BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25850.2
Length=2910
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320377 jgi|Araly1|320377|fgenesh1_pm.C_scaffold_4000434 3639 0.0
Ahg491411 jgi|Araly1|491411|fgenesh2_kg.7__844__AT4G32850.6 1834 0.0
> Ahg320377 jgi|Araly1|320377|fgenesh1_pm.C_scaffold_4000434
Length=2367
Score = 3639 bits (1970), Expect = 0.0
Identities = 2212/2330 (95%), Gaps = 12/2330 (1%)
Strand=Plus/Plus
Query 275 AGTACTCAACAACGCACGGACGATGACTCTTCTCAACC---GGTAAAAGCTTCTCTTAAG 331
||||||||||||||||||||||||| |||||||| ||| |||||||| ||||||||
Sbjct 10 AGTACTCAACAACGCACGGACGATGGCTCTTCTCCACCGGTGGTAAAAG---CTCTTAAG 66
Query 332 AGCTATGGGATCACGGAGCCACTGTCTATTGCTGGACCTTCTGCTGCTGATGTTAAGCGT 391
| |||||| |||||| ||||||| ||||||||||| |||| ||| |||||||||||||||
Sbjct 67 ACCTATGGAATCACGAAGCCACTTTCTATTGCTGGTCCTTGTGCCGCTGATGTTAAGCGT 126
Query 392 AATTTGGAACTAGAGAAGTTTCTGGTTGATGAGGGGCTCTACGAGAGCAAGGAAGAAACT 451
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 127 AATTTGGAACTAGAGAAGTTTCTGGTTGATGAGGGGCTCTATGAGAGCAAGGAAGAAACT 186
Query 452 ATGCGGAGAGAGGAAGTTGTGGTTCGCATTGATCAGATTGTAAAACACTGGGTGAAACAG 511
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 187 ATGCGGAGAGAGGAAGTTCTGGTGCGCATTGATCAGATTGTAAAACACTGGGTGAAACAG 246
Query 512 TTAACTCGTCAGAGGGGCTATACTGATCAGATGGTGGAGGATGCAAATGCTGTCATTTTC 571
||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||
Sbjct 247 TTAACTCGTCAGAGGGGCTATACAGATCAGATGGTGGACGATGCAAATGCCGTCATTTTC 306
Query 572 ACTTTTGGATCTTACCGCCTTGGAGTTCACGGACCTATGGCTGATATTGATACTTTGTGT 631
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 307 ACTTTTGGATCTTACCGCCTTGGAGTTCACGGACCTAGGGCTGATATTGATACTTTGTGT 366
Query 632 GTTGGCCCATCTTATGTTAACCGAGAGGAGGATTTCTTCATTTTCTTCCGTGATATATTG 691
|||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||
Sbjct 367 GTTGGCCCATCTTATGTTAACCGAGAGGAGGATTTCTTCATTATCTTGCGTGATATGTTG 426
Query 692 GCTGAAATGGAAGAAGTGACTGAACTTCAACCTGTTACTGATGCCCATGTCCCAGTCATG 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 GCTGAAATGGAAGAAGTGACTGAACTTCAACCTGTTACTGATGCCCATGTCCCAGTCATG 486
Query 752 AAATTTAAGTTCCAAGGAATATCAATTGATCTTCTGTATGCTAGCATATCGCTTCTAGTT 811
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 487 AAATTTAAGTTCCAAGGAATATTGATTGATCTTCTGTATGCTAGCATATCGCTTCTAGTT 546
Query 812 ATCCCACAGGATCTGGATATCTCCAACTCTTCTGTGCTGTGTGACGTGGATGAACAAACT 871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 ATCCCACAGGATCTGGATATCTCCAACTCTTCTGTGCTGTGTGACGTGGATGAACAAACT 606
Query 872 GTCCGCAGTCTTAATGGTTGTAGGGTTGCTGATCAGATTCTTAAACTTGTTCCAAATTCC 931
