BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25830.1
Length=1405
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320374 jgi|Araly1|320374|fgenesh1_pm.C_scaffold_4000431 1552 0.0
> Ahg320374 jgi|Araly1|320374|fgenesh1_pm.C_scaffold_4000431
Length=984
Score = 1552 bits (840), Expect = 0.0
Identities = 946/996 (95%), Gaps = 12/996 (1%)
Strand=Plus/Plus
Query 35 ATGGCCTCCCATTGCTCCATGAGAGTAATCCTCCTCAGATTCTCCAATGGCGTCTCTTCC 94
||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1 ATGGCCTCCCATTGCTCTATGAGAGCAATCCTCCACAGATTCTCCAATGGCGTCTCTTCC 60
Query 95 AGATCCATTCTCAACTCCACTAACCATCGTCTTCTTAGTCTTACCATGACCAACACTCTC 154
||||||||||||||||||||||| |||||||||| || |||||||||||| |||||
Sbjct 61 AGATCCATTCTCAACTCCACTAAACATCGTCTTC----TC--ACCATGACCAACTCTCTC 114
Query 155 TCGTCTCTTTCCTCAATCTCTCCCCACACTACTACTTCGCATTTCACGGCTGCGTCACAA 214
|| |||||||||||||||||| || ||| ||||||||||||||||| | |||||||||
Sbjct 115 TCTTCTCTTTCCTCAATCTCT--CCTCAC-ACTACTTCGCATTTCAC-G--GCGTCACAA 168
Query 215 CAATCAGATGACCAGAACTGCTTCCGCAAGCTTCAACTCAGAAAGATTTCGATTTCAACT 274
| ||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||
Sbjct 169 CTATCAGATGACCAGAATTGCTTCCGAAAGCTTCAAGTCAGAAAGATTTCGATTTCAACT 228
Query 275 CCTCTTTGTATGGGTCGTCGTTCTTCCAAAATCGCTGGTCGAAAGGGCGCTCAAGATTCA 334
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 229 CCTCTTTGTATGGGTCGTCGTTCTTCCAAAATCGCTGGCCGAAAGGGGGCTCAAGATTCG 288
Query 335 AAGAAGGCGAAGCTATACTGTAGAATTGGCAAGGAGGTTGTATCTGCTGTCAAGAAAGGG 394
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 289 AAGAAGGCGAAGCTATACTGTAGAATTGGGAAGGAGGTTGTATCTGCTGTCAAAAAAGGG 348
Query 395 GGTCCAAACCCAGTTTCAAATACGACTCTAGCTACTATTCTTGACAAAGCTAAAGAACTG 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 GGTCCAAACCCAGTTTCAAATACGACTCTAGCTACTATTCTTGACAAAGCTAAAGAACTG 408
Query 455 GATGTACCGAAAGACATTGTGGAGCGTAATATTAAGAGGGCTTCTGAGAAGGGGCAAGAA 514
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 GATGTACCCAAGGACATTGTGGAGCGTAATATTAAGAGGGCTTCTGAGAAGGGGCAAGAA 468
Query 515 GCTTTTATAGAGAAGATTTACGAGGTATATGGCTACGGTGGTGTTAGTATGGTAGTCGAG 574
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 469 GCTTTTATAGAGAAGATTTACGAGGTATATGGCTATGGTGGGGTTAGTATGGTAGTCGAG 528
Query 575 GTCTTAACAGACAAAATTAATCGATCAGTGGCAGCTATTAGATCGGTTGTTAAGGATTAT 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 GTCTTAACAGACAAAATTAATCGATCAGTGGCAGCTATTAGATCGGTTGTTAAGGATTAT 588
Query 635 GGGGGAAAAATGGCTGATTCAGGATCTGTCATGTTCAAGTTTAAAAGAGTTAGGGTAGTG 694
|| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 589 GGAGGAAAAATGGCTGATTCAGGATCTGTCATGTTCAAGTTTAGACGAGTTAGGGTAGTG 648
Query 695 AATATAAAGGTCACCGAAGCTGACAAAGATCAGCTCCTTATTATTGCTTTAGATGCTGGA 754
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 649 AATATAAAGGTCACTGAAGCTGACAAAGATCAGCTCCTTAATATTGCTTTAGATGCTGGA 708
Query 755 GCAGAGGATGTTATTGAACCCCCAACTTATGAAGATGATACTGATGAAGACAGGGAAGAG 814
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 709 GCAGAGGATGTTATTGAGCCCCCAACTTATGAAGATGATACTGATGAAGATAGGGAAGAA 768
Query 815 AGGTACTACAAAATTGTAACTTCTAATGAGAACTACTCAACAATATTATCAAAGCTACGT 874
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 769 AGGTACTACAAAATTGTAACTTCTTCTGAGAACTACTCAACGATATTATCAAAGCTACGG 828
Query 875 GATGAAGGAGTGAACTTCGAGCCTGACAATGGCTCTGAACTGCTCCCTCTGACTACAGTT 934
|||||||| ||||| |||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 829 GATGAAGGTGTGAATTTCGAGCCTGACAACGGCTCTGAACTGCTCCCTCTTACTACAGTT 888
Query 935 GAGGTGGATGATGAGGCCATGGAATTGAACAAAGAGCTAATGCAGAAACTACTAGAACTT 994
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 889 GAGGTGGATGATGAGGCCATGGAACTGAACAAAGAGCTAATGCAGAAACTACTAGAACTT 948
Query 995 GATGATGTTGATGCTGTTTATATCGACCAAAAATGA 1030
||||| ||||||||||||||||||||||||||||||
Sbjct 949 GATGACGTTGATGCTGTTTATATCGACCAAAAATGA 984
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52526447855
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5