BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25690.1
Length=1446
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481422 jgi|Araly1|481422|fgenesh2_kg.4__482__AT2G25690.1 1683 0.0
> Ahg481422 jgi|Araly1|481422|fgenesh2_kg.4__482__AT2G25690.1
Length=1292
Score = 1683 bits (911), Expect = 0.0
Identities = 1207/1339 (90%), Gaps = 63/1339 (5%)
Strand=Plus/Plus
Query 40 AGAGATTACAAGATCCATATTGAAGAAGAAGAAACATCATAACCGTAAAATGCTGAAGAC 99
||||||||||||||||||||| ||||||| | ||||||||||||||||||||
Sbjct 1 AGAGATTACAAGATCCATATT---GAAGAAG-------A-AACCGTAAAATGCTGAAGAC 49
Query 100 AAGAGCAATGTTTCCTCACAAAGATCAAGCAATGTCGCTGTCTTTGGATCCACAATCTGA 159
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 50 AAGAGCAATGTTTCCTCACAAAGATCAAGCAATGTCTCTGTCTTTGGATCAACAATCTGA 109
Query 160 TCTTGTCGTCGGTCACACCAACAACAGACCAATCACTAACCCACTGGCTTTGAGTCTTTT 219
|||| | ||||| | || ||||| |||||| |||||||||||||| ||||||||||||||
Sbjct 110 TCTTCTTGTCGGACTCAACAACACCAGACCGATCACTAACCCACTTGCTTTGAGTCTTTT 169
Query 220 GATTGGTCTGAACAACAAGAACAAGTGTATCTCAGATTCTGATTTTGTCAGGAGTCCCAA 279
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 170 GATTGGTCTGAACAACAACAACAAGTGTATCTCAGATTCTGATTTTGTCAGGAGTCCCAA 229
Query 280 ATCTCCTCTTGAATTTAGGGTGTTGTCTACAATGGCTGATTCATTTTTCCTTAGATCTCC 339
||||||||||||||||||| | || |||||||||||||||||||||||||| ||||||||
Sbjct 230 ATCTCCTCTTGAATTTAGGATCTTATCTACAATGGCTGATTCATTTTTCCTCAGATCTCC 289
Query 340 TCGATCATCACTCACTGCTCATCTTAACTGTTGTTGTGGCCCTGCTGCTAAAGTTGGGTT 399
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 290 TAGATCATCACTCACTGCTCATCTTAACTGTTGTTGTGGTCCTGCTGCTAAAGTTGGTTT 349
Query 400 AAGCATTGTTGATTCTCTTGGCGATGATCGGTGTTTGTTACCGGATATCGTGTTTGGACC 459
||||||||||||||||||||| |||||||||||||||||||| ||| | |||||||||||
Sbjct 350 AAGCATTGTTGATTCTCTTGGTGATGATCGGTGTTTGTTACCTGATGTTGTGTTTGGACC 409
Query 460 GGCTTTGAGGATCAAATGTTCGGAGGTTATGGACAAACATCCCAAGTTGTTGTTCCCTGT 519
|| |||||||||||| ||||||||| | | || ||||||||||||
Sbjct 410 CGCGTTGAGGATCAAACGTTCGGAGG---T---------T---AA---GTTGTTCCCTGT 451
Query 520 AGCCAACAAGTCTAAGAAGATTGAAAATGAAAGATCTGGTGTTGTTTTCGAAATCGGTGA 579
|| | |||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 452 AG-C--CAAGTCTATGAAGATTGAAAAGGAAAGATCTGGTGTTGTTTTCGAAATCGGTGA 508
Query 580 TAACTCTTCTGAGACTGAACCGGTTGGGTTGAGAAACCGGTCCTTTTCTGCGAATGATTG 639
|||||||| |||| |||| ||| |||||||||||||||| ||||||||||||||||||||
Sbjct 509 TAACTCTTGTGAGGCTGAGCCGATTGGGTTGAGAAACCGATCCTTTTCTGCGAATGATTG 568
Query 640 TCTGCGAAAAACCCGTGTTCTGTCTCGATCCAAGTTGGGAC-AAGAAGGAGACTTCCCGG 698
||||||||||||||| ||||||||||||||||||||||| | |||||| ||||||| ||