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 607 GTCCGCAGTCTTAATGGTTGTAGGGTTGCTGATCAGATTCTTAAACTCGTTCCAAATTCC 666
Query 932 GAGCACTTCCGGACAACATTAAGATGCCTGAAGTACTGGGCTAAGAAGCGTGGGGTCTAT 991
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GAGCACTTCCGGACAACATTAAGATGCCTGAAGTACTGGGCTAAGAAGCGTGGGGTCTAT 726
Query 992 TCAAATGTTACTGGATTTCTTGGTGGTGTAAACTGGGCACTTCTGGTTGCACGCCTTTGC 1051
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 727 TCAAATGTTACTGGATTTCTTGGTGGTGTAAACTGGGCACTTCTGGTTGCACGGCTGTGC 786
Query 1052 CAGTTTTATCCAAATGCTATTCCTAGTATGTTGGTTTCTCGATTTTTTAGAGTATATACA 1111
||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 787 CAGCTTTATCCAAATGCTATTCCTAGTATGTTGGTTTCTCGATTTTTTAGGGTATATATA 846
Query 1112 CAATGGCGCTGGCCGAATCCAGTCATGCTTTGTGCAATAGAAGAAGATGACCTTAGCTTT 1171
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 847 CAATGGCGCTGGCCAAATCCAGTCATGCTTTGTGCAATAGAAGAAGATGAGCTTAGCTTT 906
Query 1172 CCTGTTTGGGACCCACGAAAAAATCATCGTGACCGCTATCATCTTATGCCAATAATAACT 1231
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 CCAGTCTGGGACCCACGAAAAAATCATCGTGACCGCTATCATCTTATGCCAATAATAACT 966
Query 1232 CCTGCATACCCATGCATGAATTCTAGTTACAATGTCTCTCAAAGCACTCTTCGTGTTATG 1291
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 967 CCTGCATACCCATGCATGAATTCTAGTTACAATGTCTCTCAAAGCACACTTCGTGTTATG 1026
Query 1292 ACAGAGCAATTCCAGTTTGGCAACACGATCTGTCAGGAGATTGAGTTAAATAAACAACAC 1351
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1027 ACAGAGCAATTCCAGTTTGGCAACACGATCTGTCAGGAGATTGAGCTAAATAAAAAACAC 1086
Query 1352 TGGAGTTCCTTATTTCAGCAATATATGTTCTTCGAGGCATATAAAAACTACCTTCAGGTT 1411
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1087 TGGAGTTCCTTATTTGAGCAATATATGTTCTTTGAGGCATATAAAAACTACCTTCAGGTT 1146
Query 1412 GATGTACTAGC-TGCAGATGCCGAAGATTTATTGGCATGGAAAGGTTGGGTGGAGTCACG 1470
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1147 GATGTACTAGCATT-AGATGCCGAAGATTTATTGGCATGGAAAGGTTGGGTGGAGTCACG 1205
Query 1471 GTTCAGGCAACTGACCTTGAAGATAGAACGAGACACAAATGGGATGTTAATGTGCCACCC 1530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1206 GTTCAGGCAACTGACCTTGAAGATAGAACGAGACACAAATGGGATGTTAATGTGCCACCC 1265
Query 1531 TCAACCAAACGAGTATGTAGACACTTCGAAGCAGTTTCGACATTGTGCCTTTTTCATGGG 1590
||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 1266 TCAACCAAATGAGTATGTAGACACTTCAAAGCAGTTTCAACATTGTGCCTTTTTCATGGG 1325
Query 1591 CTTGCAGAGGGCAGATGGATTTGGTGGCCAAGAATGTCAACAGTTTGATATACGTGGAAC 1650
