BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G25880.1 Length=1185 Score E Sequences producing significant alignments: (Bits) Value Ahg481442 jgi|Araly1|481442|fgenesh2_kg.4__502__AT2G25880.1 1375 0.0 Ahg320379 jgi|Araly1|320379|fgenesh1_pm.C_scaffold_4000436 1358 0.0 Ahg944667 jgi|Araly1|944667|scaffold_700896.1 865 0.0 > Ahg481442 jgi|Araly1|481442|fgenesh2_kg.4__502__AT2G25880.1 Length=970 Score = 1375 bits (744), Expect = 0.0 Identities = 849/900 (94%), Gaps = 6/900 (1%) Strand=Plus/Plus Query 57 TATCTT-GGCTCATCAACGATCTCTTCCATGGGGATTTCTACAGAGACGCAGCAAATTGC 115 |||||| || |||||| ||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1 TATCTTAGG-TCATCATCGATCTCTTCCATGGGGATTTCTACAGAGACGCAGCAAAATGC 59 Query 116 GGCTTCAGAGGCTGCACAAAAGAGATGGACTACAAGCGATTTCGATATCGGAAAGCCACT 175 || |||||||||||||||||||||||||||||| ||||||||||| | |||||||| || Sbjct 60 GGTTTCAGAGGCTGCACAAAAGAGATGGACTACTAGCGATTTCGACGTTGGAAAGCCTCT 119 Query 176 TGGTAGAGGAAAGTTTGGCCATGTTTATCTAGCAAGAGAGAAACGGAGCGATCACATTGT 235 ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 120 TGGTAGAGGGAAGTTTGGCCATGTTTATCTAGCAAGAGAGAAACGGAGCAATCACATTGT 179 Query 236 GGCT-TTAAAGGTTCTTTTTAAGGCTCAGCTTCAACAATCTCAAGTTGAACACCAGTTAC 294 |||| || ||||||||||||||| ||||||||||||||||||||||||| ||||| |||| Sbjct 180 GGCTCTT-AAGGTTCTTTTTAAGACTCAGCTTCAACAATCTCAAGTTGAGCACCAATTAC 238 Query 295 GAAGGGAAGTAGAGATTCAATCTCATCTTCGGCATCCCAATATTCTGCGGCTCTACGGTT 354 ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 239 GAAGGGAAGTAGAGATTCAGTCTCATCTTCGGCATCCCAATATTCTGCGACTCTACGGTT 298 Query 355 ACTTCTATGATCAGAAAAGAGTTTATTTGATTTTGGAGTATGCTG-TAAGGGGTGAGCTT 413 |||||||||||||||||||||||||||||||||| |||||||| | | || ||||||||| Sbjct 299 ACTTCTATGATCAGAAAAGAGTTTATTTGATTTTAGAGTATGCAGCT-AGAGGTGAGCTT 357 Query 414 TATAAAGAGCTTCAGAAGTGCAAGTACTTCAGCGAACGTCGAGCAGCAACTTATGTTGCG 473 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 358 TATAAAGAGCTTCAGAAGTGCAAGTACTTCAGCGAACGTCGAGCAGCAACTTATGTTGCG 417 Query 474 TCATTGGCTAGAGCCCTCATCTATTGCCATGGAAAGCATGTAATTCACAGAGATATAAAA 533 |||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 418 TCATTGGCAAGAGCCCTCATCTATTGCCATGGAAAGCACGTTATTCACAGAGATATAAAG 477 Query 534 CCTGAAAATCTGTTGATTGGTGCTCAGGGTGAGCTCAAGATTGCAGATTTTGGATGGTCA 593 ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 478 CCTGAAAATCTATTGATTGGTGCTCAGGGTGAGCTCAAGATTGCAGACTTTGGATGGTCA 537 Query 594 GTACACACATTCAACCGTAGAAGGACTATGTGTGGCACTTTGGATTACCTTCCACCTGAG 653 ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 538 