BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G25650.1 Length=1550 Score E Sequences producing significant alignments: (Bits) Value Ahg900011 jgi|Araly1|900011|Al_scaffold_0004_661 562 3e-159 Ahg893333 jgi|Araly1|893333|Al_scaffold_0006_1329 281 9e-75 > Ahg900011 jgi|Araly1|900011|Al_scaffold_0004_661 Length=888 Score = 562 bits (304), Expect = 3e-159 Identities = 421/474 (89%), Gaps = 21/474 (4%) Strand=Plus/Plus Query 869 GCTCGAGAGCGAGAGCGAGGAGGAGATGTTGAAGGAGCATGAGGAACCCTTTAATGAGAA 928 |||| ||| ||||| | |||||||||||||||||||||||||||| |||| |||||||| Sbjct 421 GCTC-AGAACGAGATTGGGGAGGAGATGTTGAAGGAGCATGAGGAAACCTTGAATGAGAA 479 Query 929 TGGTGCAGAGAATATAAGAGACAATAACGGGACTACTCAAATAGCACAGCAGAGCGAGAG 988 |||||||| ||| |||| |||||| ||||||||||||||||||| || |||||||||||| Sbjct 480 TGGTGCAGCGAAAATAACAGACAACAACGGGACTACTCAAATAGTACCGCAGAGCGAGAG 539 Query 989 CGAGAGTGAGGAGATGTTGAAGGAGCATGAGGAA--G-TGGCTAATACTGAA-CTTGTAA 1044 | ||| |||||||||||||||||||| |||||| | |||||||||||||| | | || Sbjct 540 C--GAG-GAGGAGATGTTGAAGGAGCACGAGGAAGTGCTGGCTAATACTGAACCCT-TAT 595 Query 1045 ATGAGAATGGG-GCAGCGAAAACAACAGAGAACGGGACTACTGGTGGAAAAGAGAGACat 1103 ||||||||||| | ||||||||||| | ||||||||||||||| ||| |||| |||| | Sbjct 596 ATGAGAATGGGAG-AGCGAAAACAAAAAAGAACGGGACTACTGCTGG-AAAG-GAGA-GT 651 Query 1104 gatgacgatgatgatgatgaGTTA-TGCGCTGTGCAGGATGCATTTGAGGCTGTAATGTC 1162 |||||||||||||| | ||| | |||||||||||||||||||||||||||||||| Sbjct 652 CCTGACGATGATGATG--CA-TTACT-TGCTGTGCAGGATGCATTTGAGGCTGTAATGTC 707 Query 1163 GCAAGGTTTAAGTGGTTATCAAAAGAAGTTGCAGCTTGAGAAGCTGATGAACCTTGGAAC 1222 ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| Sbjct 708 ACAAGGTTTAAGTGATTATCAAAAGAAGTTGCAGCTTGAGAAGCTCATGAACCTTGGAAC 767 Query 1223 TGGAAAAAGAAGAGAGTTGAGTGATGAATGGAAAGCGTTATGTGTTGAGGAAAG-AAGAT 1281 ||||||||||||||||||||| |||||||||||||||||||||||||||||| | || || Sbjct 768 TGGAAAAAGAAGAGAGTTGAGCGATGAATGGAAAGCGTTATGTGTTGAGGAACGGAA-AT 826 Query 1282 TGAATATCAAGAAGCTTAGATTTTCCGCCAAGCTTGCAGAGGCAGCTAATGATA 1335 ||||||||||||||||||||||||| ||||||||||||||||| || ||| ||| Sbjct 827 TGAATATCAAGAAGCTTAGATTTTCTGCCAAGCTTGCAGAGGCTGCAAATTATA 880 Score = 475 bits (257), Expect = 4e-133 Identities = 427/501 (85%), Gaps = 44/501 (9%) Strand=Plus/Plus Query 424 TTGATTACAGAGCTAAGACAGGATT-CAATCCCAAAATTGATTGGGATGCGTTTTA-CAG 481 ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| | | Sbjct 104 TTGATTACAGAGCTAAGACAGGATTCCAAT-CCAAAATTGATTGGGATGCGTTTTATC-G 161 Query 482 TTTCCTCGGAAGTTCTATCGTTGCGAAATTCTCCAAGGAGCAGGTTTTGAGTAAGATCAG 541 ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| Sbjct 162 TTTCCTCGGAAGTTCAATCGTTGCGAAATTCTCCAAGGATCAGGTTTTGAGTAAGATCAG 221 Query 542 GAAGTTGAAAAGGAGATTTCATGTTCATTGGGAGAAAATCAGTGAAGGGAATGATCCGAA 601 ||| |||||||||||||||| |||||| ||||||||||||| ||||||||||||||| || Sbjct 222 GAAATTGAAAAGGAGATTTCTTGTTCACTGGGAGAAAATCAATGAAGGGAATGATCCCAA 281 Query 602 ATTTACTAGGTCTAGTGATTCTGAAGCCTTTGGATTTTCTTCGATGATTTGGGGACAA-- 659 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 282 GTTTACTAGGTCTAGTGATTCTGAAGCCTTTGGATTTTCTTCAATGATTTGGGGACAAAA 341 Query 660 -G--G-TGAATTTGGTAATGATGATGGTATGGATAAGGAGATGGTGAAGGAGCACGATGT 715 | | ||||||||||||| |||||||||||||||| ||| | ||||| | Sbjct 