||||||||| |||||||||||||||||||||||| Sbjct 1699 GCTAATATTGATCTTGGTACATCACCAGTTAAGGCTGAGG 1738 > Ahg489410 jgi|Araly1|489410|fgenesh2_kg.6__2544__AT5G25520.2 Length=3370 Score = 233 bits (126), Expect = 4e-60 Identities = 277/351 (79%), Gaps = 6/351 (2%) Strand=Plus/Plus Query 1064 GGATCCACAAG-TTTTGGCATTTGAAATAGAGACAGAACTCTTTAAGTTATTTGGTGGTG 1122 ||||||| || | ||||||| | |||| ||| ||||| |||||| ||||||| |||| Sbjct 1198 GGATCCA-GAGCTCTTGGCATCTAAAATTGAGTTGGAACTTTTTAAGCTATTTGGAGGTG 1256 Query 1123 TAAATAAGAAATATAAAGAGAAAGGAAGGTCTCTCTTGTTCAATTTGAAAGACAAGAGTA 1182 | || ||||| || |||||||| |||||||||||||| ||||||||||| || |||| | Sbjct 1257 TGAACAAGAAGTACAAAGAGAAGGGAAGGTCTCTCTTATTCAATTTGAAGGATAAGAACA 1316 Query 1183 ATCCTAAACTCAGGGAAAAAGTTATGTATGGAGAA-AT-TGCAGCAGAGCGATTGTGTTC 1240 ||||| | || || |||| || |||| ||| || || | | ||||| |||||||| Sbjct 1317 ATCCTGAGCTAAGAGAAAGTGTCATGTCCGGA-AAGATAT-CTCCAGAGAGATTGTGTAA 1374 Query 1241 CATGTCAGCAGAGGAACTTGCTTCAAAGGAACTAGCTGAGTGGCGACAAGCAAAAGCAGA 1300 ||| |||| |||||||||||||| ||||| || || |||||||||||||||||||||| Sbjct 1375 TATGACAGCTGAGGAACTTGCTTCTAAGGAGCTTTCTCAGTGGCGACAAGCAAAAGCAGA 1434 Query 1301 AGAGATGGCTCAGATGGTTGTTCTGCAGGACACTGAGGTGGATATCAGAAGCCTAGTAAG 1360 ||||||||| |||||||||| |||| ||| | || | ||| |||||| || || || Sbjct 1435 AGAGATGGCGGAGATGGTTGTCCTGCGGGATGCAGACATTGATGTCAGAAATCTGGTGAG 1494 Query 1361 GAAAACACACAAAGGAGAGTTCCAAGTGGAAGTTGAACCAATGGATAGTGG 1411 |||||| || ||||| |||||||| || ||| |||| || | |||||||| Sbjct 1495 GAAAACGCATAAAGGTGAGTTCCAGGTAGAAATTGATCCTGTTGATAGTGG 1545 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 91226136775 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5