BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25680.1
Length=1491
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481420 jgi|Araly1|481420|fgenesh2_kg.4__480__AT2G25680.1 2246 0.0
> Ahg481420 jgi|Araly1|481420|fgenesh2_kg.4__480__AT2G25680.1
Length=1457
Score = 2246 bits (1216), Expect = 0.0
Identities = 1389/1471 (94%), Gaps = 17/1471 (1%)
Strand=Plus/Plus
Query 2 CAAAACAGAAACAATGGAGTCTCAGTCTCAGAGAGGTCAACACGAAACCCCGAAACGTTC 61
||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 1 CAAAACACAAACAATGGAGTCTCAGTCTCAGAGTGGTCAACACCAAACCCCGAAACGTTC 60
Query 62 TAGGTTCACCGGAATGTTCCATAAACTGAAAACGAATCTTGTTTTCCGGTCGAAGCTAGC 121
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 61 TCGGTTCACCGGAATGTTCCATAAACTGAAGACGAATCTTGTTTTCCGGTCGAAGCTAGC 120
Query 122 CGAAATAAACGGTGCAATGGGTGATCTTGGTACTTACATACCAATCGTCCTCGCTTTAAC 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CGAAATAAACGGTGCAATGGGTGATCTTGGTACTTACATACCAATCGTCCTCGCTTTAAC 180
Query 182 TCTAGCCAAGGATTTGGATTTAGGCACAACACTGATATTCACCGGCATATACAACGCGAT 241
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 181 TCTGGCCAAGGATTTGGATTTAGGCACAACACTGATATTCACCGGGATATACAACGCGAT 240
Query 242 AACCGGAGCAGTTTACGGTGTCCCCATGCCGGTTCAACCGATGAAATCGATAGCAGCCGT 301
||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 241 AACTGGAGCGGTTTACGGTGTCCCCATGCCGGTTCAACCGATGAAATCGATTGCAGCCGT 300
Query 302 GGCGATTTCGTCTACCGCGGAAGATTTCGGTATACCGGAGATTATGGCTGCCGGAATATG 361
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 301 GGCGATTTCGTCTACCGCGGAAGATTTCGGTATACCGGAGATTATGGCTGCTGGAATTTG 360
Query 362 TACCGGAGGGATCTTGTTCGTGTTGGGGATCTCTGGTTTGATGCAGCTTGTGTTCAATAT 421
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 361 CACCGGAGGGATCTTGTTCGTGTTAGGGATCTCTGGTTTGATGCAGCTTGTGTTCAATAT 420
Query 422 AATCCCTTTATCGGTTGTTAGAGGGATTCAGTTGTCACAAGGCTTAGCTTTTGCCATGTC 481
||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 421 AATTCCTTTATCGGTTGTTAGAGGAATTCAGTTGTCACAAGGCTTAGCCTTTGCCATGTC 480
Query 482 TGCGGTTAAGTATATAAGGAAAGAGCAGAATTTTTCGAAGTCAAAGAGTGTTGGTGATAG 541
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 481 TGCGGTTAAGTATATAAGGAAAGAGCAGAATTTTTCAAAGTCAAAGAGTGTCGGTGATAG 540
Query 542 GCCATGGTTAGGGCTTGATGGTTTGGTTTTGGCTTTGGTTTGTGTTCTGTTCATAGTTCT 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 541 GCCATGGTTAGGGCTTGATGGTTTGGTTTTGGCTTTGGTTTGTGTTCTGTTCATAATTCT 600
Query 602 TGTgaatggagatggtgaagaagaagaggaagaggaagaaggagatggttcgagaggaag 661
||| ||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 601 TGTTAATGGAGATGGGGAAGAAGAAGAGGAAGAGGAAGAGGGAGATGGTTCAAGAGGAAG 660
Query 662 aggaagatggggttcggtgaggaaggtTATAGCTAACGTGCCATCTGCTCTGTTGATATT 721
| ||||| || |||| | ||||||||||||||||| |||||||||||||||||||||||
Sbjct 661 AAGAAGACAGGTTTCGATAAGGAAGGTTATAGCTAATGTGCCATCTGCTCTGTTGATATT 720
