BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25820.1
Length=911
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481434 jgi|Araly1|481434|fgenesh2_kg.4__494__AT2G25820.1 863 0.0
> Ahg481434 jgi|Araly1|481434|fgenesh2_kg.4__494__AT2G25820.1
Length=732
Score = 863 bits (467), Expect = 0.0
Identities = 624/694 (90%), Gaps = 34/694 (5%)
Strand=Plus/Plus
Query 97 ATGGTGGATTCTCATGGCTCCGACACGGAATGTTCCT---CCAAGAAGAAAAAGGAGAAA 153
||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1 ATGGTGGATTCTCATGGTTCCGACACGGAATGTTCCTCAACCAAGAAGAGAAAGGAGAAA 60
Query 154 ACGAAAGAAAAGGGGGTATATCGTGGGGCTCGCATGAGGAGCTGGGGGAAATGGGTCTCG 213
| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 61 CCCAAAGAAAAAGGGGTATATCATGGGGCTCGCATGAGGAGCTGGGGGAAATGGGTCTCG 120
Query 214 GAGATTCGGGAGCCCCGTAAGAAATCAAGAATCTGGCTCGGGACTTTCCCCACGGCGGAG 273
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GAGATTCGGGAGCCTCGTAAGAAATCAAGAATCTGGCTCGGGACTTTCCCCACGGCGGAG 180
Query 274 ATGGCAGCGCGTGCCCATGATGTTGCGGCATTGAGTATCAAAGGAAGTTCCGCAATCCTT 333
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATGGCAGCCCGTGCCCACGATGTTGCGGCATTGAGTATCAAAGGAAGTTCCGCAATCCTC 240
Query 334 AACTT-CCCTGAGCTCGCGGATTTTCTGCCAAGACCAGTCTCGCTCAGCCAACAGGATAT 392
||||| ||| ||||||||||||||||||||| |||| |||||||||||||||||||| ||
Sbjct 241 AACTTTCCC-GAGCTCGCGGATTTTCTGCCACGACCTGTCTCGCTCAGCCAACAGGACAT 299
Query 393 CCAGGCCGCAGCCGCCGAAGCCGCTCTTATGGATTTCAAAACTGTACCATTCCATCTTCA 452
|||||| || || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CCAGGCTGCTGCTACCAAAGCCGCTCTTATGGATTTCAAAACTGTACCATTCCATCTTCA 359
Query 453 GGATGACTCAACGCCGTTGCAAACTAGGTGTGATACTGAGAAGATCGAAAAGTGgtcatc 512
|||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 360 GGATGAAACAACGCCGTTGCAAACTAGGTGTGATACTGAGAAGATCGAAAAGAGATCATC 419
Query 513 ctcatcgtcctcagcctcatcctcatcctcatcttcgtcctcgtcctcatcatcTATGCT 572
|||||| | ||| || | ||||||||||| | || ||| ||| | |||||
Sbjct 420 CTCATC--C-TCA---TC--C-TCATCCTCATC--C-TC---GTC---ATC-T--ATGCT 458
Query 573 TTCGGGGGAGCTAGGAGATATTGTGGAGTTGCCGAGTCTTGAAAACAATGTAAAATAC-G 631
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 459 CTCGGAGGAGCTAGGAGATATTGTGGAGTTGCCGAGTCTTGAAAACAATGTAAAA-ACCG 517
Query 632 ATTGT-GCGCTGTATGACTCGTTGGAGGGGCTGGTGTCGATGCCCCCATGGTTAGATGCT 690
||| | ||||| ||||||||||| ||||||||||| |||||||||||||||||||||| |
Sbjct 518 ATT-TCGCGCTTTATGACTCGTTAGAGGGGCTGGTATCGATGCCCCCATGGTTAGATGTT 576
Query 691 ACCGAA-AATGATTTTAGGTATGGAGATGATTCGGTACTGTTGGACCCATGTCTCAAAGA 749
|||||| || ||||||| ||||||| ||||||| ||| |||| |||||| ||||| ||||
Sbjct 577 ACCGAAGAA-GATTTTACGTATGGACATGATTCAGTAATGTTAGACCCACGTCTCCAAGA 635
Query 750 AAGCTTTTTGTGGAATTATGAGTAAGGttttttt 783
||| ||||||||||||||||||||| |||||||
Sbjct 636 AAGTTTTTTGTGGAATTATGAGTAA--TTTTTTT 667
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33776904462
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5