BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25700.1
Length=734
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481069 jgi|Araly1|481069|fgenesh2_kg.4__129__AT1G20140.1 693 0.0
Ahg920975 jgi|Araly1|920975|scaffold_102256.1 678 0.0
> Ahg481069 jgi|Araly1|481069|fgenesh2_kg.4__129__AT1G20140.1
Length=658
Score = 693 bits (375), Expect = 0.0
Identities = 448/484 (93%), Gaps = 2/484 (0%)
Strand=Plus/Plus
Query 90 GAAGATGATCATCCTCAAGAGCTCCGACGGTGAATCCTTCGAGGTCGAGGAAGCCGTCGC 149
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 9 GAAGAAGATCATCCTCAAGAGCTCCGACGGTGAATCCTTCGAGGTCGATGAAGCCGTCGC 68
Query 150 GGTCGAGTCCCAGACGATTAAGCACATGATCGAGGACGACTGCGTCGATAACGGAATTCC 209
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 69 GGTTGAGTCCCAGACGATTAAGCACATGATCGAGGACGACTGCGCCGATAACGGAATTCC 128
Query 210 ACTTCCCAATGTCACCGGAGCCATCCTCGCGAAGGTTATCGAGTACTGCAAGAAACACGT 269
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 129 CCTTCCCAATGTCACCGGAGCCATCCTCGCGAAGGTTATTGAGTACTGCAAGAAGCACGT 188
Query 270 TGAAGCCGCTGCTGAGGCTGGTGGAGACAAGGATTTCTATGGTTCCACCGAGAACCACGA 329
||||||||| |||||||||| ||||| |||||||||| ||||||||| |||||| | ||
Sbjct 189 TGAAGCCGCGGCTGAGGCTGACGGAGATAAGGATTTCTGTGGTTCCACTGAGAACGATGA 248
Query 330 GCTCAAGACTTGGGACAACGATTTCGTCAAAGTTGATCATCCTACTCTCTTCGATCTCCT 389
|| ||| | ||||||| ||| ||||||||||||||||| |||||||||||||||||| |
Sbjct 249 ACTTAAGGCATGGGACAGCGACTTCGTCAAAGTTGATCAGCCTACTCTCTTCGATCTCAT 308
Query 390 TCGGGCTGCCAACTATTTGAACATCAGTGGACTTCTTGACCTTACGTGCAAGGCCGTGGC 449
| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 309 CCTGGCTGCTAACTATTTGAACATCAGTGGACTTCTTGACCTAACGTGCAAGGCCGTGGC 368
Query 450 TGATCA-GATGAGAGGCAAAACTCCAGCGCAGATGCGTGAACACTTCAACATCAAGAACG 508
|||| | |||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 369 TGAT-ATGATGAGAGGCAAAACTCCAGAGCAGATGCGTGAGCACTTCAACATCAAGAACG 427
Query 509 ACTACACACCTGAGGAAGAGGCCGAGGTTCGCAATGAGAACAGGTGGGCGTTCGAGTGAT 568
| ||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||
Sbjct 428 ATTACACACCTGAGGAAGAAGCGGAGGTTCGCAATGAGAACAAATGGGCGTTCGAGTGAT 487
Query 569 TGGA 572
||||
Sbjct 488 TGGA 491
> Ahg920975 jgi|Araly1|920975|scaffold_102256.1
Length=529
Score = 678 bits (367), Expect = 0.0
Identities = 462/507 (91%), Gaps = 9/507 (2%)
Strand=Plus/Plus
Query 67 TTGCAAACGATGGCAGAAACGAAGAAGATGATCATCCTCAAGAGCTCCGACGGTGAATCC 126
|||| ||||||||||| ||||| | | |||||||||||||||||||||||||||||||
Sbjct 16 TTGC-AACGATGGCAG---CGAAG-A-A-GATCATCCTCAAGAGCTCCGACGGTGAATCC 68
Query 127 TTCGAGGTCGAGGAAGCCGTCGCGGTCGAGTCCCAGACGATTAAGCACATGATCGAGGAC 186
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 69 TTCGAGATCGATGAAGCCGTCGCGGTCGAGTCCCAGACGATTAAGCACATGATCGAGGAC 128
Query 187 GACTGCGTCGATAACGGAATTCCACTTCCCAATGTCACCGGAGCCATCCTCGCGAAGGTT 246
||||||| ||||||||||||||| ||||||||||| || ||||||||||| |||||||||
Sbjct 129 GACTGCGCCGATAACGGAATTCCGCTTCCCAATGTTACTGGAGCCATCCTTGCGAAGGTT 188
Query 247 ATCGAGTACTGCAAGAAACACGTTGAAGCCGCTGCTGAGGCTGGTGGAGACAAGGATTTC 306
|| |||||||||||||| |||||||||||||| |||||| |||| |||||| |||||||
Sbjct 189 ATTGAGTACTGCAAGAAGCACGTTGAAGCCGCGGCTGAGTCTGGCGGAGACGAGGATTTT 248
Query 307 TATGGTTCCACCGAGAACCACGAGCTCAAGACTTGGGACAACGATTTCGTCAAAGTTGAT 366
| |||||||||||||||| | || |||||| | ||||||| ||| |||||||||||||||
Sbjct 249 TGTGGTTCCACCGAGAACGATGAACTCAAGGCATGGGACAGCGACTTCGTCAAAGTTGAT 308
Query 367 CATCCTACTCTCTTCGATCTCCTTCGGGCTGCCAACTATTTGAACATCAGTGGACTTCTT 426
|| ||||| |||||||||||| | | |||||| |||||||||||||||||||||||||||
Sbjct 309 CAGCCTACACTCTTCGATCTCATCCTGGCTGCGAACTATTTGAACATCAGTGGACTTCTT 368
Query 427 GACCTTACGTGCAAGGCCGTGGCTGATCA-GATGAGAGGCAAAACTCCAGCGCAGATGCG 485
||||| ||||||||||||||||||||| | ||||||||| |||||||||| |||||||||
Sbjct 369 GACCTAACGTGCAAGGCCGTGGCTGAT-ATGATGAGAGGAAAAACTCCAGAGCAGATGCG 427
Query 486 TGAACACTTCAACATCAAGAACGACTACACACCTGAGGAAGAGGCCGAGGTTCGCAATGA 545
||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 428 TGAGCACTTCAACATCAAGAACGATTACACACCTGAGGAAGAGGAGGAGGTTCGCAATGA 487
Query 546 GAACAGGTGGGCGTTCGAGTGATTGGA 572
||||| |||||||||||||||||||||
Sbjct 488 GAACAAGTGGGCGTTCGAGTGATTGGA 514
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27029148153
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5