342 TGAAGCTGAATTTGGTAATCATGATGGTATGGATAA--AGA-G---------CACGAGG- 388 Query 716 AAACGG-AAATGGCGCAGCTGAAAATGGGACTGCTCGAATAGCACAGGAGAACGAGAGTG 774 || | | |||||| ||||| ||||| |||||||||| | | | | ||||| || Sbjct 389 AACCCGTAAATGGGGCAGCGGAAAACGGGACTGCTC-A---G-A-A------CGAGATTG 436 Query 775 GGGAGGAGATGTTAAAGGAGCATGAGGAAACGTTAAATGAGAATGGTGCAGAGGAGATAA 834 ||||||||||||| ||||||||||||||||| || |||||||||||||||| | | |||| Sbjct 437 GGGAGGAGATGTTGAAGGAGCATGAGGAAACCTTGAATGAGAATGGTGCAGCGAAAATAA 496 Query 835 GAGACAACGACGAGACTGCTCGGAA-AGCACAGCAGCTCGAGAGCGAGAGCGAGGAGGAG 893 ||||||| ||| |||| ||| || || || | || |||||||||||||||||||| Sbjct 497 CAGACAACAACGGGACTACTCA-AATAGTAC--C-GC---AGAGCGAGAGCGAGGAGGAG 549 Query 894 ATGTTGAAGGAGCATGAGGAA 914 |||||||||||||| |||||| Sbjct 550 ATGTTGAAGGAGCACGAGGAA 570 > Ahg893333 jgi|Araly1|893333|Al_scaffold_0006_1329 Length=1662 Score = 281 bits (152), Expect = 9e-75 Identities = 200/223 (90%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 1115 tgatgatgaGTTATGCGCTGTGCAGGATGCATTTGAG---GCTGTAATGTCGCAAGGTTT 1171 |||||||| ||| |||||||||| ||||||||||||| | | ||||||||||||| Sbjct 636 TGATGATGTGTTGTGCGCTGTGCGGGATGCATTTGAGAACACCATGGTGTCGCAAGGTTT 695 Query 1172 AAGTGGTTATCAAAAGAAGTTGCAGCTTGAGAAGCTGATGAACCTTGGAACTGGAAAAAG 1231 ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 696 AAGTGATTATCAAAAGAAGTTGCAGCTTGAGAAGCTGATGAACCTTGGAACTGGTAAAAG 755 Query 1232 AAGAGAGTTGAGTGATGAATGGAAAGCGTTATGTGTTGAGGAAAGAAGATTGAATATCAA 1291 |||||||||||| | ||||||||||| |||||||||||||| || |||||||||||| Sbjct 756 AAGAGAGTTGAGCAACGAATGGAAAGCACTATGTGTTGAGGAATTAAAATTGAATATCAA 815 Query 1292 GAAGCTTAGATTTTCCGCCAAGCTTGCAGAGGCAGCTAATGAT 1334 ||||||| |||||||||||||||||||||||||||| |||||| Sbjct 816 GAAGCTTCGATTTTCCGCCAAGCTTGCAGAGGCAGCAAATGAT 858 Score = 265 bits (143), Expect = 9e-70 Identities = 271/329 (82%), Gaps = 23/329 (7%) Strand=Plus/Plus Query 342 aagaagaagaagaaTTTGGGTCCGCCGTTGATCGT--CCGGATCTGGAACGAGGAAGATG 399 ||||||||||| || |||| | | ||| ||| || ||||||||||||||||||||||| Sbjct 118 AAGAAGAAGAACAAATTGGCTTCTCCGATGA--GTAACCGGATCTGGAACGAGGAAGATG 175 Query 400 AGCTCTCTATCTTAAAGGGATTAGTTG-ATTA-CAGAGCTAAGACAGGATTC-AATCCCA 456 ||||||||||||||||||||||| ||| ||| | ||||||||||||| || ||||| | Sbjct 176 AGCTCTCTATCTTAAAGGGATTA-TTGGATTTTC-GAGCTAAGACAGGGCTCGAATCC-A 232 Query 457 AAATTGATTGGGATGCGTTTTACAGTTTCCTCGGAAGTTCTAT-CGT-TGCGAAATTCTC 514 ||||||||||||| |||||||| ||||| || || |||| || | | ||| || | ||| Sbjct 233 AAATTGATTGGGAAGCGTTTTATGGTTTCGTCAGAGGTTCCATTCATGTGC-AAGT-CTC 290 Query 515 CAAGGAGCAGGTTTTGAGTAAGATCAGGAAGTTGAA-AAGGAGATTTCATGTTCAT-TGG 572 ||||| ||||| |||| ||||| || ||||||||| ||| || || | || |||| ||| Sbjct 291 TAAGGATCAGGTGTTGAATAAGACCAAGAAGTTGAAGAAGAAG-TTCCTTGATCATATGG 349 Query 573 GAGAAAATCAGTGAAGGGAAT-GATCCGAAATTTACTAGGTCTAGTGATTCTGAAGCCTT 631 ||||||||| | |||| ||| |||||| | ||||||||||||| ||| ||||||||||| Sbjct 350 -AGAAAATCAATCAAGG-AATTGATCCGCATTTTACTAGGTCTATTGACTCTGAAGCCTT 407 Query 632 TGGATTTTCT-TCGATGATTTGGGGACAA 659 ||||||||| | |||||||||||| ||| Sbjct 408 TGGATTTTCCAT-GATGATTTGGGG-CAA 434 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58049533380 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5