BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25790.1
Length=3119
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932754 jgi|Araly1|932754|scaffold_400742.1 4263 0.0
> Ahg932754 jgi|Araly1|932754|scaffold_400742.1
Length=2923
Score = 4263 bits (2308), Expect = 0.0
Identities = 2725/2930 (93%), Gaps = 14/2930 (0%)
Strand=Plus/Plus
Query 13 CCAAAGAAACAAAAGCAAACATGTCTACTTCTCATCATCATCATCACCCTCCTTATCTCA 72
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 1 CCAAAGAAACAAAAGCAAACATGTCTACTTCTCATCATCATCATCACGCTCCATATCTCA 60
Query 73 TCACCACATTATTCTTCTTGTTTCTTAACTTCTCCTGCCTCCATGCAAATGAACTCGAGC 132
| || ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 61 TTACAACATTATTCTTCTTGTTTCTTAACTTCTCTTGCCTTCATGCAAATGAACTCGAGC 120
Query 133 TTCTCTTATCATTCAAATCCTCAATTCAAGACCCTCTAAAACACCTCTCCTCTTGGTCTT 192
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 121 TTCTCTTATCATTCAAATCCTCAATTCAAGACCCTCTAAAACACCTCTCTTCTTGGTCCT 180
Query 193 ACTCTTCAACCAATGATGTGTGTCTTTGGAGTGGCGTCGTTTGCAACAACATCTCTCGTG 252
|||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 181 ACTCTTCAACTAATGATGTGTGTCTTTGGACAGGCGTCGTTTGCAACAACTTCTCTCGTG 240
Query 253 TTGTCTCTCTCGATCTCTCCGGCAAGAACATGTCCGGTCAAATCCTCACCGCCGCTACTT 312
||||||||||||||||||||||||||||||| || || ||||||||||| |||||||||
Sbjct 241 TTGTCTCTCTCGATCTCTCCGGCAAGAACATCTCAGGCCAAATCCTCACATCCGCTACTT 300
Query 313 TTCGCCTACCTTTTCTTCAAACTATCAACCTCTCAAACAACAACTTGTCCGGTCCAATAC 372
| || ||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
Sbjct 301 TCCGGCTACCTTTTCTACGAACTATCAACCTCTCAAACAACAACTTGTCCGGTCCAATCC 360
Query 373 CTCACGATATCTTTACCACTTCGTCTCCTTCTCTCCGTTACCTCAACTTAAGCAACAACA 432
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 361 CTCAAGATATCTTTACCACTTCGTCTCCTTCTCTTCGTTACCTCAACTTAAGCAACAACA 420
Query 433 ACTTTTCCGGCTCCATCCCTCGAGGCTTTCTTCCGAACCTCTACACGTTAGATCTTTCCA 492
|||| || ||||| ||| |||||||||||||||| ||||||||||||||||||||||| |
Sbjct 421 ACTTCTCTGGCTCGATCTCTCGAGGCTTTCTTCCAAACCTCTACACGTTAGATCTTTCAA 480
Query 493 ACAACATGTTCACCGGTGAAATCTACAACGACATCGGGGTTTTCTCTAACCTTAGAGTCC 552
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 481 ACAACATGTTCTCCGGTGAAATCTACAACGACATCGGATTTTTCTCTAACCTTAGAATCC 540
Query 553 TTGATCTCGGTGGAAATGTCTTAACCGGCCATGTACCGGGCTATCTTGGAAACCTCTCAA 612
| |||||||| ||||| ||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 541 TCGATCTCGGCGGAAACGTCTTGACCGGCCATGTACCGGCCTATCTTGGAAACCTCTCAA 600
Query 613 GATTAGAGTTCTTAACATTGGCTTCAAACCAGTTAACCGGAGGTGTACCGGTGGAATTAG 672
||||||||||| |||||||||||||||||||||| |||||||||||||| | ||| ||||
Sbjct 601 GATTAGAGTTCCTAACATTGGCTTCAAACCAGTTCACCGGAGGTGTACCAGCGGAGTTAG 660
Query 673 GGAAGATGAAAAACTTGAAATGGATATACTTGGGATACAACAATCTCTCAGGAGAAATCC 732
