BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G25735.1

Length=700
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg932743 jgi|Araly1|932743|scaffold_400731.1                        536    7e-152
  Ahg908631 jgi|Araly1|908631|Al_scaffold_0002_1712                   71.3    9e-12 


> Ahg932743 jgi|Araly1|932743|scaffold_400731.1
Length=395

 Score =  536 bits (290),  Expect = 7e-152
 Identities = 361/395 (91%), Gaps = 6/395 (2%)
 Strand=Plus/Plus

Query  36   GAACAGAACAGAAGGAAGAAATGATGTTAGAATCTTCAAGCAAAAAGAGATGGAACGTTA  95
            |||||||| | ||  || |||||||||| |||||| ||||||| ||||||| |   |  |
Sbjct  1    GAACAGAAGAAAAAAAAAAAATGATGTTTGAATCTCCAAGCAAGAAGAGAT-G---G--A  54

Query  96   ACGTGTTATCATCAGCTTCATCTCACAGAGAGACAATTGTACTTGGAAGATATAGCAAGA  155
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  55   ACGTGTTATCATCAGCTTCATCTTACAGAGAGACAATTGTACTTGGAAGATATAGCAAGA  114

Query  156  GTTGCAGAGAACAGAAGCAACACCAACGAAGAGAAAGGCTCTTGCCCAAATGGAAGGTTT  215
            |||| ||||||||||||||||| |||||||||| ||| ||||| ||||| ||||||||| 
Sbjct  115  GTTGTAGAGAACAGAAGCAACAACAACGAAGAGCAAGACTCTTTCCCAAGTGGAAGGTTA  174

Query  216  TGTTGATGAAGCTTAAGCTCTTGCCTTCTCGTGCTTCTTCCACTAAGGTCGTGGCTTATG  275
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  175  TGTTGATGAAGCTTAAGCTCTTGCCTTCTCGTTCTTCTTCCACTAAGGTCGTGGCTTATG  234

Query  276  AGCCTTGTGATTACTCTTTGAATTTTGATCAAGGTCCAGGATGGCACGACCACGATGAGC  335
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  235  AGCCTTGCGATTACTCTTTGAATTTTGATCAAGGTCCAGGATGGCACGACCACGATGAGC  294

Query  336  CTGAGAATCTTTCACGGTCTTTCTCCTGTCGCTTCGCTGATCCCACACGGATCCGAGAAA  395
            ||||||||||||| |||||||| || | ||||||| ||||||| || ||||| |||| ||
Sbjct  295  CTGAGAATCTTTCTCGGTCTTTTTCTTCTCGCTTCTCTGATCCTACTCGGATTCGAGCAA  354

Query  396  CACGCTTTCTCTTGTATTAAGTTTACTTTTCTTTT  430
            ||||||| |||||||||||||||||||||||||||
Sbjct  355  CACGCTTGCTCTTGTATTAAGTTTACTTTTCTTTT  389


> Ahg908631 jgi|Araly1|908631|Al_scaffold_0002_1712
Length=561

 Score = 71.3 bits (38),  Expect = 9e-12
 Identities = 43/45 (96%), Gaps = 1/45 (2%)
 Strand=Plus/Minus

Query  220  GATGAAGCTTAAGCTCTTGCCTTCTCGTGCTTCTTCCACTA-AGG  263
            |||||||||||||||||||||||||||| |||||||||||| |||
Sbjct  505  GATGAAGCTTAAGCTCTTGCCTTCTCGTTCTTCTTCCACTAGAGG  461



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25732968975


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5