BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25737.1
Length=1892
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481426 jgi|Araly1|481426|fgenesh2_kg.4__486__AT2G25737.1 2361 0.0
> Ahg481426 jgi|Araly1|481426|fgenesh2_kg.4__486__AT2G25737.1
Length=1625
Score = 2361 bits (1278), Expect = 0.0
Identities = 1463/1550 (94%), Gaps = 21/1550 (1%)
Strand=Plus/Plus
Query 223 TTCTTCTTCGTATACAATGACGAAATTGAGATCGAAATGGTTAGGTTTAAGATCTGTAAC 282
|||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 79 TTCTTCTTCGTAAACAATGGCGAAATTGAGATCGAAATGGTTAGGTTTAAGATCTGTAAT 138
Query 283 CAT-CTTCTTAATCAATTTCTCTCTAGCTTTTGCTTTCGTTTCCGCTGAGAGAAG----- 336
||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 139 CATGGTT-TTAATCAATTTCTCTCTAGCTTTTGCTTTCGTTTCCGCTGAGAGAAGAATCT 197
Query 337 ----AGGAAAATCTCTGAGGTTAAGTACAGACGAAACGCGGGAAAATGAATCAAGTTTCT 392
|||||||||||||||||||| | |||| ||||||||||||||||||||||||||||
Sbjct 198 TCAAAGGAAAATCTCTGAGGTTAAATTCAGATGAAACGCGGGAAAATGAATCAAGTTTCT 257
Query 393 TCCTTAAAGCTATCAATTTTCTATGGGAATCTGATCAAATAGGTTATCGTCATGTTTGGC 452
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 258 TCCTTAAAGCTGTCAATTTTCTATGGGAATCTGATCAAATTGGTTATCGTCATGTTTGGC 317
Query 453 CTGAATTTGAGTTTAATTGGCAAATTGTATTGGGAACACTTGTTGGATTCTTTGGAGCTG 512
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 318 CTGAATTTGAGTTTAATTGGCAAATTGTTTTGGGAACTCTTGTTGGATTCTTTGGAGCTG 377
Query 513 CGTTTGGTAGTGTAGGTGGTGTTGGTGGTGGTGGGATTTTCGTACCTATGCTTAGTTTGA 572
| ||||||||||| || ||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 378 CCTTTGGTAGTGTTGGAGGTGTTGGTGGTGGTGGCATTTTTGTACCTATGCTTAGTTTGA 437
Query 573 TTATTGGGTTTGATCCTAAATCAGCTACAGCTATTTCAAAATGTATGATTATGGGTGCTT 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 438 TTATTGGGTTTGATCCTAAATCAGCTACAGCTATTTCAAAATGTATGATTATGGGTGCTT 497
Query 633 CTGTGTCCACTGTGTATTACAATCTTAGATTGAGGCATCCAACACTTGACATGCCTATCA 692
||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 498 CTGTGTCAACTGTCTATTACAATCTTAGATTGAGGCATCCAACACTTGATATGCCAATCA 557
Query 693 TTGATTATGATCTCGCTTTACTGATCCAGCCTATGCTTATGCTTGGGATTAGTATTGGTG 752
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 558 TTGATTATGATCTCGCGTTGCTGATCCAGCCTATGCTTATGCTTGGGATTAGTATTGGTG 617
Query 753 TTGCTTTTAATGTGATTTTTCCAGATTGGTTGGTTACAGTTCTACTCATCGTCCTCTTTC 812
||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 618 TTGCTTTTAATGTTATTTTTCCGGATTGGTTGGTTACAGTTCTACTCATCATCCTCTTTC 677
Query 813 TTGGCACGTCAACAAAGGCGTTCTTGAAGGGTTCTGAGACTTGGAACAAGGAGACTATAG 872
| ||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 678 TAGGCACATCAACAAAGGCGTTTTTGAAGGGTTCTGAGACTTGGAACAAGGAAACTATAG 737
Query 873 AGAAAAAGGAGGCTGCTAAACGTTTAGAGTCAAATGGTGTATCTGGCACAGAAGTGGAAT 932
||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 738 AGAAAAAGGAGGCTGCTAAGCGTTTAGAGTCAAATGGTGTATCTGGGGCAGAAGTGGAAT 797
Query 933 ACGTGCCTCTTCCCGCAGCCCCGAGCACGAACCCTGGAAACAAAAAGAAAGAAGAAGTAA 992
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 798 ACGTGCCTCTTCCCGCAGCCCCGAGCACGAACCCTGGAAACAAAAAGAAAGAAGAAGTAA 857
Query 993 GTATTATTGAAAATGTATACTGGAAGGAACTGGGACTTCTCGTGTTTGTCTGGATTGTGT 1052
