BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25670.1
Length=1690
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932734 jgi|Araly1|932734|scaffold_400722.1 1642 0.0
Ahg328472 jgi|Araly1|328472|fgenesh1_pm.C_scaffold_7000699 588 5e-167
> Ahg932734 jgi|Araly1|932734|scaffold_400722.1
Length=1068
Score = 1642 bits (889), Expect = 0.0
Identities = 1019/1079 (94%), Gaps = 19/1079 (2%)
Strand=Plus/Plus
Query 317 TAGCTGAATCGT-TGTTAAGATGGCTGGAGGTGGAAACAGGAGAGATGAAGGATCGATCA 375
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TAGCTGAATCGTGTGTTAAGATGGCTGGAGGTGGAAACAGGAGAGATGAAGGATCGATCA 60
Query 376 CGATCCAGAGCACTAATTTGTTTGCAGCATTGGACACTCGTAAGAAGAAGAAGAAGTCTG 435
|||||||||| || |||||||||||||| ||||| ||||||||||||||||||||| |
Sbjct 61 CGATCCAGAGTACCAATTTGTTTGCAGCTTTGGATACTCGTAAGAAGAAGAAGAAG--T- 117
Query 436 ACAAGGCAGGGAAGAGCAAAGGGTCTTCTAAGTCACGAGAGCCAGAGAAGGAGCCTGAGC 495
||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 ------CAGGGAAGAACAAAGGGTCTTCTAAGTCACGAGAGCCAGAGAAGGAGCCTGAGC 171
Query 496 CTCAGGTCTATTGGGCTCCTACGCCTTTGAAAGTTAAGTCTTGGGCTGATATTGATGATG 555
||||||||| |||||| ||||| || ||||||||||||||||||||||||||||||||||
Sbjct 172 CTCAGGTCTTTTGGGCACCTACTCCGTTGAAAGTTAAGTCTTGGGCTGATATTGATGATG 231
Query 556 AAGACGACGATGATGACTATTATGCAACCACTGCTCCTCCTCAGTCTGGTTGGAGTACTT 615
| || || ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 232 ACGATGATGATGATGACTATTATGCAACCACTGCTCCTCCTCAGTCTGGTTGGAGCACTT 291
Query 616 CTCTGCCTTCCCATACTGATTCCAAAGACGTTCATGTTGAGGAAAGTGAAAGTGAGGAAG 675
|| ||||||||||| | ||||| |||||||||||||| |||||||||||||||||||| |
Sbjct 292 CTGTGCCTTCCCATTCGGATTCGAAAGACGTTCATGTCGAGGAAAGTGAAAGTGAGGACG 351
Query 676 ATATTCTTGATGAAGGTGATGATGATGTGGAGGAAGAGCAGGAACAGGAAACAGAGGTAC 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 ATATTCTTGATGAAGGTGATGATGATGTGGAGGAAGAGCAGGAACAGGAAACAGAGGTAC 411
Query 736 AGGTTCATCC--A----GAGCCTGAGGTGAAGAAAGCTCCTGAAGTTCCTGCACCTCCTA 789
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 AGGTTCATCCAGAGCCTGAGCCTGAGGTGAAGAAAGCTCCTGAAGTTCCTGCACCTCCTA 471
Query 790 AAGAGGCAGAGAGGCAACTTTCCAAGAAAGAGAGGAAAAAGAAGGAACTTGCTGAGCTTG 849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 AAGAGGCAGAGAGGCAACTTTCCAAGAAAGAGAGGAAAAAGAAGGAACTTGCTGAGCTTG 531
Query 850 AAGCTTTGTTGGCTGATTTTGGAGTTGCCCCCAAGGAGAACAATGGCCTAGAGGAATCTC 909
| |||||||||||||||||||| ||||| ||||||||||| ||||||| ||| |||| ||
Sbjct 532 AGGCTTTGTTGGCTGATTTTGGTGTTGCTCCCAAGGAGAATAATGGCCAAGATGAATTTC 591
Query 910 aagaggctggacaagaaaagaaagaagatgtcaatggagagggagagaagaaggagaaTG 969
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 AAGAGGCCAAACATGAAAAGAAAGAAGATGTCAATGGAGAGGGAGAGAAGAAGGAGAATG 651
