BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25870.1
Length=1951
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932772 jgi|Araly1|932772|scaffold_400760.1 2750 0.0
> Ahg932772 jgi|Araly1|932772|scaffold_400760.1
Length=1795
Score = 2750 bits (1489), Expect = 0.0
Identities = 1697/1799 (94%), Gaps = 7/1799 (0%)
Strand=Plus/Plus
Query 25 CTCGCCTCCGTGTCTCTCCAATGCTCTCTCGTGTCTGCCCAACCCTCCGCTATAATCGTA 84
||||||||| ||||||||||||||||| ||||||| ||||| ||||||| |||| |||
Sbjct 3 CTCGCCTCC--GTCTCTCCAATGCTCTCGCGTGTCTACCCAATCCTCCGCCATAACCGTC 60
Query 85 TCTGGTCTGCTCATGCGCGTGAAATGCCACGCGCCACCCTCCTTCTCCTCCAACCCAACT 144
||| ||||| | ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 61 TCTTCTCTGCAGAAGCGCGTGAAATGCCACGCGCCACTCTCCTTCTCCTCCAACCCAACT 120
Query 145 TCTTCCACTCTTCCCCCAAAACTGCTCTTGTGAATCGTCTCGATGTTACTTCATCGGAGT 204
|| | | || |||||| | |||| ||| | ||||||||||||||||| |||| || ||||
Sbjct 121 TCCTACGCTTTTCCCCGAGAACTCCTCCTCTGAATCGTCTCGATGTTTCTTCGTCCGAGT 180
Query 205 TTTCTTCCATGTTCCGTCGGAGCTTCCACGCTTTACGCAGCACCGTAGGAGACTGGA-GA 263
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 181 TTTCTTCCATGTTCCGTCGGAGATTCCACGCTTTACGCAGCACCGTAGGAGACTGGACG- 239
Query 264 AAGCTTCCGAAACCGCCGGGTCAGGTTTTTGCGGAGAGGAGAGAATACAGGAAGATTAGA 323
|||||||||||||| ||||||| |||||| ||||||||||||||||| ||||||| |||
Sbjct 240 AAGCTTCCGAAACCTCCGGGTCGGGTTTTCGCGGAGAGGAGAGAATATAGGAAGACTAGG 299
Query 324 AGGAGAGCTCCGAAGAAGAAACAGGAATTGGAGCTTAGTGTTAGTATCTGCATCGAAGAA 383
|||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 300 AGGAGAACGCCGAAGAAGAAACAGGAATTGGAGCTTAGTGTTAGCATCTGCATCGAAGAA 359
Query 384 CAGCTTCCTGATGATCTCGAGATTCAGAATATTGCAGAAATGCTTCGTCTCAATGTACCT 443
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||
Sbjct 360 CAGCTTCCTGATGATCTTGAGATTCAGAATATTGCGGAAATGCTTCGTCTCAATGTGCCT 419
Query 444 ATGGCAATGACATTGGCTTTCAATGGTTTGAAAGATTCAAAGTATAAAACAAGAGAGACT 503
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 420 ATGGCAATGACATTGGCTTTCAATGGTTTGAAAGATTCCAAGTATAAAACAAGAGAGACT 479
Query 504 GATATAGAAGATCTTGGTGGGTATGAAACTGTTGAATTATCGGTGATGCTTTGTAATGAT 563
||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||
Sbjct 480 GATATAGAAGATCTTGGTGGGTACGAAACTGTCGAATTATCGGTCATGCTTTGTAATGAT 539
Query 564 GATTTTATTTGTAAACTCAACAAAGAGTGGAGAGGTGAAGATCATGCTACTGATGTGCTT 623
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 540 GATTTCATTTGTAAACTCAACAAAGAGTGGAGAGGTGAAGATCATGCTACAGATGTGCTT 599
Query 624 TCCATGTCACAACATGTCCCTGAACTGAAGCTTCCAGTACTTATGATGGGAGATCTCGTC 683
|||||||||||||||||||||||| ||||||||||||| ||||||||||||||| | |||
Sbjct 600 TCCATGTCACAACATGTCCCTGAATTGAAGCTTCCAGTGCTTATGATGGGAGATATTGTC 659
Query 684 ATTTCTGTTGAGACAGCTGCAAGGCAAGCTGCAGAGAGAGGGCATACTCTTCTTGATGAA 743
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 660 ATTTCTGTTGAGACAGCTGCAAGGCAGGCTGCAGAGAGAGGGCACACTCTTCTTGATGAG 719
Query 744 ATACGCATTCTTGTGATTCATGGGTTGCTACATCTACTGGGATTTGATCATGAAATCAGC 803
||||| |||||||||||||||||||||||||| |||||||| ||||||||||| ||||||
Sbjct 720 ATACGTATTCTTGTGATTCATGGGTTGCTACACCTACTGGGCTTTGATCATGAGATCAGC 779
Query 804 GACGAGGCTGAGCAAGAAATGGAAGAGGAAGAGGAGTTGTTGCTAAAAAACCTTGGGTGG 863
|||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||
Sbjct 780 AACGAGGCTGAGCAAGAAATGGAGGAGGAGGAGGAGTTGTTGCTAAAAAGCCTTGGGTGG 839
Query 864 AAAGGAAAAGGACTCATTCAGAGTGCATATGACATTCAAAAAACAACTACAGTTCAGCCG 923