GTACACACATTCAACCGCAGAAGGACTATGTGTGGCACTTTGGATTACCTTCCGCCTGAG 597 Query 654 ATGGTGGAAAGCGTTGAACATGATGCGAGTGTCGATATATGGAGTCTAGGAATTCTCTGC 713 ||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 598 ATGGTCGAAAGCGTAGAACATGATGCAAGTGTGGATATATGGAGTCTAGGAATTCTCTGC 657 Query 714 TACGAATTTCTTTATGGTGTTCCTCCTTTTGAGGCCAGGGAGCATTCAGAGACATACAAA 773 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 658 TACGAATTTCTTTATGGTGTCCCTCCTTTTGAGGCCAGGGAGCATTCAGAGACATACAAA 717 Query 774 AGGATTGTTCAAGTGGATCTCAAGTTCCCTCCCAAACCCATTGTGTCATCATCTGCAAAG 833 |||||||| ||||||||||||||||||||||| ||||| |||||||| |||| ||||||| Sbjct 718 AGGATTGTCCAAGTGGATCTCAAGTTCCCTCCAAAACCTATTGTGTCTTCATATGCAAAG 777 Query 834 GACCTGATTAGCCAGATGTTGGTTAAGGAGTCTACGCAACGTTTGGCCTTGCACAAGCTT 893 ||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||| Sbjct 778 GACTTGATTAGCCAGATGCTGGTTAAGGAGTCTACACAACGTTTGGCCTTGCACAAGCTT 837 Query 894 CTTGAACACCCGTGGATTGTGCAAAACGCAGACCCATCAGGCCTTTACAGAGGATGAAGC 953 |||||||||||||||||||||||||||||||| || || ||| | |||||||| |||||| Sbjct 838 CTTGAACACCCGTGGATTGTGCAAAACGCAGATCCGTCGGGCATCTACAGAGGTTGAAGC 897 > Ahg320379 jgi|Araly1|320379|fgenesh1_pm.C_scaffold_4000436 Length=867 Score = 1358 bits (735), Expect = 0.0 Identities = 826/870 (95%), Gaps = 6/870 (1%) Strand=Plus/Plus Query 84 ATGGGGATTTCTACAGAGACGCAGCAAATTGCGGCTTCAGAGGCTGCACAAAAGAGATGG 143 |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| Sbjct 1 ATGGGGATTTCTACAGAGACGCAGCAAAACGCGGTTTCAGAGGCTGCACAAAAGAGATGG 60 Query 144 ACTACAAGCGATTTCGATATCGGAAAGCCACTTGGTAGAGGAAAGTTTGGCCATGTTTAT 203 ||||||||||||||||| || |||||||| ||||||||||| |||||||||||||||||| Sbjct 61 ACTACAAGCGATTTCGACATTGGAAAGCCTCTTGGTAGAGGGAAGTTTGGCCATGTTTAT 120 Query 204 CTAGCAAGAGAGAAACGGAGCGATCACATTGTGGCT-TTAAAGGTTCTTTTTAAGGCTCA 262 ||||||||||||||||||||| |||||||||||||| || ||||||||||||||| |||| Sbjct 121 CTAGCAAGAGAGAAACGGAGCAATCACATTGTGGCTCTT-AAGGTTCTTTTTAAGACTCA 179 Query 263 GCTTCAACAATCTCAAGTTGAACACCAG-TTACGAAGGGAAGTAGAGATTCAATCTCATC 321 |||||||||||||||||||||||||||| || || |||||||||| ||||||||||||| Sbjct 180 GCTTCAACAATCTCAAGTTGAACACCAGCTT-CGGCGGGAAGTAGAAATTCAATCTCATC 238 Query 322 TTCGGCATCCCAATATTCTGCGGCTCTACGGTTACTTCTATGATCAGAAAAGAGTTTATT 381 |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| Sbjct 239 TTCGGCATCCCAATATTCTGCGACTCTACGGTTACTTTTATGATCAGAAAAGAGTTTATT 298 Query 382 TGATTTTGGAGTATGCTG-TAAGGGGTGAGCTTTATAAAGAGCTTCAGAAGTGCAAGTAC 440 ||||||| |||||||| | | || |||||||||||||||||||||||||||||||||||| Sbjct 299 TGATTTTAGAGTATGCAGCT-AGAGGTGAGCTTTATAAAGAGCTTCAGAAGTGCAAGTAC 