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 661 GGAAGATGAAAAACTTGAAATGGATATACTTGGGATACAACAATCTCTCCGGAGAAATCC 720
Query 733 CTTACCAAATCGGTGGGTTATCCTCTCTTAACCACCTTGATCTCGTCTACAACAATCTCT 792
|||||||||||||||| ||||||||||| |||||||||||||| || |||||||||||||
Sbjct 721 CTTACCAAATCGGTGGCTTATCCTCTCTCAACCACCTTGATCTTGTGTACAACAATCTCT 780
Query 793 CTGGACCGATACCTCCTTCACTAGGTGACTTGAAGAAGCTTGAGTATATGTTTCTCTATC 852
||||||| ||||||||||||||||| ||||| ||||| |||||||| ||||||||||| |
Sbjct 781 CTGGACCAATACCTCCTTCACTAGGAGACTTAAAGAATCTTGAGTACATGTTTCTCTACC 840
Query 853 AAAACAAGCTCTCCGGTCAGATCCCACCGTCCATCTTCTCCCTCCAAAACCTAATTTCTC 912
|||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||
Sbjct 841 AAAACAAGCTCTCCGGTCCGATCCCACCGTCCATCTTCTCCCTCCAAAACCTCATCTCTC 900
Query 913 TCGACTTTAGCGATAACTCGCTCTCGGGAGAGATCCCTGAGCTCGTGGCTCAGATGCAAA 972
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 901 TCGACTTTAGCGATAACTCGCTCTCGGGAGAGATCCCTGAGCTCTTGGCTCAGATGCAGA 960
Query 973 GCTTGGAGATTCTCCATCTCTTCTCTAATAACTTAACAGGAAAAATTCCAGAAGGAGTAA 1032
||||||||||||||| |||||||| ||||||||||| |||| ||||||| |||||||||
Sbjct 961 CCTTGGAGATTCTCCACCTCTTCTCCAATAACTTAACCGGAACAATTCCAAAAGGAGTAA 1020
Query 1033 CTTCTTTGCCACGTCTAAAAGTTCTTCAGCTTTGGTCAAACAGATTTTCCGGTGGAATTC 1092
|||||||||||||||| ||||||||||||| ||||| |||||||| || || |||||||
Sbjct 1021 CTTCTTTGCCACGTCTTCAAGTTCTTCAGCTCTGGTCTAACAGATTATCTGGCGGAATTC 1080
Query 1093 CGGCAAATCTTGGGAAACATAACAATCTCACTGTTCTTGATCTTTCTACCAACAATCTCA 1152
|||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1081 CGGCGAATCTTGGGAAACATAACAACCTTACTGTTCTTGATCTTTCTACCAACAATCTCA 1140
Query 1153 CCGGAAAACTCCCTGACACTCTTTGTGATTCTGGCCATCTCACTAAGCTCATCCTCTTCT 1212
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1141 CCGGAAAACTCCCTGACACTCTTTGTGACTCTGGCCATCTCACTAAGCTCATCCTCTTCT 1200
Query 1213 CTAACTCTCTAGACAGCCAAATCCCACCGAGTTTGGGCATGTG-TCAGAGCTTAGAACGC 1271
||||||||||| |||||||||||||| ||||||||||| ||| || ||||||||||||
Sbjct 1201 CTAACTCTCTACACAGCCAAATCCCAACGAGTTTGGGCGCGTGCTC-GAGCTTAGAACGT 1259
Query 1272 GTGAGGCTTCA-AAACAATGGCTTTTCAGGCAAGTTACCTCGAGGTTTCACCAAGTTGCA 1330
||||||||||| ||| |||||||| |||||| | |||||||||||||||||| |||| ||
Sbjct 1260 GTGAGGCTTCAGAAA-AATGGCTTCTCAGGCGATTTACCTCGAGGTTTCACCGAGTTACA 1318
Query 1331 ACTCGTTAACTTTTTGGACTTATCCAACAACAACCTCCAAGGTAACATCAACACATGGGA 1390
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 1319 ACTCGTTAACTTTTTGGACTTATCAAACAACAACCTCCAAGGTAACATCAGCACATGGGA 1378
Query 1391 CATGCCACAACTTGAGATGTTAGACCTCAG-TGTGAACAAATTCTTCGGTGAATTACCGG 1449
||||||||||||||||||| |||||||||| | |||||| |||| |||||||||||| |
Sbjct 1379 CATGCCACAACTTGAGATGCTAGACCTCAGCCG-GAACAACTTCTCCGGTGAATTACCTG 1437