Query 970 CAGCAGGTGGGGAGTCaaaggcatcaaaaaagaagaaaaagaaggataagcagaaggagg 1029
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 652 CAGCAGGTGGGGAGTCAAAGGCATCAAAAAAGAAGAAGAAGAAGGATAAGCAGAAGGAGG 711
Query 1030 taaaagaatctcaagagcaacaagcaaaCAACAATGCCGATGCTGTAGATGAAGCTGCTG 1089
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 712 TAAAAGAATCTCAAGAGCAGCAAGCAAACAACAATGCTGATGCTGTAGATGAAGCTGCTG 771
Query 1090 GGTCTGAACCAACTGAGGAAGAATCTCCAATTGACGTCAAGGAAAGGAT-AAAGAAGCTT 1148
||||||||||||||||||||||| |||||||||| ||||| |||||| | ||| ||||||
Sbjct 772 GGTCTGAACCAACTGAGGAAGAAACTCCAATTGATGTCAAAGAAAGGCTGAAA-AAGCTT 830
Query 1149 GCATCCATGAAGAAGAAGAAGTCAGGCAAAGAGGTGGATGCTGCAGCTAAAGCTGCTGCG 1208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 GCATCCATGAAGAAGAAGAAGTCAGGCAAAGAGGTGGATGCTGCAGCTAAAGCTGCTGCG 890
Query 1209 GAGGAGGCAGCTGCAAGACGTAAGAAGCTGGCCGCGGCAAAGAAGAAGGAGAAGAATCAC 1268
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 891 GAGGAAGCAGCTGCAAGACGTAAGAAGCTGGCCGCTGCAAAGAAGAAGGAGAAGAACCAC 950
Query 1269 TATAACCAACAGCCTGTGCGGTAAAATCCTGAATCACCACCATTTTGATCTTGATGGAAA 1328
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 951 TATAACCAACAGCCTGTGCGGTAAA-TCCTGAATCATCACCATTTTGATCTTGATGGAAA 1009
Query 1329 TGCAAATATGAACATGTATTTCGCCGTATATTGTTCATATGAGTCTCTGTCCTAATAAA 1387
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 TGCAAATATGAACATGTATTTCGCCGTATATTGTTCATATGAGTCTCTGTCCTAATAAA 1068
> Ahg328472 jgi|Araly1|328472|fgenesh1_pm.C_scaffold_7000699
Length=1650
Score = 588 bits (318), Expect = 5e-167
Identities = 766/972 (79%), Gaps = 72/972 (7%)
Strand=Plus/Plus
Query 336 ATGGCTGGAGGTGGAAACAGGAGAGATGAAGGATCGAT-CACGATCCAGAGCACTAATTT 394
|||| ||| |||||||||||||||||||| |||||||| | |||| |||| ||| || ||
Sbjct 1 ATGGTTGGTGGTGGAAACAGGAGAGATGAGGGATCGATGC-CGATTCAGAACACCAACTT 59
Query 395 GTTTGCAGCATTGGACAC-TCGTAAGAAGAAGAAGAAGTCTGACAAGGCAGGGAAGAGCA 453
|||||| || ||||| || | | | ||||||||||||||| || ||||| || |||||||
Sbjct 60 GTTTGCTGCTTTGGATACTTTG-AGGAAGAAGAAGAAGTCAGATAAGGCTGGTAAGAGCA 118
Query 454 AAGGGTCTTCTAAGTCACGAGAGCCAGAGAAGGAGCCTGAGCCTCAGGTCTAT-TGGGCT 512
||| || |||||| || || || | |||||||||||||| ||||||| | |||||
Sbjct 119 AAGCTTCCTCTAAGGGACAAGTTTCACAAAAGGAGCCTGAGCCACAGGTCT-TCTGGGCA 177
Query 513 CCTACGCCTTTGAAAGTTAAGTCTTGGGCTGATATTGATGA-TGAAGACGACGATGATGA 571
||||||||| | |||| ||| ||||||| ||||| ||| | || || || ||||| ||
Sbjct 178 CCTACGCCTCTCAAAGCAAAGGCTTGGGCCGATATCGAT-AGCGATGATGAAGATGACGA 236
Query 572 CTATTATGCAACCACTGCTCCTCCTCAGTCTGGTTGGAGTACTTCT-CTGCCTTCCCATA 630
|||||| || ||| ||||||| |||||||| | |||||| |||||| ||| ||||||