357 Query 441 TTCAGCGAACGTCGAGCAGCAACTTATGTTGCGTCATTGGCTAGAGCCCTCATCTATTGC 500 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 358 TTCAGCGAACGTCGAGCAGCAACTTATGTTGCGTCATTGGCAAGAGCCCTCATCTATTGC 417 Query 501 CATGGAAAGCATGTAATTCACAGAGATATAAAACCTGAAAATCTGTTGATTGGTGCTCAG 560 |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 418 CATGGAAAGCATGTAATTCACAGAGATATAAAGCCTGAAAATCTATTGATTGGTGCTCAG 477 Query 561 GGTGAGCTCAAGATTGCAGATTTTGGATGGTCAGTACACACATTCAACCGTAGAAGGACT 620 |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 478 GGTGAGCTCAAGATTGCAGACTTTGGATGGTCAGTACACACATTCAACCGCAGAAGGACT 537 Query 621 ATGTGTGGCACTTTGGATTACCTTCCACCTGAGATGGTGGAAAGCGTTGAACATGATGCG 680 |||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||| Sbjct 538 ATGTGTGGCACTTTGGATTACCTTCCGCCTGAGATGGTGGAAAGCGTAGAACACGATGCA 597 Query 681 AGTGTCGATATATGGAGTCTAGGAATTCTCTGCTACGAATTTCTTTATGGTGTTCCTCCT 740 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 598 AGTGTCGATATATGGAGTCTAGGAATTCTCTGCTACGAATTTCTTTATGGTGTCCCTCCT 657 Query 741 TTTGAGGCCAGGGAGCATTCAGAGACATACAAAAGGATTGTTCAAGTGGATCTCAAGTTC 800 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 658 TTTGAGGCCAGGGAACATTCAGAGACATACAAAAGGATTGTTCAAGTGGATCTCAAGTTC 717 Query 801 CCTCCCAAACCCATTGTGTCATCATCTGCAAAGGACCTGATTAGCCAGATGTTGGTTAAG 860 ||||||||||||||||| || |||| ||||||||||||||||||||||||| |||||||| Sbjct 718 CCTCCCAAACCCATTGTCTCTTCATATGCAAAGGACCTGATTAGCCAGATGCTGGTTAAG 777 Query 861 GAGTCTACGCAACGTTTGGCCTTGCACAAGCTTCTTGAACACCCGTGGATTGTGCAAAAC 920 |||||||| | ||||||| ||||||||||||||||||||||||| ||||||||||||||| Sbjct 778 GAGTCTACACGACGTTTGCCCTTGCACAAGCTTCTTGAACACCCATGGATTGTGCAAAAC 837 Query 921 GCAGACCCATCAGGCCTTTACAGAGGATGA 950 ||||||||||||||||| |||||||| ||| Sbjct 838 GCAGACCCATCAGGCCTCTACAGAGGTTGA 867 > Ahg944667 jgi|Araly1|944667|scaffold_700896.1 Length=914 Score = 865 bits (468), Expect = 0.0 Identities = 717/838 (86%), Gaps = 14/838 (2%) Strand=Plus/Plus Query 116 GGCTTCAGAGGCTGCACAAAAGAGATGGACTACAAGCGATTTCGATATCGGAAAGCCACT 175 ||||||||| ||||||||||||||||||||| |||||||||||| ||||| ||||| || Sbjct 59 GGCTTCAGATGCTGCACAAAAGAGATGGACTTTAAGCGATTTCGACATCGGTAAGCCTCT 118 Query 176 TGGTAGAGGAAAGTTTGGCCATGTTTATCTAGCAAGAGAGAAACGGAGCGATCACATTGT 235 ||| |||||||| || || || || ||||| || ||||| ||||||||| |||||||||| Sbjct 119 TGGCAGAGGAAAATTCGGTCACGTCTATCTCGCCAGAGAAAAACGGAGCAATCACATTGT 178 Query 236 GGCTTTAAAGGTTCTTTTTAAG-GCTCAGCTTCAACAATCTCAAGTTGAACACCAGTTAC 294 ||| ||||||||||||| ||| || |||||||||||||| ||||||||||| ||| | | Sbjct 179 