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1326 CTTGCAGAGGGCAGAAGGATTTGGTGGCCAAGAATGTCAACAGTTTGATATACGTGGAAC 1385
Query 1651 AGTGGACGAATTCAGGCAAGAGGTAAACATGTATATGTTTTGGAGACCTGGGATGGATGT 1710
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1386 AGTGGACGAGTTCAGGCAAGATGTAAACATGTATATGTTTTGGAGACCTGGGATGGATGT 1445
Query 1711 GCATGTTTCTCATGTTCGAAGACGGCAGCTTCCATCTTTTGTTTTTCCAAATGGATATAA 1770
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1446 GTATGTTTCTCATGTTCGAAGACGGCAGCTTCCATCTTTTGTTTTTCCAAATGGATATAA 1505
Query 1771 AAGGTCTCGGCAATCAAGGCACCAGAGTCAACAATGCAGAGAACCTGGTGATGAGGG-CG 1829
|||| ||||||| ||||||||||||| |||||||||||||||||||||||| | ||| ||
Sbjct 1506 AAGGCCTCGGCAGTCAAGGCACCAGAATCAACAATGCAGAGAACCTGGTGAGG-GGGTCG 1564
Query 1830 TTGGTTCTTTATCCGACTCTGTTGA-GAGATATGCGAAGAGAAAGAACGATGATGAAATT 1888
||| |||||| ||| |||||||||| | ||||||||||||||||||| ||| ||||||||
Sbjct 1565 TTGCTTCTTTGTCCAACTCTGTTGATG-GATATGCGAAGAGAAAGAATGATAATGAAATT 1623
Query 1889 ATGAATTCCAGGCCAGAGAAACGTGAGAAGCGCGCATCTTGTAGTCTACATACTCTGGAT 1948
||| || || |||||||||||||||||||||| |||||| |||||| ||||| |||||||
Sbjct 1624 ATGGATACCCGGCCAGAGAAACGTGAGAAGCGTGCATCTCGTAGTCCACATAGTCTGGAT 1683
Query 1949 GCAGCTTCTCCTGACAGCAGTGGTATCACTACTAGTGGGACTCCTCAGATTGGCATTGTT 2008
|||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 1684 GCAGTTTCTCCTGACAGCAGTGGTATCACTACTGGTGAGACTCCTCAGATTGGCATTGCG 1743
Query 2009 CCAGGTCCTAGAGCTGAATGCTTAGTAACTGGTGATCTTGTTTGCAATGTTACAAGTCTT 2068
|||||||||||| |||||||||| || ||||||||||||||||||||||||| |||||||
Sbjct 1744 CCAGGTCCTAGATCTGAATGCTTGGTTACTGGTGATCTTGTTTGCAATGTTAGAAGTCTT 1803
Query 2069 CCTAACGTGGAAGTTGAGGCTGAAAAGTTTATCAGTAAAATCACGGAACTAAGAAAATTC 2128
|||||||||||||| ||||||||||| ||||||||||||| ||| ||||| | ||||||
Sbjct 1804 CCTAACGTGGAAGTCGAGGCTGAAAAATTTATCAGTAAAAGCACAGAACTCATAAAATTT 1863
Query 2129 TCTCAGTACGAGCATACCTCTGGTAGCGAGCAAATCCTGGAAGTAGATAGTAGGGCTCTA 2188
||||| |||||||||| ||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 1864 TCTCAATACGAGCATAACTCCGGTTGCGAGCAAATCCTGGAAGTAGATAGTAGGGCTCTA 1923
Query 2189 GTTCAAAGTTATCATGACCTGGCTGAGCCTGTAGCAAAACATGTGAGACCTGACCTTAGT 2248
|||||| ||||||||| |||||||||||||||| |||||||||||||||||||| | ||
Sbjct 1924 GTTCAAGGTTATCATGGTCTGGCTGAGCCTGTAGGAAAACATGTGAGACCTGACCCTCGT 1983
Query 2249 GCTTTGCTAGCGTGTGAAGGTGGGCAGAATAAAGAAATAGGTCATGATATGGGCTCTGAA 2308
||| ||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 1984 GCTGTGCTAGCATGTGAAGGTTGGCAGAATAAAGAAATAGGTCGTGATATGGGCTCTGAA 2043
Query 2309 TCTATTAATGACACTGACACGCAACATCTTCCAAGGCGACTAAATGTAAATGAAGATGTT 2368
