BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25740.1
Length=2010
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481427 jgi|Araly1|481427|fgenesh2_kg.4__487__AT2G25740.1 2992 0.0
> Ahg481427 jgi|Araly1|481427|fgenesh2_kg.4__487__AT2G25740.1
Length=1970
Score = 2992 bits (1620), Expect = 0.0
Identities = 1872/1990 (94%), Gaps = 32/1990 (2%)
Strand=Plus/Plus
Query 1 GAGGTGGCGAAAGGGGACTCTCTCTACTGGCGGGTAAACG--AAACTC--GAG-AG-AAA 54
|||||||||||||| |||||| |||| ||||||||||||| |||||| ||| || |||
Sbjct 1 GAGGTGGCGAAAGGAGACTCTATCTATTGGCGGGTAAACGAAAAACTCGAGAGAAGAAAA 60
Query 55 TGGACGACGAGAGGATTCGAGAGCGAGAGAGACTTCAGATCGAGCAGATTCGTGAGCTTG 114
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 TGGACGACGAGAGGATTCGTGAGAGAGAGAGACTTCAGATCGAGCAGATTCGTGAGCTTG 120
Query 115 ATTTCGAGGAATTACAAGTCGAAGAAGTCGATGACCTTCACGATTCCGATTCCGATGATA 174
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATTTCGAAGAATTACAAGTCGAAGAAGTCGATGACCTTCACGATTCCGATTCCGATG--- 177
Query 175 ATAATGATGATCTCTCTTCATTTCCTTTCTCTTCCCACGCTCAAGCTTCTGGTAACCTCG 234
|||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 178 ATAATGATCATCTCTCTTCATTTCCCTTCTCTTCCCACGCTCAAGCTTCTGGTAACCTTG 237
Query 235 GTGATGATGAACTTATGTTCAACCCAGCTTTGGCTTCTTTACATATGTATCTTGGCGAGG 294
||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 238 GTGATGATGAATTTATTTTCAACCCAGCTTTGGCTTCTTTACATATGTATCTTGGTGAGG 297
Query 295 TTGAAGACACTCAAAACAGAGTTTCTTTTGTGGATGGAGGAACGGTATTGAAGATCCCGC 354
|||| ||||||||||||||| || |||||||||||||||| || || ||||| |||||||
Sbjct 298 TTGAGGACACTCAAAACAGAATTGCTTTTGTGGATGGAGGCACAGTTTTGAAAATCCCGC 357
Query 355 TTTTCTATCTTGAAGGAGTGGTTCTATTTCCTGAGGCAACACTCCCCCTTAGAATCATTC 414
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 358 TTTTCTATCTTGAAGGAGTGGTTCTATTTCCTGAGGCAACACTACCCCTTAGAATCGTTC 417
Query 415 AGCCTAGTTTCTTGGCTGCTGTTGAGAGAGCTTTGAACCAAGCTAACGCTCCTTCTACGA 474
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 418 AGCCTAGTTTCTTGGCTGCTGTTGAGAGAGCTTTGAACCAAGCTAACGCTCCATCTACCA 477
Query 475 TAGGTGTGATTCGTGTTTACAGAGAAGGGGCTCAGTTTAAGTATGCCAGTGTGGGGACAA 534
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 478 TAGGTGTGATTCGTGTTTACAGAGAAGGGGCTCAGTTCAAGTATGCCAGTGTGGGGACAA 537
Query 535 CCGCAGAGATACGACAATACCGTCGACTTGGTGATGGTTCATTCAATGTTATTACTCGTG 594
|||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 538 CCGCCGAGATAAGACAATACCGTCGACTTGGTGATGGTTCATTCAACATTATTACTCGTG 597
Query 595 GACAACAACGTTTCCGTTTAAAGCATCGCTGGACTGACGTTGAAGGATTTACTTGCGGAG 654
|||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 598 GACAACAACGGTTCCGTTTAAAGCGTCGCTGGACTGACGTTGAAGGATTTCCTTGCGGAG 657
Query 655 AGGTTCAAATTGTTGATGAAGATGTGCCCTTGAGGACTCCCAGGGACGCGTTTGGAAAAC 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 658 AGGTTCAAATTGTTGATGAAGATGTGCCCTTGAGGACTCCCAGGGACGCGTTTGGGAAAC 717
Query 715 TGGTACCGCTAAGCAAGTTGCGAGGTCGCTATCCCTTGGGTACAGCATCTTTATCTACAC 774
|||||||| ||||||||||||||| |||||| |||| | |||||| |||||||||||||
Sbjct 718 TGGTACCGTTAAGCAAGTTGCGAGATCGCTACCCCTCGAGTACAGTGTCTTTATCTACAC 777
Query 775 CTCTTAGAGATATGGACGCACAGTCTGAAGCAAATTCTGAAGAAAGTTTTGAAAGTGCTC 834
||||||||||| | | ||||||||||||||||||||||||||||||||||
Sbjct 778 CTCTTAGAGAT-T----------T-GGAAGCAAATTCTGAAGAAAGTTTTGAAAGTGCTC 825
Query 835 TTTCTCCGTCAGAAAAAAGACTTCATTATTCAGTAGTTGACTCAATATTTTGTAACTCAA 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 826 TTTCTCCGTCAGAAAAAAGACTTCATTATTCAGTAGTTGACTCAATATTTTGTAACTCAA 885
Query 895 CAAGTAGTGATGATGATCAAGTAGTCAGCACCTCTACAGTCCAATCTAGTGGGTCTAATC 954
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 886 CAAGTAGTGATGATGATCAAGTAGTCAGCACCTCTACAATCCAATCTAGTGGGTCTAATC 945
Query 955 CATACAGCTTGAGGTCCATTGGATGTTTAGCTTCTAGCCATGACAACGAAAATGAAGACG 1014
