BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G25810.1 Length=1166 Score E Sequences producing significant alignments: (Bits) Value Ahg932757 jgi|Araly1|932757|scaffold_400745.1 1164 0.0 > Ahg932757 jgi|Araly1|932757|scaffold_400745.1 Length=791 Score = 1164 bits (630), Expect = 0.0 Identities = 739/792 (93%), Gaps = 5/792 (1%) Strand=Plus/Plus Query 134 TTAAATTCATTCAAAAGCCATGAAGAAGATCGAGTTAGGGCACCATAGCGAAGCGGCTAA 193 ||||| |||||| ||||||||||||||||| |||||||| |||||||| || |||||||| Sbjct 3 TTAAACTCATTCTAAAGCCATGAAGAAGATTGAGTTAGGTCACCATAGTGAGGCGGCTAA 62 Query 194 ACC-GGACTGCATTAAAGCCCTCATTGTCGAATTCATCACTACCTTTCTCTTTGTCTTCG 252 || || ||||||||||||||| ||||||||||||||||| ||||||||||||||||||| Sbjct 63 GCCAGG-CTGCATTAAAGCCCTTATTGTCGAATTCATCACCACCTTTCTCTTTGTCTTCG 121 Query 253 CTGGTGTTGGATCTGCCATGGCCACTGACAGTTTAGTCGGAAACACATTGGTGGGACTTT 312 | || |||||||| ||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 122 CGGGCGTTGGATCCGCCATGGCCACCGACAGTTTAGTCGGAAACACATTGGTGGGACTTT 181 Query 313 TCGCGGTCGCGGTGGCTCATGCATTCGTTGTGGCGGTAATGATATCTGCGGGCCATATCT 372 |||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct 182 TCGCGGTCGCTGTGGCTCATGCATTAGTTGTGGCGGTAATGATATCTGCCGGCCATATCT 241 Query 373 CCGGTGGCCACCTCAACCCCGCCGTCACCCTCGGTCTACTCTTGGGTGGCCACATCAGCG 432 |||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| Sbjct 242 CCGGTGGCCACCTCAACCCCGCGGTCACCCTCGGTCTACTTTTGGGTGGCCATATCAGCG 301 Query 433 TATTCCGTGCATTCCTTTATTGGATTGATCAATTGTTGGCCTCCTCCGCAGCATGCTTCC 492 | ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 302 TCTTCCGCGCATTCCTCTATTGGATTGATCAATTGTTGGCCTCCTCCGCAGCATGCTTCC 361 Query 493 TCCTCAGTTACCTCACCGGAGGAATGGGAACTCCGGTTCACACATTGGCAAGTGGAGTGA 552 ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 362 TCCTCAGTTACCTCACCGGAGGAATGGCAACTCCGGTTCACACATTGGCAATTGGAGTGA 421 Query 553 GTTACACGCAAGGGATCATATGGGAGATCATCTTAACATTTTCACTTCTCTTCACTGTCT 612 ||||||| |||||||||||||||||||| ||||||||||| |||||||||||||| |||| Sbjct 422 GTTACACTCAAGGGATCATATGGGAGATAATCTTAACATTCTCACTTCTCTTCACAGTCT 481 Query 613 ACGCCACTATTGTGGATCCGAAGAAAGGATCCCTTGATGGGTTCGGCCCACTTCTCACAG 672 |||||||||| |||||||| |||||||||||||||||||| | || ||||||||||||| Sbjct 482 ACGCCACTATGGTGGATCCCAAGAAAGGATCCCTTGATGGACTAGGTCCACTTCTCACAG 541 Query 673 GATTTGTCGTTGGAGCCAACATCCTTGCAGGAGGTGCCTTTTCTGGCGCCTCCATGAACC 732 |||| |||||||||||||||||||| ||||||||||||||||| || ||||| ||||||| Sbjct 542 GATTCGTCGTTGGAGCCAACATCCTAGCAGGAGGTGCCTTTTCGGGTGCCTCTATGAACC 601 Query 733 CCGCCCGGTCTTTTGGTCCCGCTTTGGTCTCTGGAAACTGGACTGACCATTGGGTATATT 792 ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct 602 CCGCCCGGTCTTTTGGTCCGGCTTTGGTCTCTGGAAATTGGACTGACCATTGGGTATATT 661 Query 793 GGGTTGGACCGTTGATCGGTGGTGGACTCGCCGGTTTCATCTACGAGAATGTCCTCATTG 852 |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 662 GGGTTGGACCGTTGATTGGTGGTGGACTCGCCGGTTTCATCTACGAGAACGTCCTCATTG 721 Query 853 ACCGTCCACATGTCCCAGTCGCTGACGACGAGCAACCATTGTTGAATTAAATGTGTTTGA 912 ||||||||||||||||||| |||||||| ||||||||||| ||| |||||||||||| || Sbjct 722 ACCGTCCACATGTCCCAGTTGCTGACGATGAGCAACCATTATTGGATTAAATGTGTT-GA 780 Query 913 A-ACTGTGCTAT 923 | | |||| ||| Sbjct 781 ATA-TGTGTTAT 791 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43498248297 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5