|||||||||||||||| ||| |||||||||||||||||||| |||||||| |||||||||
Sbjct 2044 TCTATTAATGACACTGCCACACAACATCTTCCAAGGCGACTTAATGTAAAAGAAGATGTT 2103
Query 2369 GATGAAGTTGAGAGGGAAGCCAAGTTGGGAGAAATTGCTGGTGGTGTTTTGTGGAATGGA 2428
||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||
Sbjct 2104 GATGAAGTTGAGAGGGAAGCCAAGTCGGGAGAAATTGCTGATAGTGTTTTGTGGAATGGA 2163
Query 2429 CACTGTGGGCGGAACCTTGACCATGAGGGTTTTGTGACTCCTGCAAATTTGGATTCAGCT 2488
||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 2164 TACTGTGGGCGGAACCTTGATCATGAGGGTTTTTTGACTCCTGCAAATTTGGATTCAGCT 2223
Query 2489 GTGGAAAATAGAAACTTGCATTCAGACGGATTGTTCAAAAGTGGCTTGCCAGAAGAACTT 2548
|||||| |||||||||||||| ||||| |||||||||||||||||||| |||||||||||
Sbjct 2224 GTGGAACATAGAAACTTGCATGCAGACAGATTGTTCAAAAGTGGCTTGTCAGAAGAACTT 2283
Query 2549 CAGTCAAATTCTTTGCTCAGCGGGACGGGGAAGCTGGACGATGGAGCTAG 2598
||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 2284 CAGTCAAATCCTTTGCTCAGCGGGATGGGGAAGCTGGACGATGGAGCTAG 2333
Score = 58.4 bits (31), Expect = 3e-07
Identities = 35/37 (95%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 2710 TAGCAGCAGGAGGTTGAGCTTGAAGTCCGTAGCGTGA 2746
|||||||||||||||||||||||||||| ||| ||||
Sbjct 2331 TAGCAGCAGGAGGTTGAGCTTGAAGTCCATAGTGTGA 2367
> Ahg491411 jgi|Araly1|491411|fgenesh2_kg.7__844__AT4G32850.6
Length=3048
Score = 1834 bits (993), Expect = 0.0
Identities = 1457/1682 (87%), Gaps = 27/1682 (2%)
Strand=Plus/Plus
Query 328 TAAGAGCTATGGGATCACGGAGCCACTGTCTATTGCTGG-ACCTTCTGCTGCTGATGTTA 386
||| |||||||| || ||| |||| || || ||||||| ||| || | || ||| |||
Sbjct 379 TAAAAGCTATGGAATTACGAAGCCGCTCTCGCTTGCTGGCCCCTCCT-CGGCGGATATTA 437
Query 387 AGCGTAATTTGGAACTAGAGAAGTTTC-TGGTTGATGAGGGGCTCTACGAGAGCAAGGAA 445
|||||||| | || || |||||| | | ||||||||||||| |||||||||||||||||
Sbjct 438 AGCGTAATGTCGAGCTGGAGAAG-TACTTGGTTGATGAGGGACTCTACGAGAGCAAGGAC 496
Query 446 GAAACTATGCGGAGAGAGGAAGTTGTGGTTCGCATTGATCAGATTGTAAAACACTGGGTG 505
|| || |||||||||||||||||| ||| |||||||||||||||||||| |||||||||
Sbjct 497 GATACCATGCGGAGAGAGGAAGTTCTGGGACGCATTGATCAGATTGTAAAGCACTGGGTG 556
Query 506 AAACAGTTAACTC-GTCAGAGGGGCTATACTGATCAGATGGTGGAGGATGCAAATGCTGT 564
||||||||||| | | || || || ||||| |||||||||||||||||||||||||||||
Sbjct 557 AAACAGTTAACGCAG-CAAAGAGGATATACAGATCAGATGGTGGAGGATGCAAATGCTGT 615
Query 565 CATTTTCACTTTTGGATCTTACCGCCTTGGAGTTCACGGACCTATGGCTGATATTGATAC 624
||||||||| |||||||| ||||| ||||| || || || ||| |||||| ||||||||
Sbjct 616 CATTTTCACCTTTGGATCCTACCGACTTGGCGTGCATGGTCCTGGGGCTGACATTGATAC 675
Query 625 TTTGTGTGTTGGCCCATCTTATGTTAACCGAGAGGAGGATTTCTTCATTTTCTTCCGTGA 684
