BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25650.1
Length=1550
Score E
Sequences producing significant alignments: (Bits) Value
Ahg900011 jgi|Araly1|900011|Al_scaffold_0004_661 562 3e-159
Ahg893333 jgi|Araly1|893333|Al_scaffold_0006_1329 281 9e-75
> Ahg900011 jgi|Araly1|900011|Al_scaffold_0004_661
Length=888
Score = 562 bits (304), Expect = 3e-159
Identities = 421/474 (89%), Gaps = 21/474 (4%)
Strand=Plus/Plus
Query 869 GCTCGAGAGCGAGAGCGAGGAGGAGATGTTGAAGGAGCATGAGGAACCCTTTAATGAGAA 928
|||| ||| ||||| | |||||||||||||||||||||||||||| |||| ||||||||
Sbjct 421 GCTC-AGAACGAGATTGGGGAGGAGATGTTGAAGGAGCATGAGGAAACCTTGAATGAGAA 479
Query 929 TGGTGCAGAGAATATAAGAGACAATAACGGGACTACTCAAATAGCACAGCAGAGCGAGAG 988
|||||||| ||| |||| |||||| ||||||||||||||||||| || ||||||||||||
Sbjct 480 TGGTGCAGCGAAAATAACAGACAACAACGGGACTACTCAAATAGTACCGCAGAGCGAGAG 539
Query 989 CGAGAGTGAGGAGATGTTGAAGGAGCATGAGGAA--G-TGGCTAATACTGAA-CTTGTAA 1044
| ||| |||||||||||||||||||| |||||| | |||||||||||||| | | ||
Sbjct 540 C--GAG-GAGGAGATGTTGAAGGAGCACGAGGAAGTGCTGGCTAATACTGAACCCT-TAT 595
Query 1045 ATGAGAATGGG-GCAGCGAAAACAACAGAGAACGGGACTACTGGTGGAAAAGAGAGACat 1103
||||||||||| | ||||||||||| | ||||||||||||||| ||| |||| |||| |
Sbjct 596 ATGAGAATGGGAG-AGCGAAAACAAAAAAGAACGGGACTACTGCTGG-AAAG-GAGA-GT 651
Query 1104 gatgacgatgatgatgatgaGTTA-TGCGCTGTGCAGGATGCATTTGAGGCTGTAATGTC 1162
|||||||||||||| | ||| | ||||||||||||||||||||||||||||||||
Sbjct 652 CCTGACGATGATGATG--CA-TTACT-TGCTGTGCAGGATGCATTTGAGGCTGTAATGTC 707
Query 1163 GCAAGGTTTAAGTGGTTATCAAAAGAAGTTGCAGCTTGAGAAGCTGATGAACCTTGGAAC 1222
||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 708 ACAAGGTTTAAGTGATTATCAAAAGAAGTTGCAGCTTGAGAAGCTCATGAACCTTGGAAC 767
Query 1223 TGGAAAAAGAAGAGAGTTGAGTGATGAATGGAAAGCGTTATGTGTTGAGGAAAG-AAGAT 1281
||||||||||||||||||||| |||||||||||||||||||||||||||||| | || ||
Sbjct 768 TGGAAAAAGAAGAGAGTTGAGCGATGAATGGAAAGCGTTATGTGTTGAGGAACGGAA-AT 826
Query 1282 TGAATATCAAGAAGCTTAGATTTTCCGCCAAGCTTGCAGAGGCAGCTAATGATA 1335
||||||||||||||||||||||||| ||||||||||||||||| || ||| |||
Sbjct 827 TGAATATCAAGAAGCTTAGATTTTCTGCCAAGCTTGCAGAGGCTGCAAATTATA 880
Score = 475 bits (257), Expect = 4e-133
Identities = 427/501 (85%), Gaps = 44/501 (9%)
Strand=Plus/Plus
Query 424 TTGATTACAGAGCTAAGACAGGATT-CAATCCCAAAATTGATTGGGATGCGTTTTA-CAG 481
||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| | |
Sbjct 104 TTGATTACAGAGCTAAGACAGGATTCCAAT-CCAAAATTGATTGGGATGCGTTTTATC-G 161
Query 482 TTTCCTCGGAAGTTCTATCGTTGCGAAATTCTCCAAGGAGCAGGTTTTGAGTAAGATCAG 541
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 162 TTTCCTCGGAAGTTCAATCGTTGCGAAATTCTCCAAGGATCAGGTTTTGAGTAAGATCAG 221
Query 542 GAAGTTGAAAAGGAGATTTCATGTTCATTGGGAGAAAATCAGTGAAGGGAATGATCCGAA 601
||| |||||||||||||||| |||||| ||||||||||||| ||||||||||||||| ||
Sbjct 222 GAAATTGAAAAGGAGATTTCTTGTTCACTGGGAGAAAATCAATGAAGGGAATGATCCCAA 281
Query 602 ATTTACTAGGTCTAGTGATTCTGAAGCCTTTGGATTTTCTTCGATGATTTGGGGACAA-- 659
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 282 GTTTACTAGGTCTAGTGATTCTGAAGCCTTTGGATTTTCTTCAATGATTTGGGGACAAAA 341
Query 660 -G--G-TGAATTTGGTAATGATGATGGTATGGATAAGGAGATGGTGAAGGAGCACGATGT 715
| | ||||||||||||| |||||||||||||||| ||| | ||||| |
