BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25710.1
Length=1481
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481423 jgi|Araly1|481423|fgenesh2_kg.4__483__AT2G25710.1 1836 0.0
Ahg473728 jgi|Araly1|473728|fgenesh2_kg.1__3682__AT1G37150.2 1264 0.0
> Ahg481423 jgi|Araly1|481423|fgenesh2_kg.4__483__AT2G25710.1
Length=1299
Score = 1836 bits (994), Expect = 0.0
Identities = 1146/1218 (94%), Gaps = 16/1218 (1%)
Strand=Plus/Plus
Query 28 AGCAAGATGATTGATTTGGCTA-CT--T--TATAG-TTTAATGGAAGCAGTTCGTTCAAC 81
||||||||||||||||||| || || | | | | ||||||||||||||||||||
Sbjct 1 AGCAAGATGATTGATTTGGTTACCTCATAGTTTTGTTTTAATGGAAGCAGTTCGTT---T 57
Query 82 AACAACCTTATCTAATTTTCATCTACTGAATATTTTAGTCCTGCGTTCTCTCAAGCCTCT 141
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 AACAACTTTATCTAATTTTCATCTACTGAATATTTTAGTCCTGCGTTCTCTCAAGCCTCT 117
Query 142 GCATCGTCTATCTTTCTCTTTCTCTGCCTCAGCAATGGAGAGTGATGCATCTTGTAGCTT 201
|| |||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||
Sbjct 118 GCGTCGTCTATCTTTCTCTGTCTCTGCCTCAGCAATGGAGAGTGATGCTTCTTGTAACTT 177
Query 202 AGTTTTGTGTGGGAAATCCTCTGTGGAAACTGAGGTAGCAAAGGGTTTGAAGAACAAGAA 261
||||||| |||||| |||||||||||||||||| |||||||| |||||||||| |||||
Sbjct 178 GGTTTTGTATGGGAAGTCCTCTGTGGAAACTGAGATAGCAAAGTGTTTGAAGAATAAGAA 237
Query 262 CTCTCTTAAACTCCCAGATAATACCAAAGTTTCACTCATTTTAGAATCTGAGGCTAAGAA 321
||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 238 CTCACTTACACTCCCAGATAATACCAAAGTTTCACTCTTTTTAGAATCTGAGGCTAAGAA 297
Query 322 TTTGGTTAAAGATGATGATAATTCCTTCAATCTTTCACTCTTTATGAACTCGATTATAAC 381
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 298 TTTGGTTAAAGATGATG---ATTCTTTCAATCTTTCACTCTTTATGAACTCGATTATAAC 354
Query 382 TCATCGGTTTGGACGGTTTCTCATTTGGTCTCCGCGTTTGTCTTCCACTCACGATGTTGT 441
|||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 355 TCATCGGTTTGGGCGGTTTCTCATTTGGTCTCCGCGCTTGTCTTCCACGCACGATGTTGT 414
Query 442 TTCTCATAACTTCTCTGAGCTTCCAGTTGGTTCAGTTTGTGTCACTGATATCCAGTTTAA 501
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 415 TTCTCATAATTTCTCTGAGCTTCCAGTTGGTTCAGTTTGTGTCACAGATATCCAGTTTAA 474
Query 502 GGGTCGAGGCAGAACAAAGAATGTATGGGAATCTCCAAAGGGTTGTCTTATGTATTCTTT 561
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 AGGTCGAGGCAGAACAAAGAATGTATGGGAATCTCCAAAGGGTTGTCTTATGTATTCTTT 534
Query 562 TACTCTAGAAATGGAAGATGGTCGAGTCGTGCCTTTGATACAGTATGTGGTATCTCTTGC 621
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 535 TACTCTAGAAATGGAAGATGGTCGAATCGTGCCGTTGATACAGTATGTGGTATCTCTTGC 594
Query 622 TGTAACTGAGGCAGTGAAAGATGTTTGTGACAAGAAGGGTTTGCCGTACATTGATGTTAA 681
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 595 TGTAACTGAGGCAGTGAAAGATGTTTGTGACAAGAAGGGTTTGCCGTACATTGACGTTAA 654
Query 682 AATAAAGTGGCCAAATGATCTGTACGTGAATGGTCTTAAGGTTGGAGGCATTTTGTGTAC 741
||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 655 AATTAAGTGGCCAAATGATCTCTACTTGAATGGTCTTAAGGTTGGAGGCATTTTGTGTAC 714
