BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25800.1
Length=3189
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481432 jgi|Araly1|481432|fgenesh2_kg.4__492__AT2G25800.1 4909 0.0
> Ahg481432 jgi|Araly1|481432|fgenesh2_kg.4__492__AT2G25800.1
Length=3211
Score = 4909 bits (2658), Expect = 0.0
Identities = 3041/3220 (94%), Gaps = 50/3220 (2%)
Strand=Plus/Plus
Query 11 AATGGCTCATCTCTTCAGGGAGCTGTCTCTGGGCCACTCCAAGAGAGAGTCTACGCCGCC 70
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 AATGGCTCATCTCTTCAGAGAGCTGTCTCTGGGTCACTCCAAGAGAGAGTCTACGCCGCC 60
Query 71 GCCGCCGTCACATTCGGCGACTTCACGTTCTTCTTCAATGTCTTCCGATCTACCTCCATC 130
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 61 GCCGCCGTCACAATCGGCGACTTCACGCTCTTCTTCAATGTCTTCCGATCTACCTCCATC 120
Query 131 ACCACTCGGACAACTCGCTGTCCAACTTTCCGATTCCGATCTCCGTCTCACTGCTTACGA 190
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCCACTCGGACAACTCGCTGTTCAACTTTCCGATTCCGATCTCCGTCTCACTGCTTACGA 180
Query 191 GATCTTCGTCGCCGCATGTCGTAGCGCCACCGGTAAACCTCTCTCATCGGCTGTTTCAGT 250
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 181 GATCTTCGTCGCCGCATGTCGTAGCGCCACCGGAAAACCTCTCTCATCGGCTGTTTCAGT 240
Query 251 CGCTGTTTTGAATCAGGATTCTCCCAATGGCTCTCCTGCTTCGCCGGCGATTCAGCGTTC 310
|||||||| ||||| |||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 241 CGCTGTTTCGAATCCGGATTCTCCCAATGGCTCACCTGCTTCGCCAGCGATTCAGCGTTC 300
Query 311 TCTGACCTCAACCGCCGCTAGTAAAATGAAGAAAGCTTTGGGGTTAAGGTCGTCTTCTTC 370
|||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||
Sbjct 301 TCTGACCTCAACCGCCGCTAGTAAGATGAAGAAGGCTTTGGGGTTGAGGTCGTCTTCTTC 360
Query 371 GCTTTCACCTGGATCTAATAAGA------GTTC----T--GGTTCTGCTTCGGGTTCTAA 418
||||||||||||||||||||||| |||| | ||||||||||||||||| ||
Sbjct 361 GCTTTCACCTGGATCTAATAAGAGTCCTGGTTCGGGTTCGGGTTCTGCTTCGGGTTCGAA 420
Query 419 TGGTAAGTCGAAACGTCCTACTACTGTCGGTGAGCTTATGCGGATCCAAATGCGAGTATC 478
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TGGTAAGTCGAAGCGTCCTACTACTGTCGGTGAGCTTATGCGGATCCAAATGCGAGTATC 480
Query 479 GGAGGCTGTCGATTCTCGTGTTCGTAGAGCTTTTCTTAGAATCGCTGCTTCACAGGTTGG 538
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 481 GGAGGCTGTTGATTCTCGTGTTCGTAGAGCTTTTCTTAGAATCGCTGCTAGTCAGGTTGG 540
Query 539 AAGGAAGATTGAGTCAGTAGTTCTTCCTTTAGAGTTGTTACAGCAGCTAAAGTCTTCTGA 598
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 541 AAGGAAGATTGAGTCAGTGGTTCTTCCTTTAGAATTGTTACAGCAGCTAAAGTCTTCTGA 600
Query 599 TTTTACGGATCAGCAAGAATATGATGCTTGGCTGAAGAGATCATTGAAGGTTCTTGAGGC 658
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 601 TTTTACGGATCAGCAAGAATATGATGCTTGGCTTAAGAGATCATTGAAGGTTCTTGAGGC 660
Query 659 AGGTCTTTTGTTGCATCCTCGTGTACCTCTTGATAAGACGAATAGTTCTCAACGACTGCG 718
|||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 661 TGGTCTTCTGTTGCATCCTCGTGTACCTCTTGATAAGACGAATAGTTCTCAGCGATTGCG 720
Query 719 ACAGATTATTCATGGTGCTTTAGATC-GGCCTTTGGAGACTGGAAGGAATAATGAGCAAA 777