||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 946 CATACAGCTCGAGGTCCATTGGATGTTTAGCTTCTAGCCATGACGACGAAAATGAAGAGG 1005
Query 1015 AGCAATCGGCAATTGGCAAGACTCCTGTTTCACAAGAGAAATATCAGAAGCAAAATAGGC 1074
|||||||| ||||||||||||||||| | |||||| ||||||||||||||||||||||||
Sbjct 1006 AGCAATCGACAATTGGCAAGACTCCTATCTCACAAAAGAAATATCAGAAGCAAAATAGGC 1065
Query 1075 TGGCAAGTTTCCGGCAAAATACTGATCTAAGCCGATTCCGTATGACGCCAAGAGCATTTT 1134
|||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 1066 TGGCAAGTTTCCGGGAAAGTACTGATCTAAGCCGATTCCGTATGACCCCAAGAGCATTTT 1125
Query 1135 GGCCATTCTGGGCGTATAGGATGTTTGACTCATATTATCTTGCTCAAAGAGCAG-TCGAT 1193
|||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||
Sbjct 1126 GGCCATTCTGGGCGTATAGGATGTACGACTCATATTATCTTGCTCAAAGAGCAGCT-GAT 1184
Query 1194 CTGTGGAAGCAAATAGTTGGGGTTCCAAACATGGAGGCTTTTGTGAATAAACCAGATATT 1253
||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||
Sbjct 1185 CTGTGGAAGCAAATAGTTGCGGTTCCAAACATGGAGGCTTTTGTGAATACACCAAATATT 1244
Query 1254 CTATCCTTTTCCATTGCGAGTAAAATTCCCGTGTCTGAGTCAATTAGACAAGAGCTCTTG 1313
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1245 CTATCCTTTTCCATTGCTAGTAAAATTCCTGTGTCTGAGTCAATTAGACAAGAGCTCTTG 1304
Query 1314 GAGCTGGATGGAGTCTCCTATAGATTGCAGCGAGAAATTGAATTGCTTGAAAGTTTTGAT 1373
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1305 GAGCTGGATGGAGTCTCCTATAGATTGCAGCGAGAAATTGAATTGCTTGAAAGTTTTGAC 1364
Query 1374 CGTGTTCGATGTATACACTGTCAGACTGTCATAGCAAGAAGAAAAGACATGTTGGTTATG 1433
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1365 CGTGTTCGTTGTATACACTGTCAGACTGTCATAGCAAGAAGAAAAGACATGTTGGTTATG 1424
Query 1434 TCTAATGAAGGTCCTCTTGGTGCCTACGTAAACCCACATGGCTATGTCCACGAGATAATG 1493
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1425 TCTAATGAAGGTCCTCTTGGTGCCTACGTAAACCCACATGGCTATGTGCACGAGATAATG 1484
Query 1494 ACCTTTTACAAAGCAAATGACATAGCGCTTAGAGGTAGACCTGTTAAAAAGGACAGCTGG 1553
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1485 ACCTTTTACAAAGCAAATGACATAGCGATTAGAGGTAGACCTGTTAAAAAGGACAGCTGG 1544
Query 1554 TTTCCTGGGTATGCTTGGACAATTGCAAACTGTGCGACGTGCGAAACCCAGCTTGGTTGG 1613
|||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1545 TTTCCTGGGTATGCATGGACAATTGCAAACTGTGCGACGTGTGAAACCCAACTTGGTTGG 1604
Query 1614 CATTTCACAGCGACAAACAAGAAGTTGAAGCCATCGTCTTTTTGGGCAGTTCGTGGCTCA 1673
| ||||||||||||||| ||||||||||||||||| ||||| ||||||||||| ||||||
Sbjct 1605 CTTTTCACAGCGACAAATAAGAAGTTGAAGCCATCATCTTTCTGGGCAGTTCGGGGCTCA 1664
Query 1674 CAGGTTGCAGATGACATGCGCTGAAACAGCA-TTAAAACCAGGTCTCACTCACGGATCAA 1732
||||| ||||||||||||||||||||||||| ||||| |||||||||||| | |||||||
Sbjct 1665 CAGGTCGCAGATGACATGCGCTGAAACAGCAATTAAA-CCAGGTCTCACTTATGGATCAA 1723
Query 1733 TTCGC-CTTTCAATACCAAATTACCATAGAAAGGTTTCTAGCTTAAACTTCCCCACTATG 1791
||||| ||| |||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 1724 TTCGCGCTT-CAATACCAAATTACCATAGAAAGGTTTCTACCTTTAACTTCCCCACTATG 1782
Query 1792 CTGAATATTGCAAAATAGCTTGTGAAAGC-ACAAAGCTGACTAGAGTATAGAATTCTAAA 1850
||||||||| | ||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1783 CTGAATATTACTAAATAGCTTGTGAAAGCGA-AAAGCTGACTAGAGTATAGAATTCTAAA 1841
Query 1851 GTAATATGCATACATACAATATATATATCCAGCATA-ATGTGATGGAGGAACCATAGTTA 1909
|||||||||||||||||| ||||||||| ||||||| |||||||||| | ||| ||| ||
Sbjct 1842 GTAATATGCATACATACATTATATATATACAGCATAGATGTGATGGAAGTACCCTAGGTA 1901
Query 1910 GGATTAA-ACGGGAATCTTGAATCTCTTATGGGTTTTGTGTAGACCTAAATGAATTTAAC 1968
||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1902 GGAA-AACACGGGAATCTTGAATCTCTTATGGGTTTTGTGTAGACCTAAATGAATTGAAC 1960
Query 1969 TCTCAGTCTC 1978
||||| ||||
Sbjct 1961 TCTCACTCTC 1970
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75571046080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5