|||||||||||| ||||||||||||||||| ||||||||||||||||| |||| | |||
Sbjct 676 TTTGTGTGTTGGGCCATCTTATGTTAACCGGGAGGAGGATTTCTTCATCATCTTGCATGA 735
Query 685 TATATTGGCTGAAATGGAAGAAGTGACTGAACTTCAACCTGTTACTGATGCCCATGTCCC 744
|||||||||||| ||||||||||||||||| || || |||||| | || |||||||| ||
Sbjct 736 TATATTGGCTGAGATGGAAGAAGTGACTGAGCTCCATCCTGTTCCCGACGCCCATGTTCC 795
Query 745 AGTCATGAAATTTAAGTTCCAAGGAATATCAATTGATCTTCTGTATGCTAGCATATCGCT 804
||||||||||||||||| ||||||||| | |||||||| || |||||||||||||| ||
Sbjct 796 GGTCATGAAATTTAAGTTTCAAGGAATACCGATTGATCTGCTCTATGCTAGCATATCACT 855
Query 805 TCTAGTTATCCCACAGGATCTGGATATCTCCAACTCTTCTGTGCTGTGTGACGTGGATGA 864
| ||||| | |||||||||||||||||||||| |||||||||||||||||| || |||||
Sbjct 856 TTTAGTTGTGCCACAGGATCTGGATATCTCCAGCTCTTCTGTGCTGTGTGATGTTGATGA 915
Query 865 ACAAACTGTCCGCAGTCTTAATGGTTGTAGGGTTGCTGATCAGATTCTTAAACTTGTTCC 924
| ||| || || ||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct 916 GCCAACCGTTCGAAGTCTTAATGGTTGTAGAGTTGCTGATCAGATTCTGAAACTCGTTCC 975
Query 925 AAATTCCGAGCACTTCCGGACAACATTAAGATGCCTGAAGTACTGGGCTAAGAAGCGTGG 984
||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 976 AAATTTTGAGCACTTCCGGACAACTTTAAGATGCCTGAAGTATTGGGCTAAGAAGCGTGG 1035
Query 985 GGTCTATTCAAATGTTACTGGATTTCTTGGTGGTGTAAACTGGGCACTTCTGGTTGCACG 1044
|| ||||||||||| |||||||||||||| |||||||||||||||||| ||||||| ||
Sbjct 1036 CGTGTATTCAAATGTGACTGGATTTCTTGGCGGTGTAAACTGGGCACTTTTGGTTGCTCG 1095
Query 1045 CCTTTGCCAGTTTTATCCAAATGCTATTCCTAGTATGTTGGTTTCTCGATTTTTT-AGAG 1103
| |||||| | ||||||||||| |||||||||||| |||||||||| |||||| ||||
Sbjct 1096 TGTCTGCCAGCTCTATCCAAATGCAATTCCTAGTATGCTGGTTTCTCG-TTTTTTCAGAG 1154
Query 1104 TATATACACAATGGCGCTGGCCGAATCCAGTCATGCTTTGTGCAATAGAAGAAGATGACC 1163
| ||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||| |
Sbjct 1155 TGTATACTCAATGGCGGTGGCCGAACCCAGTCATGCTTTGTGCAATAGAAGAGGATGAGC 1214
Query 1164 TTAGCTTTCCTGTTTGGGACCCACGAAAAAATCATCGTGACCGCTATCATCTTATGCCAA 1223
|| | |||||||| |||||||| || ||||||||||||||||||||||| ||||||||||
Sbjct 1215 TTGGATTTCCTGTCTGGGACCCTCGTAAAAATCATCGTGACCGCTATCACCTTATGCCAA 1274
Query 1224 TAATAACTCCTGCATACCCATGCATGAATTCTAGTTACAATGTCTCTCAAAGCACTCTTC 1283
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1275 TAATAACTCCAGCTTACCCATGCATGAATTCTAGTTACAATGTCTCTCAAAGCACTCTTC 1334
Query 1284 GTGTTATGACAGAGCAATTCCAGTTTGGCAACACGATCT-GTCAGGAGATTGAGTTAAAT 1342
| |||||||||||||| ||||||||||| |||| |||| | ||||||||||| ||||||
Sbjct 1335 GCGTTATGACAGAGCAGTTCCAGTTTGGTAACAATATCTTG-CAGGAGATTGAATTAAAT 1393