Sbjct 342 TGAAGCTGAATTTGGTAATCATGATGGTATGGATAA--AGA-G---------CACGAGG- 388
Query 716 AAACGG-AAATGGCGCAGCTGAAAATGGGACTGCTCGAATAGCACAGGAGAACGAGAGTG 774
|| | | |||||| ||||| ||||| |||||||||| | | | | ||||| ||
Sbjct 389 AACCCGTAAATGGGGCAGCGGAAAACGGGACTGCTC-A---G-A-A------CGAGATTG 436
Query 775 GGGAGGAGATGTTAAAGGAGCATGAGGAAACGTTAAATGAGAATGGTGCAGAGGAGATAA 834
||||||||||||| ||||||||||||||||| || |||||||||||||||| | | ||||
Sbjct 437 GGGAGGAGATGTTGAAGGAGCATGAGGAAACCTTGAATGAGAATGGTGCAGCGAAAATAA 496
Query 835 GAGACAACGACGAGACTGCTCGGAA-AGCACAGCAGCTCGAGAGCGAGAGCGAGGAGGAG 893
||||||| ||| |||| ||| || || || | || ||||||||||||||||||||
Sbjct 497 CAGACAACAACGGGACTACTCA-AATAGTAC--C-GC---AGAGCGAGAGCGAGGAGGAG 549
Query 894 ATGTTGAAGGAGCATGAGGAA 914
|||||||||||||| ||||||
Sbjct 550 ATGTTGAAGGAGCACGAGGAA 570
> Ahg893333 jgi|Araly1|893333|Al_scaffold_0006_1329
Length=1662
Score = 281 bits (152), Expect = 9e-75
Identities = 200/223 (90%), Gaps = 3/223 (1%)
Strand=Plus/Plus
Query 1115 tgatgatgaGTTATGCGCTGTGCAGGATGCATTTGAG---GCTGTAATGTCGCAAGGTTT 1171
|||||||| ||| |||||||||| ||||||||||||| | | |||||||||||||
Sbjct 636 TGATGATGTGTTGTGCGCTGTGCGGGATGCATTTGAGAACACCATGGTGTCGCAAGGTTT 695
Query 1172 AAGTGGTTATCAAAAGAAGTTGCAGCTTGAGAAGCTGATGAACCTTGGAACTGGAAAAAG 1231
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 696 AAGTGATTATCAAAAGAAGTTGCAGCTTGAGAAGCTGATGAACCTTGGAACTGGTAAAAG 755
Query 1232 AAGAGAGTTGAGTGATGAATGGAAAGCGTTATGTGTTGAGGAAAGAAGATTGAATATCAA 1291
|||||||||||| | ||||||||||| |||||||||||||| || ||||||||||||
Sbjct 756 AAGAGAGTTGAGCAACGAATGGAAAGCACTATGTGTTGAGGAATTAAAATTGAATATCAA 815
Query 1292 GAAGCTTAGATTTTCCGCCAAGCTTGCAGAGGCAGCTAATGAT 1334
||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 816 GAAGCTTCGATTTTCCGCCAAGCTTGCAGAGGCAGCAAATGAT 858
Score = 265 bits (143), Expect = 9e-70
Identities = 271/329 (82%), Gaps = 23/329 (7%)
Strand=Plus/Plus
Query 342 aagaagaagaagaaTTTGGGTCCGCCGTTGATCGT--CCGGATCTGGAACGAGGAAGATG 399
||||||||||| || |||| | | ||| ||| || |||||||||||||||||||||||
Sbjct 118 AAGAAGAAGAACAAATTGGCTTCTCCGATGA--GTAACCGGATCTGGAACGAGGAAGATG 175
Query 400 AGCTCTCTATCTTAAAGGGATTAGTTG-ATTA-CAGAGCTAAGACAGGATTC-AATCCCA 456
||||||||||||||||||||||| ||| ||| | ||||||||||||| || ||||| |
Sbjct 176 AGCTCTCTATCTTAAAGGGATTA-TTGGATTTTC-GAGCTAAGACAGGGCTCGAATCC-A 232
Query 457 AAATTGATTGGGATGCGTTTTACAGTTTCCTCGGAAGTTCTAT-CGT-TGCGAAATTCTC 514
||||||||||||| |||||||| ||||| || || |||| || | | ||| || | |||
Sbjct 233 AAATTGATTGGGAAGCGTTTTATGGTTTCGTCAGAGGTTCCATTCATGTGC-AAGT-CTC 290
Query 515 CAAGGAGCAGGTTTTGAGTAAGATCAGGAAGTTGAA-AAGGAGATTTCATGTTCAT-TGG 572
||||| ||||| |||| ||||| || ||||||||| ||| || || | || |||| |||
Sbjct 291 TAAGGATCAGGTGTTGAATAAGACCAAGAAGTTGAAGAAGAAG-TTCCTTGATCATATGG 349
Query 573 GAGAAAATCAGTGAAGGGAAT-GATCCGAAATTTACTAGGTCTAGTGATTCTGAAGCCTT 631
||||||||| | |||| ||| |||||| | ||||||||||||| ||| |||||||||||
Sbjct 350 -AGAAAATCAATCAAGG-AATTGATCCGCATTTTACTAGGTCTATTGACTCTGAAGCCTT 407
Query 632 TGGATTTTCT-TCGATGATTTGGGGACAA 659
||||||||| | |||||||||||| |||
Sbjct 408 TGGATTTTCCAT-GATGATTTGGGG-CAA 434
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58049533380
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5