BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G25770.1

Length=743
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg932750 jgi|Araly1|932750|scaffold_400738.1                        640    0.0  


> Ahg932750 jgi|Araly1|932750|scaffold_400738.1
Length=553

 Score =  640 bits (346),  Expect = 0.0
 Identities = 480/543 (88%), Gaps = 15/543 (3%)
 Strand=Plus/Plus

Query  65   ctctctctTTGACATGGAAAAAGCTTCAAGCCCAGAAAAATGGCTAGCCAAAGTATCAGT  124
            ||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||  
Sbjct  8    CTCTCTCTTTGACATGGAAAAAGCTTCAAGCCCTGAAAAATGGCGAGCCAAAGTGTCAAC  67

Query  125  TACGCTCACAAAGGCAAAGCCTGACGAAATCTGGCCTCTCTTCACCGATTTTTTCAATCT  184
            ||||||||||||||||||||||||| |||| |||| ||||||||||||||| ||||| ||
Sbjct  68   TACGCTCACAAAGGCAAAGCCTGACCAAATTTGGCTTCTCTTCACCGATTTCTTCAACCT  127

Query  185  CCACAAGTGGCTTCCAACGCTAGCCACATGTCACGGCGTCCACGGCAACAACGGTGAACA  244
            ||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||| | 
Sbjct  128  CCACAAGTGGCTTCCAACGCTCGTCACGTGTCACGGCGTCCACGGCAACAACGGTGAGCC  187

Query  245  GGGTTGCATCAGATTCTGTTCCGGCTTTTCCATAGGATCCAACGGTGTAGACTCCGCCGC  304
             || |||||||||||||| ||  |||   ||||| |||||||||||||||| || |||||
Sbjct  188  CGGCTGCATCAGATTCTGCTCTAGCTCCGCCATACGATCCAACGGTGTAGAATCTGCCGC  247

Query  305  GAGATGGTCAAAGGAGAAGCTTGTGGCCGTTAATCCTGTTGAACGTGTGATGAGATACGA  364
            | ||||||| ||||| ||||| ||||||||| ||||||| ||||||||||||||||||||
Sbjct  248  GGGATGGTCGAAGGAAAAGCTGGTGGCCGTTGATCCTGTGGAACGTGTGATGAGATACGA  307

Query  365  GATAGTGGAGAGTAACACTGGATTCGAATCCTACGTTTCGACGGTGAAGATATTGCCACG  424
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct  308  GATAGTGGAGAGTAACATTGGATTCGAATCCTACGTTTCGACGGTGAAGATATCGCCACG  367

Query  425  TGGCGAAGATGG-----TTG-TG-T-GA-T--T-GAGTGGAGTTTCACCGTTGATCCTGT  472
            ||| ||||||||     ||| || | |  |  | ||||||||||||||||||||||| ||
Sbjct  368  TGGTGAAGATGGAGACGTTGATGGTTGCGTGATAGAGTGGAGTTTCACCGTTGATCCAGT  427

Query  473  GAGAGGATTGTCGTTAGAAAATTTGGTTAAGAAGTATGAGAAAGCATTAGAGATAATCAC  532
            |||||||||||| |||||  ||||||| | |||||||||||||||| ||||| |||||||
Sbjct  428  GAGAGGATTGTCTTTAGATGATTTGGTGATGAAGTATGAGAAAGCACTAGAGGTAATCAC  487

Query  533  CAAGAACATGGAAGAAGATGCTTTGAGAAGAAGAGAGTCGTCTTCTTAGAAAAATTGTTG  592
            |||||||||||||||||| ||||||| |||||||||||| | | ||||||||  ||||||
Sbjct  488  CAAGAACATGGAAGAAGAGGCTTTGACAAGAAGAGAGTC-T-T-CTTAGAAATGTTGTTG  544

Query  593  ATA  595
            |||
Sbjct  545  ATA  547



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27372254406


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5