BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25640.1
Length=2421
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481416 jgi|Araly1|481416|fgenesh2_kg.4__476__AT2G25640.1 1989 0.0
Ahg489410 jgi|Araly1|489410|fgenesh2_kg.6__2544__AT5G25520.2 233 4e-60
> Ahg481416 jgi|Araly1|481416|fgenesh2_kg.4__476__AT2G25640.1
Length=2241
Score = 1989 bits (1077), Expect = 0.0
Identities = 1320/1435 (92%), Gaps = 25/1435 (2%)
Strand=Plus/Plus
Query 242 TCATATCTCTGGTGGGAGACAAGATTTTCATGTAATGTTGCCTAGTGTTGTTGGTTTAGG 301
||| |||||||||||||| || |||||||||||||||||||||| || ||||||||||||
Sbjct 213 TCAGATCTCTGGTGGGAGGCAGGATTTTCATGTAATGTTGCCTACTGCTGTTGGTTTAGG 272
Query 302 ATCAGTTAATATGGATA-AGACTCTGTTACCTGGTAAGCGGAAATCTCCGTTGCATCCTT 360
||||||||||||||||| | | ||||||||| ||||||||||||||||||||||| | |
Sbjct 273 ATCAGTTAATATGGATACA-AATCTGTTACCCGGTAAGCGGAAATCTCCGTTGCAGCAAT 331
Query 361 CTGTGCAAAATAAACGGATGGCATTACCTATGGAAGGTCGACCGTGGGCGTCTGCTCCAA 420
|||||| |||||||||||||| | ||||||||||| | |||| |||| |||||||||||
Sbjct 332 CTGTGCCAAATAAACGGATGGTACTACCTATGGAACATAGACCATGGGTGTCTGCTCCAA 391
Query 421 TGCCTGTGCAGTTATCTTCTGTTTCCCCTAGAACACAGTATTTGCCTGCTTCGTTTGTTA 480
||| ||||||||||||||||||||||| |||||||||||||||||||| || |||||||
Sbjct 392 TGCAGGTGCAGTTATCTTCTGTTTCCCCCAGAACACAGTATTTGCCTGCATCATTTGTTA 451
Query 481 GTAAGAATAGTTTTGTTTCTTTTAGTAAACCTGGGAAGCAAGCTGCGGCGAGAAAACCGA 540
|||||||||||| |||||||| || |||||| || |||||| ||||||||||||||| ||
Sbjct 452 GTAAGAATAGTTCTGTTTCTTGTAATAAACCCGGTAAGCAAACTGCGGCGAGAAAACAGA 511
Query 541 CTTTACAGAAACCGATGTTGCTGAAACCTCAAAGTGAGTCGTCTGGTTCTGTGAGGTCTA 600
||| |||||||||||||||||||||||||| ||||| || ||||| ||||| |||| ||
Sbjct 512 CTTCGCAGAAACCGATGTTGCTGAAACCTCAGAGTGAATCATCTGGATCTGTTAGGTTTA 571
Query 601 AAATGAGAGAATCTTTAGCTGGTGCATTGGCAATGGTACAGTGTCAAATGGATGTTCCTA 660
|||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||
Sbjct 572 AAATGAGAGAATCTTTAGCTGGTGCATTGGCAATGGTACAGTGTGATATGGAAGTTCCTA 631
Query 661 ACGAGTCGAAAATGTTAGATAGTGAGACTGTAGCTAATCCTCTAGAAGGTCATGTTAGTG 720
| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 632 AAGAGTCGAAAAGGTTAGATAGTGAGACTGTAGCTAATCCTCTCGAAGGTCATGTTAGTG 691
Query 721 GGCCAGTGTCAGCTGCTTCTGGAGTTGATGTGATGGTATCTAATGGAAGTACTGAGATGC 780
||||||||||||||||||||||||||||||||||||||||||||| || || ||||| |
Sbjct 692 AGCCAGTGTCAGCTGCTTCTGGAGTTGATGTGATGGTATCTAATGGGAGCACAGAGATTC 751
Query 781 TGACCCTCAGTGATCCTAGTCCTGTT-GCGGGTATCTCTGTTCAGACAGTGTTACCGGAG 839
|||||||||||||||||||| || || | ||| ||||||||||||| ||||||||||||
Sbjct 752 TGACCCTCAGTGATCCTAGTACT-TTAGAAGGTGTCTCTGTTCAGACTGTGTTACCGGAG 810