|||||||||||||||||||||||||||||||||||| |||||||| ||| | ||||| |
Sbjct 840 AAAGGAAAAGGACTCATTCAGAGTGCATATGACATTGAAAAAACAGCTAAACCTCAGCTG 899
Query 924 GAGAAATCAGATGACAGGAAGGAAGGGGATGGCCTAAGATTGTACAAACCAAAGTTCTCC 983
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 900 GAGAAATCAGATGACAGGAAGGAAGGGGATGGCCTAAGATTGTACAGACCAAAGTTCTCC 959
Query 984 TATATATTCTGTGATATGGATGGTACACTGCTTAACAGTAAAAGTCAGATTTCGGAGGCA 1043
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 960 TATATATTCTGTGATATGGATGGCACACTGCTCAACAGTAAAAGTCAGATTTCGGAGGCA 1019
Query 1044 AATGCAAAAGCTTTAAAAGAAGCCCTTCTGAGGGGACTTAAAGTAGTCATAGCTACGGGG 1103
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1020 AATGCAAAAGCTTTAAAAGAAGCCATGCTGAGGGGACTTAAAGTAGTCATAGCTACGGGG 1079
Query 1104 AAGTCCCGCCCAGGTGCGATCAGAATCTTGAAGACGGCTGATCTAACTGGATCCGATGGC 1163
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1080 AAGTCCCGCCCAGGTGCGATCAGAATCTTGAAGACGGCTGATCTAACTGGACCCGATGGC 1139
Query 1164 ATTATCTCAGAGTCCTCTCCAGGCGTTTTCGTTCAGGGATTACTTGTCTATGGTAGACAA 1223
||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1140 ATTGTCTCAGAGTCCTCTCCAGGCGTTTTCGTTCAGGGCTTACTTGTCTATGGTAGACAG 1199
Query 1224 GGGAAAGAAGTGTATCGAGGAAACTTAGACCGAGATGTCTGCAGAGAGACCTGTCTTTAT 1283
||||||||||| ||| ||||| |||| ||||||||||||||||||||||| ||||||||
Sbjct 1200 GGGAAAGAAGTTTATAGAGGATACTTGGACCGAGATGTCTGCAGAGAGACGTGTCTTTAC 1259
Query 1284 TCTTTGGAGCATCGAATTCCTCTCATTGCATTCAGCCAGGATCGCTGCTTGACATTGTTT 1343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 TCTTTGGAGCATCGAATTCCTCTCATTGCATTCAGCCAGGATCGCTGCTTGACATTGTTT 1319
Query 1344 GACCACCCTCTTGTCGACTCTCTTCACACAATCTACAATGAGCCAAAGGCCGAAATTATA 1403
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1320 GACCACCCTCTTGTCGACTCTCTTCACACAATCTACAATGAGCCAAAGGCTGAAATCATA 1379
Query 1404 TCATCGGTTGATCAACTGATAGCTGAAGCTGACATTCAGAAAGTGATATTTATGGACACA 1463
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 TCGTCGGTTGATCAACTTATAGCTGAAGCTGACATTCAGAAAGTGATATTTATGGACACA 1439
Query 1464 ACCGAGGGAGTCTCATCTGTTATCCGTCCGTATTGGTCAGAAGCTACAGGAGACCGTGCT 1523
|||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1440 ACCGAGGGGGTCTCATCTGTTATCCGTCCGTATTGGTCAGAAGCTACAGGCGATCGTGCT 1499
Query 1524 AATGTTGTTCAAGCTCAATCAGACATGCTAGAAATCGTCCCACCCGGAACCTCCAAAGGG 1583
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1500 AATGTTGTTCAAGCTCAATCAGACATGCTGGAAATCGTCCCACCAGGAACCTCCAAAGGG 1559
Query 1584 AATGGTGTAAAAATGCTACTCAATCATTTGGGCGTTTCACCGGATGAGATAATGGCGATT 1643
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 AACGGTGTAAAAATGCTACTCAATCATTTGGGCGTTTCACCGGATGAGATAATGGCGATT 1619
Query 1644 GGAGATGGAGAAAATGACATAGAGATGCTGCAACTGGCCTCGTTGGGAGTTGCTCTGAGC 1703
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1620 GGAGATGGAGAAAACGACATAGAGATGCTGAAACTGGCCTCGTTGGGAGTTGCTCTGAGC 1679
Query 1704 AACGGTGCAGAAAAAACAAAGGCGGTGGCTGATGTGATTGGTGTGAGCAACGACCAAGAT 1763
|||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1680 AACGGTGCAGAAAAGACAAAGGCAGTGGCTGATGTGATCGGTGTGAGCAACGACCAAGAT 1739
Query 1764 GGTGTTGCTGATGCCATCTACCGCTACGCATTCTGAGACTCCACCACCATATTTAAGTA 1822
||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 1740 GGTGTTGCTGATGCCATCTACCGCTACGCTTTCTGAGACTCCACCA---TATTTAAGTA 1795
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73323721625
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5