BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25840.2
Length=1527
Score E
Sequences producing significant alignments: (Bits) Value
Ahg900057 jgi|Araly1|900057|Al_scaffold_0004_707 1844 0.0
> Ahg900057 jgi|Araly1|900057|Al_scaffold_0004_707
Length=1236
Score = 1844 bits (998), Expect = 0.0
Identities = 1161/1240 (94%), Gaps = 10/1240 (1%)
Strand=Plus/Plus
Query 77 ATGGGACACGCCACGAGtctctctcacttcctcatcctctcttcctccaggttctctcgt 136
||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1 ATGGGGCACGCCACGACTCTCTCTCACTTCCTCATCCTCTCTTCCTCCAGGCTCTCTCGT 60
Query 137 ctcgggtctctcactagattactctccaaacccacct-ctctctccggctctTTTTCTTC 195
|||||||| | ||||||||| ||| | ||||||| || ||||||||||||||||||| ||
Sbjct 61 CTCGGGTCCCGCACTAGATTCCTCGCAAAACCCA-CTCCTCTCTCCGGCTCTTTTTC-TC 118
Query 196 CATTT-CGGTCACCGGACAAGGGTTCCGATGCTGTTGCTCCGTCGCCACAGATGACACTT 254
| ||| |||||||||||||||||||||||||||||||||||| ||||||||| ||| |||
Sbjct 119 CCTTTCCGGTCACCGGACAAGGGTTCCGATGCTGTTGCTCCGCCGCCACAGAAGACCCTT 178
Query 255 CTCCTTCTGTAAAGAAACGTGTGGTCTCTGGTGTCCAGCCTACAGGTTCAGTTCACTTAG 314
||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 179 CTCCTTCTGTAAAGAGACGCGTGGTCTCTGGTGTCCAGCCTACAGGTTCAATTCACTTAG 238
Query 315 GCAACTATCTCGGGGCTATCAAAAACTGGGTCGCTCTTCAGGATACATATGAAACACTCT 374
| ||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 239 GAAACTATCTCGGTGCTATCAAAAATTGGGTTGCTCTTCAGGATACATATGAAACACTCT 298
Query 375 TTATCATCGTAGACCATCACGCGATAACACTTCCATATGATACACGTCAACTAGGAAAGG 434
|||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 299 TTATCATCGTAGACTGTCACGCGATAACACTACCATATGATACACATCAACTAGGAAAGG 358
Query 435 CAACAACGGATACCGCAGCACTTTATCTAGCATGTGGTATAGACGTCTCTAAGGCTTCAG 494
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 359 CAACTACGGATACCGCAGCACTTTATCTAGCATGTGGTATAGACGTTTCTAAGGCTTCGG 418
Query 495 TATTTGTGCAATCTCACGTTCCCGCTCATGTCG-AGTTAATGTGGCTTTTATGTTCATCC 553
||||||||||||||||||| |||||||||| || |||||||||||||||||| | |||||
Sbjct 419 TATTTGTGCAATCTCACGTCCCCGCTCATG-CGCAGTTAATGTGGCTTTTATCTGCATCC 477
Query 554 ACACCTATTGGGTGGTTACAGAAAATGATTCAGTTCAAAGAGAAATCACGCAAGGAGGGG 613
|| |||||||| |||||| ||||||||| ||| || ||||||||||||||||||||||||
Sbjct 478 ACGCCTATTGGTTGGTTAAAGAAAATGACTCAATTTAAAGAGAAATCACGCAAGGAGGGG 537
Query 614 GTTGAGAATGCTAGTGTCGGTTTGTTTACTTATCCTGATCTGATGACTGCTGATATCCTC 673
| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GCTGAGGATGCTAGTGTCGCTTTGTTTACTTATCCTGATCTGATGACTGCTGATATCCTC 597
Query 674 TTGTATCAGTCTGATTTTGTCCCTGTTGGTGAGGACCAGAAGCAGCACATAGAACTTGCC 733
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 598 TTGTATCAGTCTGATTTTGTCCCTGTTGGCGAGGACCAGAAGCAGCACATAGAACTTGCC 657
Query 734 CGTGAAATTGCACAGCGTGTGAATCATTTATATGGTGGAAAG-AAGTGGAAGAAGCTTGG 792
|||||||| || |||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 658 CGTGAAATCGCTCAGCGTGTGAATCATTTATATGGTGG-AAGAAAGTGGAAGAAGCTTGG 716
Query 793 AGGGTATGA-AATTTTCCGCGGTGGTTCGCTCTTTAAGATACCAGAACCACTCATACCAC 851
||||||| | || ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 AGGGTAT-AGAACTTTGCGCGGTGGTTCGCTCTTTAAGATACCAGAACCACTCATACCAC 775
Query 852 AAGCTGGAGCTCGTGTTATGTCTCTTACTGATGGTCTTTCCAAGATGTCCAAGTCTGCCC 911
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||| || |
Sbjct 776 AAGCTGGAGCCCGTGTTATGTCTCTTACCGATGGTCTTTCCAAGATGTCCAAGTCCGCAC 835
Query 912 CTTCTGATCAGTCCCGGATTAATCTCCTTGACTCAAAAGATTTGATTGTGGACAAGATAA 971
|||||||||| |||||||| ||||||||||||||||||||| ||||||| ||||||||||
Sbjct 836 CTTCTGATCAATCCCGGATCAATCTCCTTGACTCAAAAGATCTGATTGTCGACAAGATAA 895
Query 972 AACGGTGCAAGACAGACTCATTTGCTGGGCTTGAATTTGACAATGCTGAGAGACCTGAAT 1031
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 896 AACGGTGCAAGACAGACTCATTTGCAGGCCTTGAATTTGACAATGCTGAGAGACCTGAAT 955
Query 1032 GCAACAATCTCCTCTCAATATATCAGATTGTTTCAGGCAAGAAAAAAGAGGAAGTGATGG 1091
||||||||||||| ||| |||||||||||||||| ||||||| |||||||||||||| ||
Sbjct 956 GCAACAATCTCCTTTCAGTATATCAGATTGTTTCGGGCAAGACAAAAGAGGAAGTGACGG 1015
Query 1092 AGGAATGCAAAGATATGAGCTGGGGTACATTTAAGCCTCTCCTTGCAGATGCTTTGATCG 1151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 AGGAATGCAAAGATATGAGCTGGGGTACATTTAAGCCTCTCCTTGCAGATGCTTTGATCG 1075
Query 1152 AACATCTGAGTCCAATCCAGGCCCGTTATCAGGAGATAATAGCGGAACCAGAGTATTTGG 1211
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1076 AACATCTGAGTCCTATCCAGGCCCGTTATCAGGAGATAATAGCGGAACCAGCGTATTTGG 1135
Query 1212 ACAAAATATTGTCAGAAGGTGCGGATAGAGCCGAGGAGTTGGGAGCTGTCACAATGCGCA 1271
||||| ||||||||||||||||||||||||| | ||| || |||| ||||||||||||||
Sbjct 1136 ACAAAGTATTGTCAGAAGGTGCGGATAGAGCGGCGGAATTAGGAGATGTCACAATGCGCA 1195
Query 1272 ATATGTATCAAGCTATGGGATACTATCAGAGGAGGAGATA 1311
||||||| ||||||||||||| |||||| |||||||||||
Sbjct 1196 ATATGTACCAAGCTATGGGATTCTATCAAAGGAGGAGATA 1235
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57173457745
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5