Query 840 ATTTTGTCTATCGCCAAGACAAGTGATGCCCAAG-------T--------ACCTGAGGCT 884
|||||| ||||| ||||||||| ||||||||||| | ||||||||||
Sbjct 811 ATTTTGACTATCACCAAGACAACTGATGCCCAAGAAATTATTGCACAAGAACCTGAGGCT 870
Query 885 GTAAAACCGTTTGTGCAAGACAATGTTTCATATAGTGACAATGTGTTTTCAAAAGATGAT 944
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 871 TTAAAACCGTTTGTGCAAGACAATGTTTCATATAGTGACAATGTGTTTTCAAAAGATGAT 930
Query 945 CTTTTGCAAGGGAATGACCTCTCTTGGGCTCTCGAGTCGGACATTGAGTTTACTGTCAAT 1004
|||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||
Sbjct 931 CTTTTGCAAGGGAATGACCTCTCTTGGGCTCTTGAGTCGGATATTGATTTTACTGTCAAT 990
Query 1005 TGTCAAAATGAAATGATTGGTGCAATGGCTAATGATGGGAGCCTGGAAAAATTGTTACTG 1064
||||||||||| |||||||| |||||||||||||||||||| | ||| ||||||||| ||
Sbjct 991 TGTCAAAATGATATGATTGGAGCAATGGCTAATGATGGGAGTCAGGAGAAATTGTTAATG 1050
Query 1065 GATCCACAAGTTTTGGCATTTGAAATAGAGACAGAACTCTTTAAGTTATTTGGTGGTGTA 1124
|||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 1051 GATCCACAAGTTTTGGCATTTGAAATAGAGGCAGAACTGTTTAAGTTATTTGGTGGTGTG 1110
Query 1125 AATAAGAAATATAAAGAGAAAGGAAGGTCTCTCTTGTTCAATTTGAAAGACAAGAGTAAT 1184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 AATAAGAAATATAAAGAGAAAGGAAGGTCTCTCTTGTTCAATTTGAAAGACAAGAGTAAT 1170
Query 1185 CCTAAACTCAGGGAAAAAGTTATGTATGGAGAAATTGCAGCAGAGCGATTGTGTTCCATG 1244
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1171 CCTAAACTCAGGGAAAAGGTTATGTATGGAGAAATTGCAGCAGAGCGATTGTGTTCCATG 1230
Query 1245 TCAGCAGAGGAACTTGCTTCAAAGGAACTAGCTGAGTGGCGACAAGCAAAAGCAGAAGAG 1304
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1231 TCAGCAGAAGAACTTGCTTCAAAGGAACTAGCTGAGTGGCGACAAGCAAAAGCAGAAGAG 1290
Query 1305 ATGGCTCAGATGGTTGTTCTGCAGGACACTGAGGTGGATATCAGAAGCCTAGTAAGGAAA 1364
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1291 ATGGCTCAGATGGTTGTTCTGCAGGACACAGAGGTGGATATCAGAAGCCTAGTAAGGAAA 1350
Query 1365 ACACACAAAGGAGAGTTCCAAGTGGAAGTTGAACCAATGGATAGTGGTTCTGTAGAGGTC 1424
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1351 ACACACAAAGGAGAGTTCCAAGTGGAAGTTGAACCAATGGATAGTGGCTCAGTAGAGGTC 1410
Query 1425 TCTGTTGGAATGAGTTCGATTAACTGGTCTCGAACAAAGAATTTTAAGAAGAAAACCCCT 1484
|||||||||||||||||| |||| ||||||||| |||||||| | |||||||||||||||
Sbjct 1411 TCTGTTGGAATGAGTTCGCTTAATTGGTCTCGACCAAAGAATATCAAGAAGAAAACCCCT 1470
Query 1485 TCCATCACGAAAACTCTTGGAGTCAAGAATGAATTGAACAG-CTCTAATGAGAGC-ACTG 1542
||||| || ||||| |||||| ||||||| |||||||| | |||| ||||| || | ||
Sbjct 1471 TCCATTACTAAAACACTTGGAATCAAGAAGGAATTGAAT-GTCTCTGATGAGGGCGA-TG 1528
Query 1543 G-GCCAATAAACGGAGTCACAATAGATGATGAGATGCAGGCTGCCACTGGATCTCTTCCT 1601