||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||
Sbjct 721 TCAGATTATTCATGGTGCTTTAGA-CAGGCCTTTGGAGACTGGAAGGAACAATGAGCAAA 779
Query 778 TGCAAAGTCTTAGATCAGCGGTCATGTCTCTTGCAACTAGATCTGATGGGTCTTTCTCTG 837
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TGCAAAGTCTTCGATCAGCGGTCATGTCTCTTGCAACTAGATCTGATGGGTCTTTCTCTG 839
Query 838 ATTCTTGTCACTGGGCTGATGGATCTCCGTTTAATCTCAGGCTTTATGAATTGCTTTTAG 897
|||| ||||| ||||||||||||||||| |||||||||||||| |||||| |||||||||
Sbjct 840 ATTCCTGTCATTGGGCTGATGGATCTCCATTTAATCTCAGGCTCTATGAACTGCTTTTAG 899
Query 898 AAGCGTGTTTTGATTCTAATGATGCGACGTCCATGGTTGAGGAAGTTGACGACCTAATGG 957
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct 900 AAGCGTGTTTTGATTCTAATGACGCGACGTCCATGGTTGAGGAAGTTGATGACCTTATGG 959
Query 958 AACATATAAAGAAGACGTGGGTAATTCTTGGAATCAATCAAATGCTGCATAACCTCTGTT 1017
|||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 960 AACACATAAAGAAGACGTGGGTAATTCTTGGAATCAACCAAATGCTTCATAACCTCTGTT 1019
Query 1018 TTACGTGGCTTTTGTTTAGTCGTTATGTTGTTACTGGACAAGTTGAGATGGACCTGCTTC 1077
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1020 TTACGTGGATTTTGTTTAGTCGCTATGTTGTTACTGGACAAGTTGAGATGGACCTGCTTC 1079
Query 1078 ATGCTTGTGATTCTCAACTGGCAGAAGTTGCTAAAGATGCAAAGACAACAAAGGATCCTG 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 ATGCTTGTGATTCTCAACTGGCAGAAGTTGCTAAAGATGCAAAGACAACAAAGGATCCTG 1139
Query 1138 AATACTCCCAGGTTTTAAGTTCTACACTGAGTGCTATATTAGGATGGGCAGAGAAAAGGC 1197
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1140 AATACTCCCAAGTTTTAAGTTCTACACTGAGTGCTATATTAGGTTGGGCAGAGAAAAGGC 1199
Query 1198 TCCTTGCATACCATGACACTTTTGACCGAGGAAATATTCATACCATGGAGGGAATTGTTT 1257
|||| ||||||||||| || ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1200 TCCTGGCATACCATGATACCTTTGACCGAGGTAATATTCATACCATGGAGGGAATTGTTT 1259
Query 1258 CTTTGGGTGTATCAGCTGCCAGGATATTAGTTGAAGATATATCTAACGAGTACCGTAGAA 1317
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 CTTTGGGTGTATCAGCAGCCAGGATATTAGTTGAAGATATATCTAACGAGTACCGTAGAA 1319
Query 1318 GAAGGAAAGGAGAAGTTGATGTAGCTCGTACCAGGATTGAGACGTACATCAGGTCCTCAC 1377
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1320 GAAGGAAAGGAGAAGTTGATGTAGCTCGTACCAGGATTGAGACATACATCAGGTCCTCAC 1379
Query 1378 TACGAACTTCTTTT--GC--GC----A---G----AGAATGGAGAAAGCAGATTCAAGCC 1422
|||||||||||||| || || | | |||||||||||||||||||||||||
Sbjct 1380 TACGAACTTCTTTTGCGCAGGCAAGTATTTGTATTAGAATGGAGAAAGCAGATTCAAGCC 1439
Query 1423 GGAGAGCATCTAGGAACCAGAAAAATCCTCTTCCTGTTCTAGCCATCCTTGCTAAGGACA 1482
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1440 GGAGAGCATCTAGAAACCAGAAAAATCCTCTTCCTGTTCTTGCCATCCTTGCTAAGGACA 1499
Query 1483 TTGGTGAGCTAGCTATTCAGGAAAAGCGGATGTTCAGTCCAATATTGAAGAGATGGCATC 1542
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 TTGGTGAGCTAGCTGTTCAGGAAAAGCGGATGTTCAGTCCAATATTGAAGAGATGGCATC 1559
Query 1543 CGTTTGCTGCAGGGGTTGCTGTGGCGACCCTTCATGTTTGTTACGGAAATGAGATTAAAC 1602
| ||||||||||||||||||||||| ||||| || |||||||| ||||||||||||||||
