BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25880.1
Length=1185
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481442 jgi|Araly1|481442|fgenesh2_kg.4__502__AT2G25880.1 1375 0.0
Ahg320379 jgi|Araly1|320379|fgenesh1_pm.C_scaffold_4000436 1358 0.0
Ahg944667 jgi|Araly1|944667|scaffold_700896.1 865 0.0
> Ahg481442 jgi|Araly1|481442|fgenesh2_kg.4__502__AT2G25880.1
Length=970
Score = 1375 bits (744), Expect = 0.0
Identities = 849/900 (94%), Gaps = 6/900 (1%)
Strand=Plus/Plus
Query 57 TATCTT-GGCTCATCAACGATCTCTTCCATGGGGATTTCTACAGAGACGCAGCAAATTGC 115
|||||| || |||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 TATCTTAGG-TCATCATCGATCTCTTCCATGGGGATTTCTACAGAGACGCAGCAAAATGC 59
Query 116 GGCTTCAGAGGCTGCACAAAAGAGATGGACTACAAGCGATTTCGATATCGGAAAGCCACT 175
|| |||||||||||||||||||||||||||||| ||||||||||| | |||||||| ||
Sbjct 60 GGTTTCAGAGGCTGCACAAAAGAGATGGACTACTAGCGATTTCGACGTTGGAAAGCCTCT 119
Query 176 TGGTAGAGGAAAGTTTGGCCATGTTTATCTAGCAAGAGAGAAACGGAGCGATCACATTGT 235
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 120 TGGTAGAGGGAAGTTTGGCCATGTTTATCTAGCAAGAGAGAAACGGAGCAATCACATTGT 179
Query 236 GGCT-TTAAAGGTTCTTTTTAAGGCTCAGCTTCAACAATCTCAAGTTGAACACCAGTTAC 294
|||| || ||||||||||||||| ||||||||||||||||||||||||| ||||| ||||
Sbjct 180 GGCTCTT-AAGGTTCTTTTTAAGACTCAGCTTCAACAATCTCAAGTTGAGCACCAATTAC 238
Query 295 GAAGGGAAGTAGAGATTCAATCTCATCTTCGGCATCCCAATATTCTGCGGCTCTACGGTT 354
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 239 GAAGGGAAGTAGAGATTCAGTCTCATCTTCGGCATCCCAATATTCTGCGACTCTACGGTT 298
Query 355 ACTTCTATGATCAGAAAAGAGTTTATTTGATTTTGGAGTATGCTG-TAAGGGGTGAGCTT 413
|||||||||||||||||||||||||||||||||| |||||||| | | || |||||||||
Sbjct 299 ACTTCTATGATCAGAAAAGAGTTTATTTGATTTTAGAGTATGCAGCT-AGAGGTGAGCTT 357
Query 414 TATAAAGAGCTTCAGAAGTGCAAGTACTTCAGCGAACGTCGAGCAGCAACTTATGTTGCG 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TATAAAGAGCTTCAGAAGTGCAAGTACTTCAGCGAACGTCGAGCAGCAACTTATGTTGCG 417
Query 474 TCATTGGCTAGAGCCCTCATCTATTGCCATGGAAAGCATGTAATTCACAGAGATATAAAA 533
|||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 418 TCATTGGCAAGAGCCCTCATCTATTGCCATGGAAAGCACGTTATTCACAGAGATATAAAG 477
Query 534 CCTGAAAATCTGTTGATTGGTGCTCAGGGTGAGCTCAAGATTGCAGATTTTGGATGGTCA 593
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 478 CCTGAAAATCTATTGATTGGTGCTCAGGGTGAGCTCAAGATTGCAGACTTTGGATGGTCA 537
Query 594 GTACACACATTCAACCGTAGAAGGACTATGTGTGGCACTTTGGATTACCTTCCACCTGAG 653
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 538 GTACACACATTCAACCGCAGAAGGACTATGTGTGGCACTTTGGATTACCTTCCGCCTGAG 597