| || |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1529 GCGC-AATAAATGGAGTCACAATAGATGATGAGATGCAGGCTGCCACTGTATCTCTTCCT 1587
Query 1602 CCAATTGTCTCTCTTGATGAATTCATGTCATCCATAGATTCTGAATCTCCGTCTG 1656
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1588 CCAATTGTCTCTCTTGATGAATTCATGTCATCCATAGATTCTGAATCTCCGTCTG 1642
Score = 769 bits (416), Expect = 0.0
Identities = 490/526 (93%), Gaps = 4/526 (1%)
Strand=Plus/Plus
Query 1813 CATCACCTGTTAACGCTGAGGATGCTGACATAGTATCGTCAAAGCCTAG-TTCTGATTTG 1871
||||||| ||||| |||||||||| |||||||||||||| ||||||| | ||||||||||
Sbjct 1718 CATCACCAGTTAAGGCTGAGGATGGTGACATAGTATCGTTAAAGCCT-GATTCTGATTTG 1776
Query 1872 AAATCCAAAACTACATCTGTTTTCATACCTGATGGTGAACGTTTATGGGAAGGTGTGCTC 1931
||||| ||| || ||||| ||||||||||||||||||||| |||||||||||| ||||
Sbjct 1777 AAATCTGAAATTATATCTGGTTTCATACCTGATGGTGAACGCGTATGGGAAGGTGCGCTC 1836
Query 1932 CAGCTGAGTCCTTCTACTGTGAGCTCTGTCATCGGCATTCTAAGAAGTGGCGAAAAGACT 1991
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1837 CAGCTGAGTGCTTCTACTGTGAGCTCTGTCATCGGCATTCTAAGAAGTGGCGAAAAGACT 1896
Query 1992 ACTACAAAAGAGTGGCCTATTTTGCTCGAGATTAAGGGTAGAGTCAGATTAGATGCATTT 2051
||||| |||||||||||||| ||||| ||||| |||||||||||||||||||||||||||
Sbjct 1897 ACTACTAAAGAGTGGCCTATGTTGCTTGAGATCAAGGGTAGAGTCAGATTAGATGCATTT 1956
Query 2052 GAGAAGTTTGTTCGAGAGCTCCCAAATTCCAGGAGTCGTGCTGTAATGGTTATGTGTTTC 2111
||||| ||||||||||||||||||||||||||||| |||||||| ||||||||| ||||
Sbjct 1957 GAGAAATTTGTTCGAGAGCTCCCAAATTCCAGGAGCCGTGCTGTTATGGTTATGACTTTC 2016
Query 2112 GTCTGCAAAGAAGAGTGCTCAAAGACAGAACAAGAGAACATTTCCGAGGTGGTGGATTCA 2171
||||| | ||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 2017 GTCTGTAGAGAAGAGTGCTCAAAGACAGACCAAGAGATCATTTCCGAGGTGGTGGATTCG 2076
Query 2172 TACGCTAAAGATGGGAGGGTGGGTTATGCAGAACCAGCTTCAGGAGTTGAGCTATACCTA 2231
||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 2077 TACGCTAAAGATGAGAGGGTGGGTTACGCAGAACCGGCTTCAGGAGTTGAGCTATACCTA 2136
Query 2232 TGCCCAACCCGTGGGAGAACTGTC-GAGATTCTAAACAAGATTGTTCCGAGAAACCAACT 2290
|||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||
Sbjct 2137 TGCCCAACCCGTGGGAGAACCG-CAGAGATTCTAAACAAGATTGTTCCGAGAAACCAACT 2195
Query 2291 CGATTTCTTGAAATCTATAAATGATGATGGTCTTATAGGTGTTGTT 2336
|||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2196 CGATTTCTTGAAATCTTTAAATGATGATGGTCTTATAGGTGTTGTT 2241
Score = 209 bits (113), Expect = 6e-53
Identities = 187/220 (85%), Gaps = 16/220 (7%)
Strand=Plus/Plus
Query 1 AAGTTCCCTTTAGGGTTTTCTTCTTCACTATAGAGACTCATGCTCTTCTCTTCCCAATCG 60
||||||| ||||||||||||||||||||||| | ||||||| ||||||||| |||||||
Sbjct 1 AAGTTCCATTTAGGGTTTTCTTCTTCACTAT--ACACTCATGGTCTTCTCTTTCCAATCG 58