CGCTCTAAAGGTTCTTTTCAAGAGC-CAGCTTCAACAATCCCAAGTTGAACATCAGCTCC 237 Query 295 GAAGGGAAGTAGAGATTCAATCTCATCTTCGGCATCCCAATATTCTGCGGCTCTACGGTT 354 |||| ||||| ||||| || ||||||||||| || ||||| || || ||||| || || | Sbjct 238 GAAGAGAAGTTGAGATCCAGTCTCATCTTCGACACCCCAACATACTCCGGCTTTATGGCT 297 Query 355 ACTTCTATGATCAGAAAAGAGTTTATTTGAT-TTTGGAGTATGCTG-TAAGGGGTGAGCT 412 | ||||||||||| ||||||||||||||||| || |||||||||| | || || || || Sbjct 298 ATTTCTATGATCAAAAAAGAGTTTATTTGATACTT-GAGTATGCTGCT-AGAGGCGAACT 355 Query 413 TTATAAAGAGCTTCAGAAGTGCAAGTACTTCAGCGA-ACGTCGAGCAGCAACTTATGTTG 471 ||| || || |||||||| ||||| ||||||||||| | | ||||| ||||| ||||||| Sbjct 356 TTACAAGGAACTTCAGAAATGCAAATACTTCAGCGAGA-GACGAGCTGCAACATATGTTG 414 Query 472 CGTCATTGGCTAGAGCCCTCATCTATTGCCATGGAAAGCATGTAATTCACAGAGATATAA 531 |||||||||| || || ||||| ||||||||||| |||||||| || ||||||||||| | Sbjct 415 CGTCATTGGCGAGGGCTCTCATATATTGCCATGGCAAGCATGTGATACACAGAGATATTA 474 Query 532 AACCTGAAAATCTGTTGATTGGTGCTCAGGGTGAGCTCAAGATTGCAGATTTTGGATGGT 591 |||| || |||||||| |||||||||||||||||||||||||||||||| ||||| |||| Sbjct 475 AACCAGAGAATCTGTTAATTGGTGCTCAGGGTGAGCTCAAGATTGCAGACTTTGGTTGGT 534 Query 592 CAGTACACACATTCAACCGTAGAAGGACTATGTGTGGCACTTTGGATTACCTTCCACCTG 651 | ||||||||||| ||||| |||||||| ||||||||||| | ||||||||||| |||| Sbjct 535 CGGTACACACATTTAACCGCAGAAGGACGATGTGTGGCACACTAGATTACCTTCCTCCTG 594 Query 652 AGATGGTGGAAAGCGTTGAACATGATGCGAGTGTCGATATATGGAGTCTAGGAATTCTCT 711 | ||||| |||||||| ||||||||||| ||||| ||||| ||||| || || ||||||| Sbjct 595 AAATGGTCGAAAGCGTAGAACATGATGCTAGTGTAGATATCTGGAGCCTTGGGATTCTCT 654 Query 712 GCTACGAATTTCTTTATGGTGTTCCTCCTTTTGAGGCCAGGGAGCATTCAGAGACATACA 771 | ||||| |||||||||||||| ||||||||||| |||| |||||| ||||| ||||||| Sbjct 655 GTTACGAGTTTCTTTATGGTGTACCTCCTTTTGAAGCCATGGAGCACTCAGACACATACA 714 Query 772 AAAGGATTGTTCAAGTGGATCTCAAGTTCCCTCCCAAACCCATTGTGTCAT-CATCTGCA 830 ||||||||| ||||||||||| ||||||||||||||||| ||||| || | |||||||| Sbjct 715 GAAGGATTGTGCAAGTGGATCTTAAGTTCCCTCCCAAACCAATTGTCTC-TGCATCTGCA 773 Query 831 AAGGACCTGATTAGCCAGATG-TTGGTTAAGGAGTCTACGCAACGTTTGGCC-TTGCACA 888 ||||| || |||||||||||| ||| | ||||||||| | |||||| || || ||||||| Sbjct 774 AAGGATCTCATTAGCCAGATGCTTG-TCAAGGAGTCTTCCCAACGTCTG-CCATTGCACA 831 Query 889 AGCTTCTTGAACACCCGTGGATTGTGCAAAACGCAGACCCATCAGGCCTTTACAGAGG 946 ||||||| || || |||||||||||||||||||| || || || || | |||||||| Sbjct 832 AGCTTCTGGAGCATCCGTGGATTGTGCAAAACGCTGATCCTTCCGGAATATACAGAGG 889 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44222583720 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5