Query 654 ATGGTGGAAAGCGTTGAACATGATGCGAGTGTCGATATATGGAGTCTAGGAATTCTCTGC 713
||||| |||||||| ||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 598 ATGGTCGAAAGCGTAGAACATGATGCAAGTGTGGATATATGGAGTCTAGGAATTCTCTGC 657
Query 714 TACGAATTTCTTTATGGTGTTCCTCCTTTTGAGGCCAGGGAGCATTCAGAGACATACAAA 773
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 658 TACGAATTTCTTTATGGTGTCCCTCCTTTTGAGGCCAGGGAGCATTCAGAGACATACAAA 717
Query 774 AGGATTGTTCAAGTGGATCTCAAGTTCCCTCCCAAACCCATTGTGTCATCATCTGCAAAG 833
|||||||| ||||||||||||||||||||||| ||||| |||||||| |||| |||||||
Sbjct 718 AGGATTGTCCAAGTGGATCTCAAGTTCCCTCCAAAACCTATTGTGTCTTCATATGCAAAG 777
Query 834 GACCTGATTAGCCAGATGTTGGTTAAGGAGTCTACGCAACGTTTGGCCTTGCACAAGCTT 893
||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 778 GACTTGATTAGCCAGATGCTGGTTAAGGAGTCTACACAACGTTTGGCCTTGCACAAGCTT 837
Query 894 CTTGAACACCCGTGGATTGTGCAAAACGCAGACCCATCAGGCCTTTACAGAGGATGAAGC 953
|||||||||||||||||||||||||||||||| || || ||| | |||||||| ||||||
Sbjct 838 CTTGAACACCCGTGGATTGTGCAAAACGCAGATCCGTCGGGCATCTACAGAGGTTGAAGC 897
> Ahg320379 jgi|Araly1|320379|fgenesh1_pm.C_scaffold_4000436
Length=867
Score = 1358 bits (735), Expect = 0.0
Identities = 826/870 (95%), Gaps = 6/870 (1%)
Strand=Plus/Plus
Query 84 ATGGGGATTTCTACAGAGACGCAGCAAATTGCGGCTTCAGAGGCTGCACAAAAGAGATGG 143
|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 1 ATGGGGATTTCTACAGAGACGCAGCAAAACGCGGTTTCAGAGGCTGCACAAAAGAGATGG 60
Query 144 ACTACAAGCGATTTCGATATCGGAAAGCCACTTGGTAGAGGAAAGTTTGGCCATGTTTAT 203
||||||||||||||||| || |||||||| ||||||||||| ||||||||||||||||||
Sbjct 61 ACTACAAGCGATTTCGACATTGGAAAGCCTCTTGGTAGAGGGAAGTTTGGCCATGTTTAT 120
Query 204 CTAGCAAGAGAGAAACGGAGCGATCACATTGTGGCT-TTAAAGGTTCTTTTTAAGGCTCA 262
||||||||||||||||||||| |||||||||||||| || ||||||||||||||| ||||
Sbjct 121 CTAGCAAGAGAGAAACGGAGCAATCACATTGTGGCTCTT-AAGGTTCTTTTTAAGACTCA 179
Query 263 GCTTCAACAATCTCAAGTTGAACACCAG-TTACGAAGGGAAGTAGAGATTCAATCTCATC 321
|||||||||||||||||||||||||||| || || |||||||||| |||||||||||||
Sbjct 180 GCTTCAACAATCTCAAGTTGAACACCAGCTT-CGGCGGGAAGTAGAAATTCAATCTCATC 238
Query 322 TTCGGCATCCCAATATTCTGCGGCTCTACGGTTACTTCTATGATCAGAAAAGAGTTTATT 381
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 239 TTCGGCATCCCAATATTCTGCGACTCTACGGTTACTTTTATGATCAGAAAAGAGTTTATT 298
Query 382 TGATTTTGGAGTATGCTG-TAAGGGGTGAGCTTTATAAAGAGCTTCAGAAGTGCAAGTAC 440
||||||| |||||||| | | || ||||||||||||||||||||||||||||||||||||
Sbjct 299 TGATTTTAGAGTATGCAGCT-AGAGGTGAGCTTTATAAAGAGCTTCAGAAGTGCAAGTAC 357