Query 1450 ATTTTTCTAGAAGCAAAAGACTCAAGAAGCTCGATTTATCACGGAACAAAATCTCTGGAG 1509
|| |||| ||||||||||||||||||||||||||||||||| | |||| ||||||||||
Sbjct 1438 ATCTTTCGAGAAGCAAAAGACTCAAGAAGCTCGATTTATCAAGAAACAGAATCTCTGGAA 1497
Query 1510 TGGTTCCACAAGGGCTCATGACGTTTCCGGAAATAATGGATTTGGATTTAAGTGAGAACG 1569
|| |||| | | |||||||| | ||||||||| | ||||| ||||||||||||||||||
Sbjct 1498 TGTTTCCGCTACGGCTCATGGCCTTTCCGGAACTTATGGACATGGATTTAAGTGAGAACG 1557
Query 1570 AAATCACTGGAGTGATCCCAAGGGAGTTGTCTTCTTGCAAAAATCTAGTGAATCTTGACT 1629
| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1558 AGATCACTGGAGTGATCCCAAGTGAGTTGTCTTCTTGCAAGAATCTAGTGAATCTTGACT 1617
Query 1630 TGAGCCACAACAATTTTACCGGAGAGATCCCTTCGAGTTTCGCAGAATTCCAAGTTCTCA 1689
|||||||||||||| | ||||| |||||||||| ||||||| ||||||||| ||||||||
Sbjct 1618 TGAGCCACAACAATCTCACCGGGGAGATCCCTTTGAGTTTCTCAGAATTCCCAGTTCTCA 1677
Query 1690 GCGATCTTGATTTGTCATGCAACCAATTATCAGGCGAGATTCCGAAGAATCTAGGAAACA 1749
|||||||||||||||| ||||||| |||||| ||||||||||||||||||||||| ||||
Sbjct 1678 GCGATCTTGATTTGTCGTGCAACCGATTATCTGGCGAGATTCCGAAGAATCTAGGGAACA 1737
Query 1750 TTGAGTCTCTTGTTCAAGTCAACATCTCTCATAATCTTCTTCACGGAAGCTTACCTTTC- 1808
| |||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1738 TCGAGTCTCTCGTTCAAGTCAACATCTCTCATAATCTTCTTCACGGAAGCTTACC-TCCA 1796
Query 1809 ACCGGAGCTTTTCTTGCCATAAACGCAACAGCAGTTGAGGGTAACATCGATCTTTGTAGC 1868
||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||| |||
Sbjct 1797 ACCGGAGCTTTCCTTGCCATAAACGCAACAGCAGTTGCGGGTAATATCGATCTTTGCAGC 1856
Query 1869 GAAAATTCCGCTAGCGGTTTACGTCCTTGCAAGGTTGTAAGAAAGAGAAGTACGAAGAGT 1928
| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 1857 GCAAATTCCGCTAGCGGTTTACATCCTTGCAAGGTTGTAAGAAAGAGAAGTACAAAGAGT 1916
Query 1929 TGGTGGTTAATCATCACTTCAACCTTTGCAGCTTTCTTGGCTGTCCTAGTCTCTGGTTTC 1988
|||||||| ||||||||||||||| ||| |||||||||||||||||| ||||||||||||
Sbjct 1917 TGGTGGTTTATCATCACTTCAACCGTTGTAGCTTTCTTGGCTGTCCTTGTCTCTGGTTTC 1976
Query 1989 TTTATCGTTCTCGTCTTTCAAAGAACGCATAACGTTTTGGAGGTCAAGAAAGTGGAACAA 2048
||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1977 TTTATCGCTCTCGTCTTTCAAAAAACGCGTAACGTTTTGGAGGTCAAGAAAGTGGAACAA 2036
Query 2049 GAAGATGGTACAAAGTGGGAAACTCAATTCTTCGATTCAAAATTCATGAAATCGTTTACG 2108
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2037 GAAGATGGTACAAAGTGGGAAACTCAATTCTTCGATTCAAGATTCATGAAATCGTTTACG 2096
Query 2109 GTGAACACAATTCTATCGTCTCTTAAGGACCAAAACGTTCTTGTGGATAAAAACGGCGTG 2168
|||||| | ||| ||||||||||||| || |||||||||||||||||||||| ||||||
Sbjct 2097 GTGAACGCGATTGTATCGTCTCTTAATGAACAAAACGTTCTTGTGGATAAAACCGGCGT- 2155
Query 2169 C-ATTTCGTTGTTAAGGAGGTCAAGAAGTATGATTCTCTTCCCGAGATGATATCCGATAT 2227
| | |||||||| ||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 2156 CAAGTTCGTTGTAAAGGAGGTCAAGAAGTATGATTCTCTTCCCGAGATGATATCTGACAT 2215
