BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25810.1
Length=1166
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932757 jgi|Araly1|932757|scaffold_400745.1 1164 0.0
> Ahg932757 jgi|Araly1|932757|scaffold_400745.1
Length=791
Score = 1164 bits (630), Expect = 0.0
Identities = 739/792 (93%), Gaps = 5/792 (1%)
Strand=Plus/Plus
Query 134 TTAAATTCATTCAAAAGCCATGAAGAAGATCGAGTTAGGGCACCATAGCGAAGCGGCTAA 193
||||| |||||| ||||||||||||||||| |||||||| |||||||| || ||||||||
Sbjct 3 TTAAACTCATTCTAAAGCCATGAAGAAGATTGAGTTAGGTCACCATAGTGAGGCGGCTAA 62
Query 194 ACC-GGACTGCATTAAAGCCCTCATTGTCGAATTCATCACTACCTTTCTCTTTGTCTTCG 252
|| || ||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 63 GCCAGG-CTGCATTAAAGCCCTTATTGTCGAATTCATCACCACCTTTCTCTTTGTCTTCG 121
Query 253 CTGGTGTTGGATCTGCCATGGCCACTGACAGTTTAGTCGGAAACACATTGGTGGGACTTT 312
| || |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 122 CGGGCGTTGGATCCGCCATGGCCACCGACAGTTTAGTCGGAAACACATTGGTGGGACTTT 181
Query 313 TCGCGGTCGCGGTGGCTCATGCATTCGTTGTGGCGGTAATGATATCTGCGGGCCATATCT 372
|||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 182 TCGCGGTCGCTGTGGCTCATGCATTAGTTGTGGCGGTAATGATATCTGCCGGCCATATCT 241
Query 373 CCGGTGGCCACCTCAACCCCGCCGTCACCCTCGGTCTACTCTTGGGTGGCCACATCAGCG 432
|||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||
Sbjct 242 CCGGTGGCCACCTCAACCCCGCGGTCACCCTCGGTCTACTTTTGGGTGGCCATATCAGCG 301
Query 433 TATTCCGTGCATTCCTTTATTGGATTGATCAATTGTTGGCCTCCTCCGCAGCATGCTTCC 492
| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 TCTTCCGCGCATTCCTCTATTGGATTGATCAATTGTTGGCCTCCTCCGCAGCATGCTTCC 361
Query 493 TCCTCAGTTACCTCACCGGAGGAATGGGAACTCCGGTTCACACATTGGCAAGTGGAGTGA 552
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 362 TCCTCAGTTACCTCACCGGAGGAATGGCAACTCCGGTTCACACATTGGCAATTGGAGTGA 421
Query 553 GTTACACGCAAGGGATCATATGGGAGATCATCTTAACATTTTCACTTCTCTTCACTGTCT 612
||||||| |||||||||||||||||||| ||||||||||| |||||||||||||| ||||
Sbjct 422 GTTACACTCAAGGGATCATATGGGAGATAATCTTAACATTCTCACTTCTCTTCACAGTCT 481
Query 613 ACGCCACTATTGTGGATCCGAAGAAAGGATCCCTTGATGGGTTCGGCCCACTTCTCACAG 672
|||||||||| |||||||| |||||||||||||||||||| | || |||||||||||||
Sbjct 482 ACGCCACTATGGTGGATCCCAAGAAAGGATCCCTTGATGGACTAGGTCCACTTCTCACAG 541
Query 673 GATTTGTCGTTGGAGCCAACATCCTTGCAGGAGGTGCCTTTTCTGGCGCCTCCATGAACC 732
|||| |||||||||||||||||||| ||||||||||||||||| || ||||| |||||||
Sbjct 542 GATTCGTCGTTGGAGCCAACATCCTAGCAGGAGGTGCCTTTTCGGGTGCCTCTATGAACC 601
Query 733 CCGCCCGGTCTTTTGGTCCCGCTTTGGTCTCTGGAAACTGGACTGACCATTGGGTATATT 792
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 602 CCGCCCGGTCTTTTGGTCCGGCTTTGGTCTCTGGAAATTGGACTGACCATTGGGTATATT 661
Query 793 GGGTTGGACCGTTGATCGGTGGTGGACTCGCCGGTTTCATCTACGAGAATGTCCTCATTG 852
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 662 GGGTTGGACCGTTGATTGGTGGTGGACTCGCCGGTTTCATCTACGAGAACGTCCTCATTG 721
Query 853 ACCGTCCACATGTCCCAGTCGCTGACGACGAGCAACCATTGTTGAATTAAATGTGTTTGA 912
||||||||||||||||||| |||||||| ||||||||||| ||| |||||||||||| ||
Sbjct 722 ACCGTCCACATGTCCCAGTTGCTGACGATGAGCAACCATTATTGGATTAAATGTGTT-GA 780
Query 913 A-ACTGTGCTAT 923
| | |||| |||
Sbjct 781 ATA-TGTGTTAT 791
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43498248297
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5