Query 441 TTCAGCGAACGTCGAGCAGCAACTTATGTTGCGTCATTGGCTAGAGCCCTCATCTATTGC 500
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 358 TTCAGCGAACGTCGAGCAGCAACTTATGTTGCGTCATTGGCAAGAGCCCTCATCTATTGC 417
Query 501 CATGGAAAGCATGTAATTCACAGAGATATAAAACCTGAAAATCTGTTGATTGGTGCTCAG 560
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 418 CATGGAAAGCATGTAATTCACAGAGATATAAAGCCTGAAAATCTATTGATTGGTGCTCAG 477
Query 561 GGTGAGCTCAAGATTGCAGATTTTGGATGGTCAGTACACACATTCAACCGTAGAAGGACT 620
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 478 GGTGAGCTCAAGATTGCAGACTTTGGATGGTCAGTACACACATTCAACCGCAGAAGGACT 537
Query 621 ATGTGTGGCACTTTGGATTACCTTCCACCTGAGATGGTGGAAAGCGTTGAACATGATGCG 680
|||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||
Sbjct 538 ATGTGTGGCACTTTGGATTACCTTCCGCCTGAGATGGTGGAAAGCGTAGAACACGATGCA 597
Query 681 AGTGTCGATATATGGAGTCTAGGAATTCTCTGCTACGAATTTCTTTATGGTGTTCCTCCT 740
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 598 AGTGTCGATATATGGAGTCTAGGAATTCTCTGCTACGAATTTCTTTATGGTGTCCCTCCT 657
Query 741 TTTGAGGCCAGGGAGCATTCAGAGACATACAAAAGGATTGTTCAAGTGGATCTCAAGTTC 800
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 TTTGAGGCCAGGGAACATTCAGAGACATACAAAAGGATTGTTCAAGTGGATCTCAAGTTC 717
Query 801 CCTCCCAAACCCATTGTGTCATCATCTGCAAAGGACCTGATTAGCCAGATGTTGGTTAAG 860
||||||||||||||||| || |||| ||||||||||||||||||||||||| ||||||||
Sbjct 718 CCTCCCAAACCCATTGTCTCTTCATATGCAAAGGACCTGATTAGCCAGATGCTGGTTAAG 777
Query 861 GAGTCTACGCAACGTTTGGCCTTGCACAAGCTTCTTGAACACCCGTGGATTGTGCAAAAC 920
|||||||| | ||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 778 GAGTCTACACGACGTTTGCCCTTGCACAAGCTTCTTGAACACCCATGGATTGTGCAAAAC 837
Query 921 GCAGACCCATCAGGCCTTTACAGAGGATGA 950
||||||||||||||||| |||||||| |||
Sbjct 838 GCAGACCCATCAGGCCTCTACAGAGGTTGA 867
> Ahg944667 jgi|Araly1|944667|scaffold_700896.1
Length=914
Score = 865 bits (468), Expect = 0.0
Identities = 717/838 (86%), Gaps = 14/838 (2%)
Strand=Plus/Plus
Query 116 GGCTTCAGAGGCTGCACAAAAGAGATGGACTACAAGCGATTTCGATATCGGAAAGCCACT 175
||||||||| ||||||||||||||||||||| |||||||||||| ||||| ||||| ||
Sbjct 59 GGCTTCAGATGCTGCACAAAAGAGATGGACTTTAAGCGATTTCGACATCGGTAAGCCTCT 118
Query 176 TGGTAGAGGAAAGTTTGGCCATGTTTATCTAGCAAGAGAGAAACGGAGCGATCACATTGT 235
||| |||||||| || || || || ||||| || ||||| ||||||||| ||||||||||
Sbjct 119 TGGCAGAGGAAAATTCGGTCACGTCTATCTCGCCAGAGAAAAACGGAGCAATCACATTGT 178
Query 236 GGCTTTAAAGGTTCTTTTTAAG-GCTCAGCTTCAACAATCTCAAGTTGAACACCAGTTAC 294
||| ||||||||||||| ||| || |||||||||||||| ||||||||||| ||| | |