Sbjct 237 CTATTACGCTACCTCTGCTCCACCTCAGTCCGTTTGGAGCACTTCTGAAGCC-TCCCATT 295
Query 631 CTGATTCCAAAGACGTTCATGTTGAGGAAAGTGAAAGTGAGGAAGATATTCTTGATGAA- 689
| ||| | ||||||||||| | ||||||||||||||| || ||||| | ||||||||||
Sbjct 296 CCGATGCTAAAGACGTTCACGCTGAGGAAAGTGAAAGCGAAGAAGACACTCTTGATGAAG 355
Query 690 G-G-TGATGATGATGTGGAGGAAGAGCAGGAACAGGAAACAGAGGTACAGGTTCAT-C-- 744
| | |||||| |||||||||||||||||||| |||| |||||| | ||| |||||| |
Sbjct 356 GAGATGATGACGATGTGGAGGAAGAGCAGGAGCAGGGAACAGA-G-ACA-GTTCATCCAG 412
Query 745 ---CAGAGCCTGAGGTGAAGAAA-GCTCCTGAAGTTCCTGCACCTCCTAAAGAGGCAGAG 800
|||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||
Sbjct 413 AAGCAGAGCCTGAGGTGAA-AAAGGCTCCTGAAGTTCCTGCACCTCCTAAGGAGGCAGAG 471
Query 801 AGGCAACTTTCCAAGAAAGAGAGGAAAAAGAAGGAACTTGCTGAGCTTGAAGCTTTGTTG 860
|||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 472 AGGCAACTGTCCAAGAAAGAGAGGAAAAAGAAGGAACTTGCTGAGCTCGAGGCTTTGTTA 531
Query 861 GCTGATTTTGGAGTTGCCCCCAAGGA-GAACAATGGCC-TAGAGGAATCTCaagaggctg 918
|| ||||||||||| || ||||| || || ||||| | || || | |||||||| |
Sbjct 532 GCAGATTTTGGAGTCGCACCCAAAGATGAG-AATGGTCATAAAG-ACTCTCAAGATAA-G 588
Query 919 gacaagaaaagaaagaagatgtcaatgga-gagggagagaagaaggagaaTGCAGCAGGT 977
|| | || |||||||||| || |||| | ||||||||||||| |||||| || ||
Sbjct 589 GA-A-GAGAAGAAAGAAG-TG--AATG-ATGAGGGAGAGAAGAGGGAGAA--CA-CAACC 639
Query 978 GGGGAGTCaaaggcatcaaaaaagaagaaaaagaaggataagcagaaggaggtaaaagaa 1037
|| || |||||||| ||||| |||||||||||||||||||| ||||| ||| ||||||||
Sbjct 640 GGAGAATCAAAGGCCTCAAAGAAGAAGAAAAAGAAGGATAAACAGAAAGAGCTAAAAGAA 699
Query 1038 tctcaagagcaacaagcaaaCAACAATGCCGATGCTGTAGATGAAGCTGCTGGGTCTGAA 1097
| ||||||||| || | ||| ||| || ||| | | | | ||||
Sbjct 700 G-TGAAGAGCAACT--CAGA------TGC---TGCA--AG-TGA-G-TCC-G---CTGAG 738
Query 1098 CCAACTGAGGAAGAAT-CT-C--CAATTGACGTCAAGGAAAGGATAAAGAAGCTTGCATC 1153
| | ||||| | | || | | ||||| ||||| ||| | |||||||| |||||||
Sbjct 739 C-AG--GAGGA-GTCTTCTTCTTCCATTGATGTCAAAGAACGTCTAAAGAAGATTGCATC 794
Query 1154 CATGAAGAAGAAGAAGTCAGGCAAAGAGGTGGATGCTGCAGCTAA-AGCTGCTGCGGAGG 1212
|||||||||||||| ||| ||||||||||||||| ||| | || ||| || || |||
Sbjct 795 AATGAAGAAGAAGAAATCAAGCAAAGAGGTGGATGGTGCCTC-AACAGCCGCCGCAAAGG 853
Query 1213 AGGCAGCTGCAAG-ACGTAAGAAGCTGGCCGCGGCAAAGAAGAAGGAGAAGAATCACTAT 1271
| |||||||| || | | | ||| |||||||||| ||||| || || ||||| ||||
Sbjct 854 AAGCAGCTGCGAGGAAGGCA-AAGTTGGCCGCGGCGAAGAAAAAAGAAAAGAAAAACTAC 912
Query 1272 AACCAACAGCCT 1283
|| || || |||
Sbjct 913 AATCAGCAACCT 924
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63382167680
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5