Query 722 CTTGTTGGGTGTTGTTTTGGCATTTATAAGGAAGCCGAGTATTGTACATGACATCAAGTT 781
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 721 CTTGTTAGGTGTTGTTTTGGCATTTATAAGGAAGCCGAGTATTGTACATGGCATCAAGTT 780
Query 782 TGGACCGTCAAAGATGAAGATTGTGAGAATAAGCCGAAAAGCATGGAGAAACGGGTTTTT 841
||||||||| ||||||||||| |||||||||||| ||||||||||| |||||| |||||
Sbjct 781 TGGACCGTCGAAGATGAAGATAGTGAGAATAAGCAAAAAAGCATGGAAAAACGGCTTTTT 840
Query 842 GAAAGGGACGGTCCCGCAGTTACCTCTT-TCTGTTCTTAATTCTGTTGTGGCTGTGTGTA 900
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 841 GAAAGGGACGGTCCCGCAGTTACCT-TTGTCTGTTCTTAATTCTGTTGTGGCTGTGTGTA 899
Query 901 AGCTGTCGTATGATCTGTTCCCCGAGAAGGAGTTCTCGGCTGCATCGGTTTCCATGACTG 960
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 900 AGCTGTCGTATGATCTGTTCCCCGAGAAGGAGTTCTCGGCTGCATCGGTTTCGATGACTG 959
Query 961 TTGGGCTGATGAATATGGTGGGATGTTGGTTTGGAGCAATGCCTACTTGTCATGGAGCTG 1020
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 960 TTGGGCTGATGAATATGGTGGGGTGTTGGTTTGGGGCAATGCCTACTTGTCATGGAGCTG 1019
Query 1021 GTGGTTTAGCCGGGCAGTATAAGTTTGGTGGGAGGAGTGGTGGGTGTGTGGCACTGTTGG 1080
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GTGGGTTAGCCGGGCAGTACAAGTTTGGTGGGAGGAGTGGTGGGTGTGTGGCACTGTTGG 1079
Query 1081 GAGTAGCTAAACTGGTGCTAGGGTTGGTCTTGGGAGGTTCATTGGTGGGTATATTGGAGA 1140
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1080 GAGTGGCTAAACTGGTGCTAGGGTTGGTCTTAGGAGGTTCATTGGTGGGTATATTGGAGA 1139
Query 1141 AGTTTCCGGTTGGTGTGCTCGGGGCATTGCTACTATTTGCAGGGGTAGAGCTTGCAATGG 1200
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1140 AGTTTCCGGTTGGTGTGCTCGGGGCATTGCTTTTATTTGCAGGGATAGAGCTTGCAATGG 1199
Query 1201 CGGCTAGAGATATGAATACAAAGGGAGATGCATTTGTAATGCTTATGTGCACAT-CAGTC 1259
||||||||||||||||||||||||||||||||||||| |||||||| ||||| | | |||
Sbjct 1200 CGGCTAGAGATATGAATACAAAGGGAGATGCATTTGTGATGCTTATATGCAC-TGCCGTC 1258
Query 1260 TCTTTGGGATCAAATGCTGCCATAGGCTTTGTTGCTGGTGAT-CTTTTGTATGTGGTTTT 1318
|||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||
Sbjct 1259 TCTTTGGGATCAAATGCTGCCATAGGCTTTGTGGCTGG-GATTCTTTTGTATGTGGTTTT 1317
Query 1319 GTGGATGCGGAACTACGGGCGAGCGAAGCCGAGCAGCCTTCCCCCGCAATCCGGTGAACA 1378
||||||| |||||||||||||||| ||||||| |||||||||||||||||||| ||||||
Sbjct 1318 GTGGATGAGGAACTACGGGCGAGCCAAGCCGATCAGCCTTCCCCCGCAATCCGATGAACA 1377
Query 1379 TGCTTGAAAGTCTTCTTTTGTTGTGTGTAGTGTTCGCTCTTCTTCTTAATGCTTTCGTAT 1438
|||||||||||||| | |||| | | | | | | ||||||| | ||||||| ||
Sbjct 1378 TGCTTGAAAGTCTT-TAGTGTTC-GC-TC-T-T-C--T-TTCTTCT-A-TGCTTTCCAAT 1426
Query 1439 AAAAAGTTCAAAACTTCTTTGAACTGCATAT 1469
||||||||||||||||| |||||||||||||
Sbjct 1427 AAAAAGTTCAAAACTTCATTGAACTGCATAT 1457
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55802208925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5