Sbjct 179 CGCTCTAAAGGTTCTTTTCAAGAGC-CAGCTTCAACAATCCCAAGTTGAACATCAGCTCC 237
Query 295 GAAGGGAAGTAGAGATTCAATCTCATCTTCGGCATCCCAATATTCTGCGGCTCTACGGTT 354
|||| ||||| ||||| || ||||||||||| || ||||| || || ||||| || || |
Sbjct 238 GAAGAGAAGTTGAGATCCAGTCTCATCTTCGACACCCCAACATACTCCGGCTTTATGGCT 297
Query 355 ACTTCTATGATCAGAAAAGAGTTTATTTGAT-TTTGGAGTATGCTG-TAAGGGGTGAGCT 412
| ||||||||||| ||||||||||||||||| || |||||||||| | || || || ||
Sbjct 298 ATTTCTATGATCAAAAAAGAGTTTATTTGATACTT-GAGTATGCTGCT-AGAGGCGAACT 355
Query 413 TTATAAAGAGCTTCAGAAGTGCAAGTACTTCAGCGA-ACGTCGAGCAGCAACTTATGTTG 471
||| || || |||||||| ||||| ||||||||||| | | ||||| ||||| |||||||
Sbjct 356 TTACAAGGAACTTCAGAAATGCAAATACTTCAGCGAGA-GACGAGCTGCAACATATGTTG 414
Query 472 CGTCATTGGCTAGAGCCCTCATCTATTGCCATGGAAAGCATGTAATTCACAGAGATATAA 531
|||||||||| || || ||||| ||||||||||| |||||||| || ||||||||||| |
Sbjct 415 CGTCATTGGCGAGGGCTCTCATATATTGCCATGGCAAGCATGTGATACACAGAGATATTA 474
Query 532 AACCTGAAAATCTGTTGATTGGTGCTCAGGGTGAGCTCAAGATTGCAGATTTTGGATGGT 591
|||| || |||||||| |||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 475 AACCAGAGAATCTGTTAATTGGTGCTCAGGGTGAGCTCAAGATTGCAGACTTTGGTTGGT 534
Query 592 CAGTACACACATTCAACCGTAGAAGGACTATGTGTGGCACTTTGGATTACCTTCCACCTG 651
| ||||||||||| ||||| |||||||| ||||||||||| | ||||||||||| ||||
Sbjct 535 CGGTACACACATTTAACCGCAGAAGGACGATGTGTGGCACACTAGATTACCTTCCTCCTG 594
Query 652 AGATGGTGGAAAGCGTTGAACATGATGCGAGTGTCGATATATGGAGTCTAGGAATTCTCT 711
| ||||| |||||||| ||||||||||| ||||| ||||| ||||| || || |||||||
Sbjct 595 AAATGGTCGAAAGCGTAGAACATGATGCTAGTGTAGATATCTGGAGCCTTGGGATTCTCT 654
Query 712 GCTACGAATTTCTTTATGGTGTTCCTCCTTTTGAGGCCAGGGAGCATTCAGAGACATACA 771
| ||||| |||||||||||||| ||||||||||| |||| |||||| ||||| |||||||
Sbjct 655 GTTACGAGTTTCTTTATGGTGTACCTCCTTTTGAAGCCATGGAGCACTCAGACACATACA 714
Query 772 AAAGGATTGTTCAAGTGGATCTCAAGTTCCCTCCCAAACCCATTGTGTCAT-CATCTGCA 830
||||||||| ||||||||||| ||||||||||||||||| ||||| || | ||||||||
Sbjct 715 GAAGGATTGTGCAAGTGGATCTTAAGTTCCCTCCCAAACCAATTGTCTC-TGCATCTGCA 773
Query 831 AAGGACCTGATTAGCCAGATG-TTGGTTAAGGAGTCTACGCAACGTTTGGCC-TTGCACA 888
||||| || |||||||||||| ||| | ||||||||| | |||||| || || |||||||
Sbjct 774 AAGGATCTCATTAGCCAGATGCTTG-TCAAGGAGTCTTCCCAACGTCTG-CCATTGCACA 831
Query 889 AGCTTCTTGAACACCCGTGGATTGTGCAAAACGCAGACCCATCAGGCCTTTACAGAGG 946
||||||| || || |||||||||||||||||||| || || || || | ||||||||
Sbjct 832 AGCTTCTGGAGCATCCGTGGATTGTGCAAAACGCTGATCCTTCCGGAATATACAGAGG 889
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44222583720
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5