BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G25890.1

Length=747
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg932778 jgi|Araly1|932778|scaffold_400766.1                        664    0.0  


> Ahg932778 jgi|Araly1|932778|scaffold_400766.1
Length=472

 Score =  664 bits (359),  Expect = 0.0
 Identities = 415/443 (94%), Gaps = 0/443 (0%)
 Strand=Plus/Plus

Query  83   CAACAACAACCAATAATGAGGAGTCTCCATGAATCATCACCATCGACTCGGCAGATAGTG  142
            ||||||||||||||||||| || ||||||  |||||||||||||||| ||||||||||||
Sbjct  30   CAACAACAACCAATAATGAAGAATCTCCACAAATCATCACCATCGACACGGCAGATAGTG  89

Query  143  AGATTCGTAACGGCAGCTACGATCGGCCTATCACTCCTCGTGCTCTCAGGACTAACACTA  202
            |||||| |||| ||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct  90   AGATTCCTAACCGCAGCAACGATCGGCCTATCACTCCTGGTGCTCTCAGGACTAACACTA  149

Query  203  ACCGGAACGGTGATCGGTTTGATCGTAGCGACGCCGTTGATGGTTCTGTTCAGCCCGGTG  262
            |||||||||||||| |||||| |||||||||||||| | |||||| | ||||||||||||
Sbjct  150  ACCGGAACGGTGATTGGTTTGGTCGTAGCGACGCCGCTAATGGTTTTATTCAGCCCGGTG  209

Query  263  TTGGTACCGGCAGTGATAACGATAGGGCTTTTGACGATGGGATTCCTATTCTCCGGTGGT  322
            ||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct  210  TTGGTGCCGGCGGTGATAACGATGGGGCTTTTGACGATGGGATTCCTATTCTCTGGTGGT  269

Query  323  TGTGGGGTGGCAGCAGCTACGGCGTTAACGTGGATTTATAAGTACGTTACCGGAAAACAC  382
            ||||| ||||| ||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct  270  TGTGGTGTGGCGGCAGCGACGGCGTTAACGTGGATTTATAAGTACGTTTCCGGAAAACAC  329

Query  383  CCGATGGGAGCGGATAAGGTGGATTACGCGAGGATGAGGATAGCGGAGAAAGCCAAAGAG  442
            ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct  330  CCGATGGGAGCGGATAAAGTGGATTACGCCAGGATGAGGATAGCGGAGAAAGCCAAAGAG  389

Query  443  TTGGGACATTATACGCACTCGCAGCCACAACAAACACACCAAACCACAACAACTACTCAT  502
            |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  390  TTGGGACATTATGCGCAGTCGCAGCCACAACAAACACACCAAACCACAACAACTACTCAT  449

Query  503  TAGAGTTTAATAATTATATGGAT  525
            |||||||||||||| ||||||||
Sbjct  450  TAGAGTTTAATAATAATATGGAT  472



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27524746074


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5