Sbjct 569 TCTGCGAAAAACCCGAGTTCTGTCTCGATCCAAGTTGGG-CGCAGAAGGGGACTTCCAGG 627
Query 699 GGAGTGGTTCTGACAATGC-TT-T-CTC----C--TCTGAGGATGATATGGAGGATTACA 749
||||||||||||| ||||| || | ||| | ||||||||||| ||||||||||| |
Sbjct 628 GGAGTGGTTCTGAAAATGCATTCTCCTCTTGTCTATCTGAGGATGACATGGAGGATTATA 687
Query 750 CTTGTATCATTGCACATGGTCCTAACCCGAAAACCACTCATATCTATGGTGACCGAGTTT 809
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 688 CTTGTATCATTGCACATGGTCCTAACCCGAAAACCACTCATATTTATGGTGACCGAGTTT 747
Query 810 TAGAGTGTCACAAGAATGAGTTAAAGGGAGATGAAGATAATAAAGAG-A-AGT-TTGGTT 866
|||||||||||||||||||||| ||||||||||| |||||||||||| | | | | | |
Sbjct 748 TAGAGTGTCACAAGAATGAGTTGAAGGGAGATGATGATAATAAAGAGCAGAATATCGAAT 807
Query 867 CTGTGTTCCCCTCCGATAACTTCCTCGGCATCTGCAACTTCTGCAACAAGAAACTCGGAG 926
| | ||| | |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 808 CGGAGTT----T--GATAACTTCCTCAGCATCTGCAACTTCTGCAACAAGAAACTCGGAG 861
Query 927 GTGGCGACGACATATATATGTATCGAGAGAAGTCATTTTGCAGTGAAGAGTGTCGTTCAG 986
||| |||||||||||||||||| ||||| || ||||||||||||| ||||||||||||||
Sbjct 862 GTGACGACGACATATATATGTACCGAGATAAATCATTTTGCAGTGCAGAGTGTCGTTCAG 921
Query 987 AGGAGATGATGATAGATGAGGAGGATTTGGAAGAGCCGTGCATAGATATGCATGAATCTT 1046
|||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||
Sbjct 922 AGGAGATGATGATAGAAGAGGAGGACCAGGAAGAGCCGTGCATAGCTATGCATGAATCTT 981
Query 1047 TAAAGAAGCTCTTCTGAACAAGAAGCAGCTATGACGATGGCCATGGGACGAGCTTTTATA 1106
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 982 TAAAGAAGCTCTTCTGAACAAGAAGCAGCTATGACGATGGTCATGGGACGAGCTTTTATA 1041
Query 1107 GACCCGATCATCGTCTTTTAACTACCTAAAGACTTTATTATAATATATGTATTGACTAGT 1166
||||||| ||||||||||||||||||||||||||| |||||| ||| ||||||||||||
Sbjct 1042 GACCCGACCATCGTCTTTTAACTACCTAAAGACTT-ATTATA-TAT--GTATTGACTAGT 1097
Query 1167 ---GTCATGCCAATGTTAGGTAACATGTGGCACTAAACCCGTTCATCCGTCTACAAAGAG 1223
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1098 ACTGTCATGCCAATGTTAGGTAACATGTGGCATTAAACCCGTTCATCCGTCTACAAAGAG 1157
Query 1224 CTGTGTTTATGCACATCTATTAGCAGCTGCAGCAGCCACGGATGGATTGGCCGGCtttgg 1283
|||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1158 CTGTGTCTATGCACATCTATTAGCAGCTGCAGCAGCCACGGATGGATTCGTCGGCTTTCT 1217
Query 1284 ttttgtatattttgtaatgggtttcgttttttttgtttgttttgGATGTCGAAGTTGAAG 1343
|||||||||||||||||||||||| |||||||| ||| || ||||| ||||||||||||
Sbjct 1218 TTTTGTATATTTTGTAATGGGTTT--TTTTTTTT-TTT-TTCTGGATATCGAAGTTGAAG 1273
Query 1344 GATACTACTAAGATCTTAA 1362
|||||||||||||||||||
Sbjct 1274 GATACTACTAAGATCTTAA 1292
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54088147900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5