BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25900.1
Length=1787
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481444 jgi|Araly1|481444|fgenesh2_kg.4__504__AT2G25900.1 1637 0.0
> Ahg481444 jgi|Araly1|481444|fgenesh2_kg.4__504__AT2G25900.1
Length=1284
Score = 1637 bits (886), Expect = 0.0
Identities = 1040/1110 (94%), Gaps = 28/1110 (3%)
Strand=Plus/Plus
Query 296 AACTTTACCGTAGTTAATATTTGACCCAACCATGGTTAAAATAAAGCAGTTTATATCACA 355
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1 AACTTTACCGTAGTTAATA-TTGACCCAACCATGGTTAAAATAAAGCAGTTTATAACACA 59
Query 356 GACACACACCTCTCTC-TCTTCTAGACTCACT-A-AACAAAAATGATGATCGGCGAAAAT 412
|| |||||| |||||| || |||||||||||| | |||||||||||||||||| ||||||
Sbjct 60 GAAACACACTTCTCTCATC-TCTAGACTCACTCACAACAAAAATGATGATCGGAGAAAAT 118
Query 413 AAAAACCGGCCACATCCAACGATCCATATCCCTCAATGGGATCAAATCAACGATCCAACG 472
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 AATAACCGGCCACATCCGACGATCCATATCCCTCAATGGGATCAAATCAACGATCCAACG 178
Query 473 GCCACAATCTCTTCACCATTCTCTTCCGTCAAC-CTTAACAGCGTTAACGACTACCCACA 531
| ||||||||||||||||||| ||||||||||| | ||| |||||||||||||||||||
Sbjct 179 GTCACAATCTCTTCACCATTCACTTCCGTCAACAC-AAACGGCGTTAACGACTACCCACA 237
Query 532 CTCTCCGTCACCGTATCTCGACTCCTTCGCTTCTCTCTTCCGTTACCTCCCGTCAAACGA 591
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 238 CTCTCCGTCACCGTACCTCGAATCCTTCGCTTCTCTCTTCCGTTACCTCCCGTCAAACGA 297
Query 592 GTTAACAAACGATTCAGACTCATCAAGTGGCGACGAGTCATCACCACTCACCGACTCATT 651
||||||||||||||| ||||||||||| || |||||||||||| ||||||||||||| ||
Sbjct 298 GTTAACAAACGATTCCGACTCATCAAGCGGAGACGAGTCATCATCACTCACCGACTCGTT 357
Query 652 CTCCTCCGACGAGTTTCGCATCTACGAGTTCAAAATCCGGCGATGCGCTCGAGGTCGATC 711
||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 358 CTCCTCCGACGAGTTTCGCATGTACGAGTTCAAAATCCGGCGATGCGCTCGAGACCGATC 417
Query 712 TCATGATTGGACGGAGTGTCCGTTCGCACATCCCGGAGAAAAAGCTCGACGACGTGATCC 771
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 418 TCATGATTGGACGGAGTGTCCGTTTGCACATCCCGGAGAAAAAGCTCGCCGACGTGATCC 477
Query 772 GAGAAAGTTTCATTACTCCGGCACCGCTTGTCCTGAGTTTCGTAAAGGAAGTTGTAGAAG 831
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 478 AAGGAAGTTTCATTACTCCGGCACCGCTTGTCCTGAGTTTCGAAAAGGAAGTTGTAGAAG 537
Query 832 AGGTGATTCGTGTGAGTTCTCTCATGGAGTTTTCGAGTGTTGGCTCCATCCTTCTCGTTA 891
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 538 AGGTGATTCGTGTGAGTTCGCTCATGGAGTTTTCGAGTGTTGGCTTCATCCTTCTCGTTA 597
Query 892 CCGTACTCAGCCGTGTAAAGACGGAACTAGCTGCCGGAGAAGAATCTGTTTCTTCGCTCA 951
|||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||
Sbjct 598 TCGTACTCAGCCGTGTAAAGACGGAACGAGTTGCCGGAGAAGGATCTGTTTCTTCGCTCA 657
Query 952 TACGACGGAGCAGTTACGTGTATTACCTTGTTCGTTAGATCCAGATCTTGGATTCTTCTC 1011
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 658 TACGACGGAGCAGTTACGAGTTTTACCTTGTTCGTTAGATCCAGATCTTGGATTCTTCTC 717
Query 1012 AGGATTAGCTACTTCTCCGACTTCGATTCTTGTTTCTCCTTCGTTTTCACCACCGTCGGA 1071
| | | |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 718 A---TC-G--ACTTCTCCGACTTCGATTCTTGTTTCTCCTTCGTTTTCTCCACCGTCGGA 771
Query 1072 ATCTCCGCCGCTTTCTCCGAGTACCGGTGAACTTATTGCGTCGATGAGGAAAATGCAATT 1131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 ATCTCCGCCGCTTTCTCCGAGTACCGGTGAACTTATTGCGTCGATGAGGAAAATGCAATT 831
Query 1132 GAACGGAGGTGGTTGTTCGTGGAGTTCT-C-C-GATGAGATCTGCAGTTAGGTTACCTTT 1188
|||||||||||||| | ||||||||| | | | ||||||||| |||||||||||||||
Sbjct 832 GAACGGAGGTGGTTC--C-TGGAGTTCTTCTCCGGTGAGATCTGGAGTTAGGTTACCTTT 888
Query 1189 TTCGTCGTCTCTGCGTCCGATTCAGGCGGCA-ACGTGGCCGAGGATAAGAGAGTTTGAGA 1247
|||||||||| ||||||||||||||||| || ||||||||||| ||||||||||||||||
Sbjct 889 TTCGTCGTCTTTGCGTCCGATTCAGGCG-CAGACGTGGCCGAGAATAAGAGAGTTTGAGA 947
Query 1248 TCGAAGAAGCTCCGGCGATGGAATTTGTGGAATCTGGGAAAGAGCTGAGAGCGGAGATGT 1307
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 948 TCGAAGAAGCTCCGGCGATGGAGTTTGTGGAATCTGGGAAAGAGCTGAGAGCGGAGATGT 1007
Query 1308 ATGCAAGACTCAGTAGAGAGAACTCACTCGGTTGAGTCGACTTGG--A-TCG----AGTC 1360
|||||||||||||||||||||||||||||||||||||||||| || | ||| ||||
Sbjct 1008 ATGCAAGACTCAGTAGAGAGAACTCACTCGGTTGAGTCGACTCGGCGACTCGGTCGAGTC 1067
Query 1361 TTTGATGACGTGGCGACTCGATCTGATTTT 1390
||||||||||||||||||||||||||||||
Sbjct 1068 TTTGATGACGTGGCGACTCGATCTGATTTT 1097
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67076921445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5