Sbjct 1560 CATTTGCTGCAGGGGTTGCTGTGGCTACCCTCCACGTTTGTTATGGAAATGAGATTAAAC 1619
Query 1603 AGTTTATAGCCGGAATATCTGAATTGACACCTGATGCTGTCCAGATACTAAGAGCTGCAG 1662
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1620 AGTTTATATCCGGAATATCTGAATTGACACCCGATGCTGTCCAGATACTAAGAGCTGCAG 1679
Query 1663 ATAAGCTAGAAAAGGATCTGGTGCAAATCGCAGTAGAGGATTCTGTTGACAGTGATGATG 1722
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1680 ATAAGCTAGAAAAGGATCTGGTTCAAATCGCAGTAGAGGATTCTGTTGACAGTGATGATG 1739
Query 1723 GTGGCAAAGCAATTATCCGTGAAATGCCTCCCTTCGAAGCTGAGACCGTAATTGCTAATT 1782
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1740 GTGGCAAAGCAATTATCCGTGAAATGCCTCCCTTCGAAGCTGAGACGGTTATTGCTAATT 1799
Query 1783 TGGTCAAAGACTGGATAAAGGCAAGAATAGACAGACTTAAGGAATGGGTTGACAGGAATT 1842
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1800 TGGTCAAAGACTGGATCAAGGCAAGAATAGACAGACTTAAGGAATGGGTTGACAGGAATT 1859
Query 1843 TGCAGCAAGAGGTTTGGAAACCCCTGGAGAACCTAGAAGGAGGATATGCACAGTCTGCTG 1902
|||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||
Sbjct 1860 TGCAGCAAGAGGTTTGGAAACCTCTGGAGAACCAAGAAGGAGGATATGCACAATCTGCTG 1919
Query 1903 CCGAAGTGTTGCGGATTACTGATGAAACTTTGGAAGCtttttttCAGCTTCCCATACCTA 1962
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1920 CCGAAGTGTTGCGGATTACTGATGAAACTTTGGAAGCGTTTTTTCAGCTTCCCATACCCA 1979
Query 1963 TGCATCCTGCTGTATTACCTGATTTAATTATTGGTTTAGACAAATATCTTCAGTATTATG 2022
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1980 TGCATCCTGCTGTATTACCTGATTTAATCATTGGTTTAGACAAATATCTTCAGTATTATG 2039
Query 2023 TCTCAAAGGCGAAATCTGGCTGCGGCTCTCGGACTACGTACATGCCTACAATGCCTGCAC 2082
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2040 TCTCAAAGGCAAAATCTGGCTGCGGCTCTCGGACTACGTACATGCCCACAATGCCTGCAC 2099
Query 2083 TCACCAGATGTACAACGGGATCAAAATTCCAATGGAAGAAGAAAGAAAAGACACCTACCA 2142
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 2100 TCACCCGATGTACAACGGAATCAAAATTCCAATGGAAGAAGAAAGAAAAGACACCTATCT 2159
Query 2143 CTCAGAAGAGAGAATCTCAGGTTTCGGTTATGAACGGTGAGAATTCTTTTGGGGTCACGC 2202
||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2160 CTCAGAAGAGAGACGCTCAGGTTTCGGTTATGAACGGTGAGAATTCCTTTGGGGTCACGC 2219
Query 2203 AAATATGTGTCAGAATAAACAGCTTGCACAAAATCCGCAGTGAGCTTGATGTTGTGGAAA 2262
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2220 AGATATGTGTCAGAATAAACAGCTTGCACAAAATCCGCAGTGAGCTCGATGTTGTGGAAA 2279
Query 2263 AAAGAGTGATCACACATTTGAGGAACTGTGAGTCAGCTCACACCGATGACTTTTCCAACG 2322
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2280 AAAGAGTGATCACACATTTGAGGAACTGTGAGTCAGCTCACACTGATGACTTTTCCAACG 2339
Query 2323 GCTTAGaaaaaaaGTTTGAGCTCACACCAGCGGCTTGCATAGAAGGCGTTCAACAGCTTT 2382
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 2340 GCTTAGAAAAAAAGTTTGAGCTCACACCAGCGGCTTGCATCGAAGGTGTTCAACAGCTTT 2399
Query 2383 CTGAGTCTCTGGCTTATAAGGTCGTCTTCCACGACCTAAGCCACACGTTATGGGACGGGT 2442
|||||||| ||||||| || ||||| |||||||||||||||||||| |||||||| ||||
