BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G25780.1 Length=591 Score E Sequences producing significant alignments: (Bits) Value Ahg481430 jgi|Araly1|481430|fgenesh2_kg.4__490__AT2G25780.1 660 0.0 > Ahg481430 jgi|Araly1|481430|fgenesh2_kg.4__490__AT2G25780.1 Length=485 Score = 660 bits (357), Expect = 0.0 Identities = 444/485 (92%), Gaps = 10/485 (2%) Strand=Plus/Plus Query 44 ATTCTTCGAAAGGCCTTCTCTGATGTTTCCTTGGAGAGAAAACGAAATATAAGCCAAAAC 103 ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| Sbjct 10 ATTCTTCGAAAGGCCTTCTCTGATGTTTCTTTGGAGAGAAAACGAAATATAAGCGAAAAA 69 Query 104 GACGAGCAAGAACAAGAAGGAGAGGTAGAAGTGAACCAAGTGAAATGTGATTGTTGTGGT 163 ||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||| Sbjct 70 GACGAGCAAGAACAAGACCGAGAGCTAGAAGTGAAGCAAGTGAAATGTGATTGTTGTGGT 129 Query 164 ATAGAAGAAGAATGTACTATGCAATACATAGCCAAAGTCAGAA-ACTTGTATTCAGGCAA 222 ||||||||||||||||||||||||||||||| |||||| | || |||||||||||||||| Sbjct 130 ATAGAAGAAGAATGTACTATGCAATACATAGACAAAGTTA-AAGACTTGTATTCAGGCAA 188 Query 223 TTGGGTTTGTGGTCTTTGTGGCGAAGTAGTAACTGAGAGACTTCGGAAAGATCCTCCAAT 282 |||||||||||||||||||| || ||| || ||||||||| ||||||||||||| || | Sbjct 189 TTGGGTTTGTGGTCTTTGTGCCGTAGTGGTCACTGAGAGATTTCGGAAAGATCCCCCTAC 248 Query 283 AGCCGCTGGGATACAAGAAGCCTTTGACTGGCACAAAGGAATTTGTGATGCCTTCAATTC 342 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 249 AGCCACTGGGATACAAGAAGCCTTTGACTGGCACAAAGGAATTTGTGATGCCTTCAATTC 308 Query 343 TACTACAAGGGTGAACCCTAAACTCGACTTCACAAGATCGATGAGAGAGATCGCTAAACG 402 ||||||||| ||||||||||||||||| ||| || | || |||||||||||||||||||| Sbjct 309 TACTACAAGAGTGAACCCTAAACTCGATTTCGCACGGTCAATGAGAGAGATCGCTAAACG 368 Query 403 AAGCAGTCAGAACAGGATGATGTCAGACTTTTCGATAGGATCCAAAATTGCTCGAACAAT 462 |||||||||||| |||||| | | ||||||||| |||| |||||||||||||||||||| Sbjct 369 AAGCAGTCAGAATAGGATG-TC-C-GACTTTTCGTTAGGTTCCAAAATTGCTCGAACAAT 425 Query 463 CAGTTGTGATCCAAGGCTCGAGACTTGAGCAATAATGATGTAGACCCAAGCTGTAGTTAT 522 ||||||||| |||||||||||||||||| ||| | ||||||||||||||| ||||||| Sbjct 426 CAGTTGTGACCCAAGGCTCGAGACTTGA--AAT--T-ATGTAGACCCAAGCTCTAGTTAT 480 Query 523 TGTTA 527 | ||| Sbjct 481 TCTTA 485 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21634218963 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5