Query 1343 AAACAACACTGGAGTTCCTTATTTCAGCAATATATGTTCTTCGAGGCATATAAAAACTAC 1402
||||| |||||||| || |||||| | ||||||||||| |||||||||||||||||||||
Sbjct 1394 AAACAGCACTGGAGCTCTTTATTTGAACAATATATGTTTTTCGAGGCATATAAAAACTAC 1453
Query 1403 CTTCAGGTTGATGTACTAGCTGCAGATGCCGAAGATTTATTGGCATGGAAAGGTTGGGTG 1462
|||||||||||| || | || | |||||| |||||||||||||| ||||| |||||||||
Sbjct 1454 CTTCAGGTTGATATAGTGGCAGGAGATGCAGAAGATTTATTGGCTTGGAAGGGTTGGGTG 1513
Query 1463 GAGTCACGGTTCAGGCAACTGACCTTGAAGATAGAACGAGACACAAATGGGATGTTAATG 1522
||||| |||||||| || |||||||| ||||||||| ||||||| |||||||||||||||
Sbjct 1514 GAGTCGCGGTTCAGACAGCTGACCTTAAAGATAGAAAGAGACACTAATGGGATGTTAATG 1573
Query 1523 TGCCA-CCCTCAACCAAACGAGTATGTAGACACTTCGAAGCAGTTTC-GACATTGTGCCT 1580
||||| ||| |||||||| |||||||||||||| | | |||||||| | ||||||||||
Sbjct 1574 TGCCATCCC-CAACCAAATGAGTATGTAGACACGGCTAGGCAGTTTCTG-CATTGTGCCT 1631
Query 1581 TTTTCATGGGCTTGCAGAGGGCAGATGGATTTGGTGGCCAAGAATGTCAACAGTTTGATA 1640
||||||||||||||||||||||||| ||| ||||||| |||||||||||||| |||||||
Sbjct 1632 TTTTCATGGGCTTGCAGAGGGCAGAGGGAGTTGGTGGTCAAGAATGTCAACAATTTGATA 1691
Query 1641 TACGTGGAACAGTGGACGAATTCAGGCAAGAGGTAAACATGTATATGTTTTGGAGACCTG 1700
||||||| || || || || ||||| ||||| ||||||||||||||||| |||| |||||
Sbjct 1692 TACGTGGTACGGTCGATGAGTTCAGACAAGAAGTAAACATGTATATGTTCTGGAAACCTG 1751
Query 1701 GGATGGATGTGCAT-GTTTCTCATGTTCGAAGACGGCAGCTTCCATC-TTTTGTTTTTCC 1758
||||||||||| | |||||||||||||| ||||| |||||||| || ||||||||| ||
Sbjct 1752 GGATGGATGTGT-TCGTTTCTCATGTTCGTAGACGACAGCTTCC-TCCTTTTGTTTTCCC 1809
Query 1759 AAATGGATATAAAAGGTCTCGGCAATCAAGGCACCAGAGTCAACAATGCAGAGAACCTGG 1818
|||||||||| |||| ||||||| || |||||||| | ||||| | || || ||||
Sbjct 1810 AAATGGATATCGAAGGCCTCGGCAGTCCAGGCACCAAAATCAACCGGGTGGAAAATCTGG 1869
Query 1819 TGATGAGGGCGTTGGTTCTTTATCC-GACTCTGT--TG-AGAGATATGCGAAGAGAAAGA 1874
||| || ||| || |||| || | | |||||| || |||| |||| ||||||||||
Sbjct 1870 TGAAGATGGCACTGTTTCTC-ATTCTGGCTCTGTGGTGGAGAGGCATGCCAAGAGAAAGA 1928
Query 1875 ACGAT-GATGAAATTATGAATTCCAGGCCAGAGAAACGTGAGAAGCGCGCATCT-TGTAG 1932
||||| | |||||| ||| || | ||||||||||||| ||||||||| |||||| | |||
Sbjct 1929 ACGATAG-TGAAATGATGGATGCGAGGCCAGAGAAACCTGAGAAGCGTGCATCTCT-TAG 1986
Query 1933 TCTACATACTCTGGATGCAGCTTCTCCTGACAGCAGTGGTATCACTACTAGTGGGACTCC 1992
|| ||| | ||| ||| || ||||||||| || |||| |||||||||| || |||||||
Sbjct 1987 TCCACAGAGTCTAGATATAGTTTCTCCTGAAAGTAGTGCTATCACTACTGGTTGGACTCC 2046
Query 1993 TC 1994
||
Sbjct 2047 TC 2048
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109852266580
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5