Sbjct 2400 CTGAGTCTTTGGCTTACAAAGTCGTTTTCCACGACCTAAGCCACACATTATGGGATGGGT 2459
Query 2443 TATACATCGGAGACCTCTCTTCCTCTAGAATCGATCCTTTCCTCAAGGAACTCGAACAGA 2502
|||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 2460 TATACATCGGTGACCTCTCTTCCTCTAGAATAGATCCTTTCCTCAAGGAGCTCGAACAGA 2519
Query 2503 ATTTGACAGTCATAGCAGAGACAGTACATGAAAGAGTTCGAACACGCATCATCACCGATA 2562
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 2520 ATTTGACAGTCATAGCAGAGACAGTACATGAAAGAGTCCGAACACGCATCATAACCGATA 2579
Query 2563 TTATGAGAGCCTCTTTAGATGGCTTCTTACTTGTCCTGCTTGCCGGAGGACCCTCTAGGG 2622
|||||||| ||||||| ||||||||||||||||||||||| || ||||||||||||||||
Sbjct 2580 TTATGAGAACCTCTTTCGATGGCTTCTTACTTGTCCTGCTCGCTGGAGGACCCTCTAGGG 2639
Query 2623 CGTTCACAAGACAAGACTCTCAGATAATGGAAGAAGATTTCAAATCAATGAAAGATATGT 2682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2640 CGTTCACAAGACAAGACTCTCAGATAATGGAAGAAGATTTCAAATCAATGAAAGATATGT 2699
Query 2683 TCTGGGCTAACGGAGACGGTCTAGCCATGGACCTGATCGATAAATTCTCAACCACTGTCA 2742
||||||| |||||||| |||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 2700 TCTGGGCGAACGGAGATGGTCTAGCCATGGACCTGATCGATAAATTCTCGACCACGGTCA 2759
Query 2743 GAGGCGTGCTTCCTCTGTTCAGTACAGATACAGACAGTTTAATAGAGAGGTTCAAGGGAA 2802
|||| |||||||||||||| || ||||| || ||||||||||||||||||||||||||||
Sbjct 2760 GAGGTGTGCTTCCTCTGTTTAGCACAGACACGGACAGTTTAATAGAGAGGTTCAAGGGAA 2819
Query 2803 CGACCCTCGAAGCATATGGTTCTTCAGCTAAGTCGAGGCTTCCGTTGCCTCCAACATCAG 2862
|||| |||||||| || || ||||||||||||||||||||||||||||||||||||||||
Sbjct 2820 CGACGCTCGAAGCTTACGGGTCTTCAGCTAAGTCGAGGCTTCCGTTGCCTCCAACATCAG 2879
Query 2863 GCCAGTGGAATGGCATGGAGCCAAACACACTCTTACGTGTTTTGTGTTACCGTAACGACG 2922
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
Sbjct 2880 GCCAGTGGAATGGCATGGAGCCAAACACGCTCTTACGTGTTTTATGTTACCGTAACGATG 2939
Query 2923 AATCTGCCACGAGGTTTCTCAAGAAGACATATAATCTACCTAAGAAGCTTTAGTAAACTT 2982
||||||||||||||||||||||||| ||||||||||| || |||||||| |||| ||||
Sbjct 2940 AATCTGCCACGAGGTTTCTCAAGAAAACATATAATCTGCCAAAGAAGCTCTAGTGGACTT 2999
Query 2983 ACGG-CTACTACTGCAACGTATAATAACCTCACAAGATGAAGAGTGTGTGTTCCACTTGC 3041
| || ||||||||||||||| |||||||||||||||| ||||||||||| | ||||||||
Sbjct 3000 A-GGACTACTACTGCAACGTTTAATAACCTCACAAGAAGAAGAGTGTGT-T-CCACTTGC 3056
Query 3042 AGGAGGGAGCCTCCGAGATTTGTATAGTGAGTTTCAtttttttt-gttttatggtttttt 3100
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 3057 AGGAGGGAGCATCCGAGATTTGTATAGTGAGTTTCATTTTTTTTTGTTTTATGGTTTTTT 3116
Query 3101 tttCTAATACATTCCTATACGTACT-ATATAATT---C-ATTTAT--ATCT--TTTGTTA 3151
| |||||||||||||||| | ||||| || | ||| || |||| |||||||
Sbjct 3117 G----A-TACATTCCTATACGTATTTATATATTTTTTCTATTCATTTATCTCGTTTGTTA 3171
Query 3152 TTATTATTTTTGAAG-T-ATACAAATAACTTATTCGATGT 3189
||||||||||||||| | ||||||||||||||||||||||
Sbjct 3172 TTATTATTTTTGAAGATTATACAAATAACTTATTCGATGT 3211
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 120479444935
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5