Query 61 CCGCCTCTGATCTCTCTTCCTCGCTTCTCAGATTAGC-----CTTTGTTTTGTTAGATTG 115
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 59 CCGCCTCTGATCTCTCTTCCTCGCTTCTCAGATTAGGTAATTCTTTGTTTTGTTACATTG 118
Query 116 ATTTG--T-T-ATGTCCAACAATCTATTGCCTCAGCCTTGTATGCAAATGGGTCAATTCA 171
||||| | | |||||||||||||| | |||||||| |||| | ||||||||||||||||
Sbjct 119 ATTTGCCTGTTATGTCCAACAATCTCTCGCCTCAGCATTGTTTACAAATGGGTCAATTCA 178
Query 172 TTAATGTCC-CTACTCCCACTCCTGAGCTGATTTCTAATC 210
| ||||| | ||| ||||| || |||| ||||||||
Sbjct 179 TCAATGTTGAC-ACT---ACTCCAGACCTGACTTCTAATC 214
Score = 137 bits (74), Expect = 3e-31
Identities = 92/100 (92%), Gaps = 3/100 (3%)
Strand=Plus/Plus
Query 1689 TCTGTTTCAGATAATAATGATGTAGAGGAGGTTTTAG-TT-T-CATCACCCAAAGAAAGT 1745
||||| |||||||||||||||| ||||| |||||||| || | ||||||||||||||||
Sbjct 1639 TCTGTGTCAGATAATAATGATGCAGAGGCGGTTTTAGTTTGTATATCACCCAAAGAAAGT 1698
Query 1746 GCTAATATTGATCTTTGTACATCACCAGTTAAGGCTGAGG 1785
||||||||||||||| ||||||||||||||||||||||||
Sbjct 1699 GCTAATATTGATCTTGGTACATCACCAGTTAAGGCTGAGG 1738
> Ahg489410 jgi|Araly1|489410|fgenesh2_kg.6__2544__AT5G25520.2
Length=3370
Score = 233 bits (126), Expect = 4e-60
Identities = 277/351 (79%), Gaps = 6/351 (2%)
Strand=Plus/Plus
Query 1064 GGATCCACAAG-TTTTGGCATTTGAAATAGAGACAGAACTCTTTAAGTTATTTGGTGGTG 1122
||||||| || | ||||||| | |||| ||| ||||| |||||| ||||||| ||||
Sbjct 1198 GGATCCA-GAGCTCTTGGCATCTAAAATTGAGTTGGAACTTTTTAAGCTATTTGGAGGTG 1256
Query 1123 TAAATAAGAAATATAAAGAGAAAGGAAGGTCTCTCTTGTTCAATTTGAAAGACAAGAGTA 1182
| || ||||| || |||||||| |||||||||||||| ||||||||||| || |||| |
Sbjct 1257 TGAACAAGAAGTACAAAGAGAAGGGAAGGTCTCTCTTATTCAATTTGAAGGATAAGAACA 1316
Query 1183 ATCCTAAACTCAGGGAAAAAGTTATGTATGGAGAA-AT-TGCAGCAGAGCGATTGTGTTC 1240
||||| | || || |||| || |||| ||| || || | | ||||| ||||||||
Sbjct 1317 ATCCTGAGCTAAGAGAAAGTGTCATGTCCGGA-AAGATAT-CTCCAGAGAGATTGTGTAA 1374
Query 1241 CATGTCAGCAGAGGAACTTGCTTCAAAGGAACTAGCTGAGTGGCGACAAGCAAAAGCAGA 1300
||| |||| |||||||||||||| ||||| || || ||||||||||||||||||||||
Sbjct 1375 TATGACAGCTGAGGAACTTGCTTCTAAGGAGCTTTCTCAGTGGCGACAAGCAAAAGCAGA 1434
Query 1301 AGAGATGGCTCAGATGGTTGTTCTGCAGGACACTGAGGTGGATATCAGAAGCCTAGTAAG 1360
||||||||| |||||||||| |||| ||| | || | ||| |||||| || || ||
Sbjct 1435 AGAGATGGCGGAGATGGTTGTCCTGCGGGATGCAGACATTGATGTCAGAAATCTGGTGAG 1494
Query 1361 GAAAACACACAAAGGAGAGTTCCAAGTGGAAGTTGAACCAATGGATAGTGG 1411
|||||| || ||||| |||||||| || ||| |||| || | ||||||||
Sbjct 1495 GAAAACGCATAAAGGTGAGTTCCAGGTAGAAATTGATCCTGTTGATAGTGG 1545
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91226136775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5