Query 742 CTCTACGTATAGATCAAAGAAGTTCAATGTCAGTGTTGGTGTGGGGTTGAATGTGGACAA 801
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 715 CTCTACATATAGATCAAAGAAGTTCCATGTCAGTGTTGGTGTGGGGTTGAATGTGGACAA 774
Query 802 CGGGCAACCGACCACGTGCTTAAATGCAGTACTAAAAGGCATGGCTCCTGAATCAAACCT 861
|| ||||||||| ||||| |||||||||||||||||||||||| |||||||||||| |||
Sbjct 775 CGAGCAACCGACGACGTGTTTAAATGCAGTACTAAAAGGCATGTCTCCTGAATCAACCCT 834
Query 862 ACTTAAAAGAGAGGAAATCCTTGGTGCCTTCTTTCATAAATTTGAAAAATTCTTCGATCT 921
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 835 ACTTAAAAGAGAGGAAATCCTTGGTGCCTTCTTTCATAAATTTGAAAAATTCTTTGATCT 894
Query 922 ATTCATGGACCAAGGTTTTAAATCTCTCGAAGAGCTTTACTACAGGACATGGCTACACAG 981
||||||||||||||| ||||||||||| || |||||||||||||| |||||| |||||||
Sbjct 895 ATTCATGGACCAAGGCTTTAAATCTCTGGAGGAGCTTTACTACAGAACATGGTTACACAG 954
Query 982 CGAGCAAAGAGTGATTGTTGAAGACAAAGTAGAGGACCAAGTTGTTCAAAATGTTGTGAC 1041
||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 955 TGAGCAAAGAGTGATTGTTGAAGAAAAAGGAGAGGACCAAGTTGTTCAAAATGTTGTGAC 1014
Query 1042 TATCCAGGGTTTGACTTCTTCTGGATATTTGCTGGCTGTTGGAGATGACAATCAAATGTA 1101
||||||||||||||| ||||| |||||||| |||||| ||||||||||||||||||||||
Sbjct 1015 TATCCAGGGTTTGACATCTTCAGGATATTTACTGGCTATTGGAGATGACAATCAAATGTA 1074
Query 1102 TGAGCTTCACCCTGATGGCAATAGTTTTGACTTTTTCAAAGGTCTGGTTCGAAGAAAAAT 1161
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1075 TGAGCTTCACCCTGATGGCAATAGTTTCGACTTTTTCAAAGGTCTGGTTCGAAGAAAAAT 1134
Query 1162 ATGATCCAAAGATTTTCTTGCTGGTGAAAGTAGATGTTGTGCGTTGTTTTAGTACCATGG 1221
|||||||||||||||||||||||||| ||||||||| |||| | |||| ||||||||||
Sbjct 1135 ATGATCCAAAGATTTTCTTGCTGGTGGAAGTAGATGCTGTG--T-GTTT-AGTACCATGG 1190
Query 1222 ACACAACTATTATCAGTT 1239
|||||||| ||||||||
Sbjct 1191 CCACAACTAATATCAGTT 1208
> Ahg473728 jgi|Araly1|473728|fgenesh2_kg.1__3682__AT1G37150.2
Length=995
Score = 1264 bits (684), Expect = 0.0
Identities = 903/1007 (90%), Gaps = 21/1007 (2%)
Strand=Plus/Plus
Query 176 ATGGAGAGTGATGCATCTTGTAGCTTAGTTTTGTGTGGGAAATCCTCTGTGGAAACTGAG 235
||||| | |||||| || |||||||| || || ||||| ||||| ||||| ||||||||
Sbjct 1 ATGGACATTGATGCTTCGTGTAGCTTGGTATTATGTGGTAAATCTTCTGTAGAAACTGAT 60
Query 236 GTAGCAA-AGGGTTTGAAGAACAAGAAC-TCTCTTAAACTCCCAGATAATACCAAAGTTT 293
||||| | || |||||||||| ||| | |||||||||||||||||||||||||||||
Sbjct 61 ACAGCAACA-CGTATGAAGAACAATAACGT-TCTTAAACTCCCAGATAATACCAAAGTTT 118
Query 294 CACTCATTTTAGAATCTGAGGCT-AAGAATTTGGTTAAAGATGATGATAATTCCTTCAAT 352
|| || ||||| ||||||| | | |||||||||| | ||| |||||| |||||||||||
Sbjct 119 CAATCTTTTTACAATCTGA-GATCAAGAATTTGG-T-CAGA-GATGATGATTCCTTCAAT 174
Query 353 CTTTCACTCTTTATGAACTCGATTAT-AACTCATCGGTTTGGACGGTTTCTCATTTGGTC 411
|||||||| || |||||||||||| | |||||||||||||| |||||||||||||||||
Sbjct 175 CTTTCACTATTCATGAACTCGATT-TCGACTCATCGGTTTGGTCGGTTTCTCATTTGGTC 233
