BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G25780.1

Length=591
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg481430 jgi|Araly1|481430|fgenesh2_kg.4__490__AT2G25780.1          660    0.0  


> Ahg481430 jgi|Araly1|481430|fgenesh2_kg.4__490__AT2G25780.1
Length=485

 Score =  660 bits (357),  Expect = 0.0
 Identities = 444/485 (92%), Gaps = 10/485 (2%)
 Strand=Plus/Plus

Query  44   ATTCTTCGAAAGGCCTTCTCTGATGTTTCCTTGGAGAGAAAACGAAATATAAGCCAAAAC  103
            ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| 
Sbjct  10   ATTCTTCGAAAGGCCTTCTCTGATGTTTCTTTGGAGAGAAAACGAAATATAAGCGAAAAA  69

Query  104  GACGAGCAAGAACAAGAAGGAGAGGTAGAAGTGAACCAAGTGAAATGTGATTGTTGTGGT  163
            |||||||||||||||||  ||||| |||||||||| ||||||||||||||||||||||||
Sbjct  70   GACGAGCAAGAACAAGACCGAGAGCTAGAAGTGAAGCAAGTGAAATGTGATTGTTGTGGT  129

Query  164  ATAGAAGAAGAATGTACTATGCAATACATAGCCAAAGTCAGAA-ACTTGTATTCAGGCAA  222
            ||||||||||||||||||||||||||||||| |||||| | || ||||||||||||||||
Sbjct  130  ATAGAAGAAGAATGTACTATGCAATACATAGACAAAGTTA-AAGACTTGTATTCAGGCAA  188

Query  223  TTGGGTTTGTGGTCTTTGTGGCGAAGTAGTAACTGAGAGACTTCGGAAAGATCCTCCAAT  282
            |||||||||||||||||||| || ||| || ||||||||| ||||||||||||| || | 
Sbjct  189  TTGGGTTTGTGGTCTTTGTGCCGTAGTGGTCACTGAGAGATTTCGGAAAGATCCCCCTAC  248

Query  283  AGCCGCTGGGATACAAGAAGCCTTTGACTGGCACAAAGGAATTTGTGATGCCTTCAATTC  342
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  249  AGCCACTGGGATACAAGAAGCCTTTGACTGGCACAAAGGAATTTGTGATGCCTTCAATTC  308

Query  343  TACTACAAGGGTGAACCCTAAACTCGACTTCACAAGATCGATGAGAGAGATCGCTAAACG  402
            ||||||||| ||||||||||||||||| ||| || | || ||||||||||||||||||||
Sbjct  309  TACTACAAGAGTGAACCCTAAACTCGATTTCGCACGGTCAATGAGAGAGATCGCTAAACG  368

Query  403  AAGCAGTCAGAACAGGATGATGTCAGACTTTTCGATAGGATCCAAAATTGCTCGAACAAT  462
            |||||||||||| |||||| |  | ||||||||| |||| ||||||||||||||||||||
Sbjct  369  AAGCAGTCAGAATAGGATG-TC-C-GACTTTTCGTTAGGTTCCAAAATTGCTCGAACAAT  425

Query  463  CAGTTGTGATCCAAGGCTCGAGACTTGAGCAATAATGATGTAGACCCAAGCTGTAGTTAT  522
            ||||||||| ||||||||||||||||||  |||  | ||||||||||||||| |||||||
Sbjct  426  CAGTTGTGACCCAAGGCTCGAGACTTGA--AAT--T-ATGTAGACCCAAGCTCTAGTTAT  480

Query  523  TGTTA  527
            | |||
Sbjct  481  TCTTA  485



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21634218963


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5