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 858 GTATTATTGAAAATGTATATTGGAAGGAACTGGGACTTCTCGTGTTTGTCTGGGTTGTGT 917
Query 1053 TCCTGGCGCTGCAGATATCCAAGCAAAATCTGGCTAATTGTTCAGTAGCATATTGGGTCA 1112
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 918 TCCTGGCACTGCAGATATCCAAGCAAAATCTGGCTAATTGTTCAGTAGCATATTGGGTCA 977
Query 1113 TAAATCTGTTACAGATTCCGGTTGCAGTTGGTGTATCAGGCTATGAAGCAGTAGCTTTGT 1172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 978 TAAATCTGTTACAGATTCCGGTTGCAGTTGGTGTATCAGGCTATGAAGCAGTAGCTTTGT 1037
Query 1173 ACCAGGGTAGAAGAATCATTGCGTCTAA-GGGACAAGGAGACTCGAATTTCACCGTTGGT 1231
|||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||
Sbjct 1038 ACCAGGGTAGAAGAATCATTGCATCTAAAGGG-CAAGGAGACTCGAATTTCACCGTTGGT 1096
Query 1232 CAGCTTGTTATGTATTGTACATTTGGCATAATAGCAGGCATAGTCGGTGGTTTACTTGGT 1291
||||| |||||||| ||||||||||| ||| | |||||||||||||||||||||||||||
Sbjct 1097 CAGCTAGTTATGTACTGTACATTTGGTATATTGGCAGGCATAGTCGGTGGTTTACTTGGT 1156
Query 1292 TTAGGCGGAGGTTTCATCATGGGTCCATTGTTCTTGGAGCTCGGTGTCCCACCACAGGTC 1351
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1157 TTAGGCGGAGGTTTCATCATGGGTCCATTGTTCTTGGAGCTCGGTGTCCCGCCACAGGTT 1216
Query 1352 TCAAGTGCCACAGCCACTTTTGCAATGACTTTCTCATCATCCATGTCTGTTGTAGAATAC 1411
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1217 TCAAGTGCCACAGCCACTTTTGCAATGACTTTCTCTTCATCAATGTCTGTTGTAGAATAC 1276
Query 1412 TATCTTCTCAAACGATTCCCTGTTCCATATGCTTTGTACCTTGTGGGAGTGGCAACAATT 1471
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 1277 TATCTTCTCAAACGATTCCCTGTTCCATATGCTCTGTACCTTGTTGGAGTGGCAACAATT 1336
Query 1472 GCAGCTTGGGTTGGACAGCATGTAGTCAGAAGGCTAATCGCAGCCATCGGCCGCGCATCT 1531
||||||| || |||||||||||||| |||||||| || |||||| ||||||| ||||||
Sbjct 1337 GCAGCTTTTGTAGGACAGCATGTAGTTAGAAGGCTCATTGCAGCCCTCGGCCGGGCATCT 1396
Query 1532 CTCATCATCTTCATCCTCGCGTCCATGATCTTTATCAGTGCGATATCGCTTGGTGGCGTG 1591
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1397 CTCATAATCTTCATCCTCGCGTCCATGATTTTTATCAGTGCGATATCGCTTGGTGGCGTG 1456
Query 1592 GGAATAGTGAATATGATCGGCAAAATCCAACGGCATGAGTACATGGGTTTCGAGAACCTT 1651
||||||||||| ||||||||||||||||||||||| ||||||||||| ||||| |||||
Sbjct 1457 GGAATAGTGAACATGATCGGCAAAATCCAACGGCACGAGTACATGGGATTCGAAAACCTC 1516
Query 1652 TGCAAGTACGGTGGCTGACGTTGTACTTAGCATGTAGCTTGTTAA----GTGTTAAACTT 1707
||||||||||||||||||||||||||| |||||||| |||||||| ||||||| |||
Sbjct 1517 TGCAAGTACGGTGGCTGACGTTGTACTCAGCATGTAACTTGTTAATTAAGTGTTAA-CTT 1575
Query 1708 ATAAAGCTTCATTCTTGATGGCAAGACT--T-ATGGTCTTTTGATTGTGT 1754
||||||||||||| |||||||||||||| | ||||||| ||||||||||
Sbjct 1576 ATAAAGCTTCATTTTTGATGGCAAGACTACTTATGGTCTATTGATTGTGT 1625
Score = 137 bits (74), Expect = 2e-31
Identities = 83/87 (95%), Gaps = 1/87 (1%)
Strand=Plus/Plus
Query 90 CCTGTCGTGTGAATCCTGATCTCGCTTTAGATTGTGG-AAGCCTTCGACACATTTCCCAT 148
|||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||| |
Sbjct 1 CCTGTCGTGTGAATCCTGATCTCGCTTTAGATCGTGGAAAGCGTTCGACACATTTCCCCT 60
Query 149 TTTGAATTTGtcttcttcttcttcttc 175
|||||||||||||||||||||||||||
Sbjct 61 TTTGAATTTGTCTTCTTCTTCTTCTTC 87
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71076397170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5