Query 2228 GAGGAAACTTTCTGACCACAAAAACATTCTTAAGATAGTTGCTACGTGCCGGTCGGAGAC 2287
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2216 GAGGAAACTTTCTGAGCACAAAAACATTCTTAAGATAGTTGCTACGTGCCGGTCGGAAAA 2275
Query 2288 TGTGGCGTACTTGATACATGAGGACGTCGAAGGGAAACGGCTGAGCCAGGTTTT-AAGTG 2346
| ||| ||||||||||| ||||||||||||||||||||||| |||||| |||| || ||
Sbjct 2276 AGAGGCCTACTTGATACACGAGGACGTCGAAGGGAAACGGCTTAGCCAGATTTTGAA-TG 2334
Query 2347 GTTTGAGTTGGGAGAGACGGAGGAAGATTATGAAGGGAATCGTCGAAGCTCTTCGGTTTT 2406
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2335 GTTTGAGTTGGGAGAGACGGAGGAAGATTATGAAGGGAATCGTAGAAGCTCTTCGGTTTT 2394
Query 2407 TACATTGCCGGTGTTCTCCAGCTGTTGTTGCCGGTAATTTATCGCCGGAGAATATTGTCA 2466
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2395 TACATTGCCGGTGTTCTCCAGCGGTTGTTGCCGGTAATTTATCGCCGGAGAATATTGTCA 2454
Query 2467 TCGACGTCACCGATGAACCAAGGCTTTGTCTCGGTCTTCCGGGCTTACTTTGCATGGA-T 2525
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2455 TCGACGTCAAGGATCAACCAAGGCTTTGTCTCGGTCTTCCGGGCTTACTTTGCATGGACT 2514
Query 2526 GCTGCTTACATGGCCCCAGAAACGAGAGAGCACAAGGAGATGACAAGTAAAAGTGACATC 2585
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2515 -CTGCTTACATGGCCCCAGAAACGAGAGAGCACAAGGAGATGACAAGTAAAAGTGACATC 2573
Query 2586 TATGGTTTTGGAATCCTCCTCCTTCATCTCCTCACCGGTAAATGTTCCTCCAGTAATGAG 2645
|||||||||||||||||||||||||||||||||||||||||| |||||| || |||||
Sbjct 2574 TATGGTTTTGGAATCCTCCTCCTTCATCTCCTCACCGGTAAAAACTCCTCCGGTGATGAG 2633
Query 2646 GACATCGAATCTGGAGTTAACGGAAGTTTGGTCAAGTGGGCTAGATATTCGTATTCGAAT 2705
||||| | ||||| ||||||||||||||| ||||| |||||||||||||| |||||||||
Sbjct 2634 GACATAGCATCTGAAGTTAACGGAAGTTTAGTCAACTGGGCTAGATATTCATATTCGAAT 2693
Query 2706 TGCCATATCGACACGTGGATCGACTCATCCATTGACACATCAGTGCATCAGCGCGAGATT 2765
| |||||||||||||||||||||||||||||| |||| ||||||||| |||| ||||||
Sbjct 2694 TTCCATATCGACACGTGGATCGACTCATCCATCGACATGTCAGTGCATAAGCGTGAGATT 2753
Query 2766 GTCCATGTTATGAACTTGGCTTTGAAATGTACGGCCATTGATCCGCAAGAGAGGCCATGC 2825
|||||||| |||||||| |||||||| ||||||||||||||||||||||||||||| |||
Sbjct 2754 GTCCATGTCATGAACTTAGCTTTGAACTGTACGGCCATTGATCCGCAAGAGAGGCCTTGC 2813
Query 2826 ACCAATAACGTGTTACAAGCATTAGAGTCTACCTCATCGTCAAGTTCTTCTTGCACTACT 2885
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2814 ACCAAGAACGTGTTACAAGCATTAGAGTCTACCTCATCCTCAAGTTCTTCTTGCACTACT 2873
Query 2886 TATTTGTCAAAGATACTATCGTTGGCCTGACAATTCTGGCTTCGTTTGAC 2935
||||| |||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 2874 TATTTTTCAAAGATACCATCGTTGGCCTGACAATTTTGGCTTCGTTTGAC 2923
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117813127785
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5