BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G25720.1

Length=534
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg932740 jgi|Araly1|932740|scaffold_400728.1                        486    6e-137


> Ahg932740 jgi|Araly1|932740|scaffold_400728.1
Length=385

 Score =  486 bits (263),  Expect = 6e-137
 Identities = 335/368 (91%), Gaps = 11/368 (3%)
 Strand=Plus/Plus

Query  36   ATGTCAGACCCTTACGAGAGAGTGAATGGTGGAAGATTGGCGTTCAAAGGAGGAGATCTA  95
            |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  21   ATGTCAGATCCTTACGAGAGAGTGAACGGTGGAAGATTGGCGTTCAAAGGAGGAGATCTA  80

Query  96   GCGACAAGGAAATCGATCgaaaagaagaagaagaagaagcagaagaagaacaaagaaaag  155
            || ||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||
Sbjct  81   GCCACAAGGAAATCGATCGACAAGAAGAATAAGAAGAAGCAGAAGAAGAAGAAAGAAAAG  140

Query  156  CTCGACGGTGTTGAGGATGGAGCGAAGACAGCTCCTGACGGTTCACCCCCTCCCGCCGCT  215
            |||||  | |  || ||   || |||||  ||||| ||||||||| || || ||||||||
Sbjct  141  CTCGA--G-G--GA-GA---AGTGAAGATGGCTCCCGACGGTTCAGCCACTTCCGCCGCT  191

Query  216  GCCGCTGGAGATGAAGATATATACTCAATTGATGCGGCGAAGAAGAAGAAGTACGATGAC  275
            |||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  192  GCCGTTGTAGATGATGATATATACTCAATTGATGCGGCGAAGAAGAAGAAGTACGATGAC  251

Query  276  CTATTTCCTGTGGAGGCGAAGAAGTTCGGTTACATTCCGAAAGCAAATTTCGAATCCAGG  335
            || ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
Sbjct  252  CTGTTTCCTGTGGAGGCGAAGAAGTTTGGTTACATTCCGAAATCAAATTTCGAATCCATG  311

Query  336  GAAGATGCTCTTGACGATCGCGTCAAGAAGAAAGCTGATCGCTACTGTAAATAAACTCTT  395
            ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| 
Sbjct  312  GAAGATGCTCTTGACGATCGCGTCAAGAAGAAAGCTGATCGTTATTGTAAATAAACTCT-  370

Query  396  CTTGTTTG  403
            ||| ||||
Sbjct  371  CTT-TTTG  377



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19459350390


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5