Query 412 TCCGCGT-TTGTCTTCCACTCACGATGTTGTTTCTCATAACTTCTCTGAGCTTCCAGTTG 470
||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 234 TCC-ATTCTTGTCTTCCACTCACGATGTTGTTTCTCATAACTTCTCTGAGATTCCAGTTG 292
Query 471 GTTCAGTTTGTGTCACTGATATCCAGTTTAAGGGTCGAGGCAGAACAAAGAATGTATGGG 530
| ||||| |||||||| ||||| |||||||| ||||||||||||||||||||||| ||||
Sbjct 293 GGTCAGTGTGTGTCACAGATATTCAGTTTAAAGGTCGAGGCAGAACAAAGAATGTTTGGG 352
Query 531 AATCTCCAAAGGGTTGTCTTATGTATTCTTTTACTC-TAGAAATGGAAGATGGTCGAGTC 589
|||||||||| ||||||||||||||||| ||||| | ||||||||||||||||||||||
Sbjct 353 AATCTCCAAAAGGTTGTCTTATGTATTCGTTTAC-CGTAGAAATGGAAGATGGTCGAGTA 411
Query 590 GTGCCTTTGATACAGTATGTGGTATCTCTTGCTGTAACTGAGGCAGTGAAAGATGTTTGT 649
|||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||
Sbjct 412 GTGCCTTTGATACAGTATGTAGTGTCTCTTGCTGTTACTGAGGCAGTGAAAGATGTTTGT 471
Query 650 GACAAGAAGGGTTTGCCGTACATTGATGTTAAAATAAAGTGGCCAAATGATCTGTACGTG 709
||||||||||||||| |||| |||||||||||||||||||||||||||||||| || ||
Sbjct 472 GACAAGAAGGGTTTGTCGTATATTGATGTTAAAATAAAGTGGCCAAATGATCTATATTTG 531
Query 710 AATGGTCTTAAGGTTGGAGGCATTTTGTGTACCTCTACGTATAGATCAAAGAAGTTCAAT 769
||||| |||||||||||||||||||||||||| || || || |||||| ||||||| ||
Sbjct 532 AATGGCCTTAAGGTTGGAGGCATTTTGTGTACTTCCACATACGGATCAAGGAAGTTCCAT 591
Query 770 GTCAGTGTTGGTGTGGGGTTGAATGTGGACAACGGGCAACCGACCACGTGCTTAAATGCA 829
||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||
Sbjct 592 GTCAGTGTTGGTGTGGGATTGAATGTGGACAACGAGAAACCGACCACGTGCTTAAATGCA 651
Query 830 GTACTAAAAGGC-ATGGCTCCTGAATCAAACCTACTTAAAAGAGAGGAAATCCTTGGTGC 888
|||||||||| | || | ||||| |||||| |||||||||||||| ||||| ||||||||
Sbjct 652 GTACTAAAAGACAATTG-TCCTGCATCAAATCTACTTAAAAGAGAAGAAATTCTTGGTGC 710
Query 889 CTTCTTTCATAAATTTGAAAAATTCTTCGATCTATTCATGGACCAAGGTTTTAAATCTCT 948
||||||||||||||| |||| |||||| |||||||||||||| |||||||||||||||||
Sbjct 711 CTTCTTTCATAAATTCGAAACATTCTTTGATCTATTCATGGAACAAGGTTTTAAATCTCT 770
Query 949 CGAAGAGCTTTACTACAGGACATGGCTACACAGC-GAGCAAAGAGTGATTGTTGAAGACA 1007
||| ||||||||||| ||||||||||| |||||| || |||||||||||||||||||| |
Sbjct 771 CGAGGAGCTTTACTATAGGACATGGCTTCACAGCGGA-CAAAGAGTGATTGTTGAAGA-A 828
Query 1008 AAGTA-GAGGACCAAGTTGTTCAAAATGTTGTGACTATCCAGGGTTTGACTTCTTCTGGA 1066
|| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 829 AAAAACGAGGACCAAGTTGTTCAAAATGTTGTGACTATCCAGGGTTTGACTTCTTCGGGA 888
Query 1067 TATTTGCTGGCTGTTGGAGATGACAATCAAATGTATGAGCTTCACCCTGATGGCAATAGT 1126
|||||||| ||| |||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 889 TATTTGCTAGCTATTGGAGATGACAATGTAATGTATGAGCTTCATCCTGATGGCAATAGT 948
Query 1127 TTTGACTTTTTCAAAGGTCTGGTTCGAAGAAAAATATGATCCAAAGA 1173
||||| ||||||||||| ||||| ||||||||| ||||| |||||||
Sbjct 949 TTTGATTTTTTCAAAGGGCTGGTCCGAAGAAAACTATGAACCAAAGA 995
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55421306475
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5