BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25910.2
Length=1422
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481448 jgi|Araly1|481448|fgenesh2_kg.4__508__AT2G25910.2 1982 0.0
> Ahg481448 jgi|Araly1|481448|fgenesh2_kg.4__508__AT2G25910.2
Length=1231
Score = 1982 bits (1073), Expect = 0.0
Identities = 1182/1235 (96%), Gaps = 5/1235 (0%)
Strand=Plus/Plus
Query 2 TCCGTTGGTGAATCTGGACAGTCCCCTCAAATAAAAGTTGTGAGAGCTGTTTCGTCGCTT 61
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||
Sbjct 1 TCCGTTGGTGAATCTGGACAGTCCCCTCAAATAAAACTTGTGAGAGCTGCTTCGTTGCTT 60
Query 62 TGATCGAAATGGCGTCGTCTTCTCCAACTCAGCTAGCTCACGTCCCGATTCCTCCAGAAC 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 61 TGATCGAAATGGCGTCGTCTTCTCCAACTCAGCTAGCTCACGTCCCGATTCCTCCTGAAC 120
Query 122 CAGGAGGAAGGTCGCCGACACAAGAAGCTAATGAGCCACCAGTTCCGATTTACATTGTGA 181
|||| |||||||| | ||||||||||||||||||||||| |||||||||| | || ||||
Sbjct 121 CAGGGGGAAGGTCACTGACACAAGAAGCTAATGAGCCACAAGTTCCGATTCATATAGTGA 180
Query 182 CGGATCCGTTT-CAACTTCCTGCTGATTTCCTAAACCCTTCTCCTGAAAAGAAATTGGTT 240
||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CGGATCC-TTTGCAACTTCCTGCTGATTTCCTAAACCCTTCTCCTGAAAAGAAATTGGTC 239
Query 241 ATCGGTTTTGACTGTGAGGGTGTTGACCTCTGCCGACATGGGAAACTTTGTATCATGCAG 300
|| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 240 ATTGGTTTTGACTGTGAGGGTGTTGACCTCTGTCGACATGGAAAACTTTGTATCATGCAG 299
Query 301 ATTGCATTCTCTAATGCAATATACTTGGTTGATGTCATCGAAGGTGGAGAGGTGATTATG 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 300 ATTGCATTCTCTAATGCAATATACTTGGTTGATGTCATCGAAGGTGGAGAGGTGCTTATG 359
Query 361 AAAGCGTGTAAGCCTGCACTCGAGTCTAATTACATCACGAAAGTTATTCACGATTGCAAG 420
||||| |||||||||||||||||||| | ||||||||| ||||||||||||||||||||
Sbjct 360 AAAGCCTGTAAGCCTGCACTCGAGTCGACTTACATCACAAAAGTTATTCACGATTGCAAA 419
Query 421 CGTGACAGTGAGGCTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACT 480
||||| ||||||||| ||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 420 CGTGATAGTGAGGCTTTATACTTTCAGTTTGGGATAAGGTTGCACAATGTTGTGGACACT 479
Query 481 CAGATTGCTTATTCTCTGATTGAAGAACAAGAAGGGCGGAGGAGACCTCTAGATGATTAC 540
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 480 CAGATTGCTTATTCTCTGATTGAAGAACAAGAAGGGAGGAGGAGACCTCTAGATGATTAC 539
Query 541 ATATCGTTTGTTTCACTCCTTGCTGATCCACGTTACTGCGGTATATCCTATGAAGAGAAA 600
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 540 ATATCGTTTGTTTCACTCCTTGCTGATCCACGTTACTGCGGTATATCTTATGAAGAGAAA 599
Query 601 GAAGAAGTTCGAGTTCTCATGCGCCAGGACCCAAAGTTTTGGACATACAGGCCTATGACT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 600 GAAGAAGTTCGAGTTCTCATGCGCCAGGACCCAAAGTTTTGGACATACAGGCCGATGACT 659
Query 661 GAGCTCATGATCCGCGCAGCTGCTGATGATGTCCGCTTCCTTCTGTATCTCTATCACAAA 720
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 660 GAGCTCATGATCCGCGCAGCTGCCGATGATGTCCGCTTCCTTCTGTATCTCTATCACAAA 719
Query 721 ATGATGGGAAAGCTAAATCAGCGGTCACTATGGCATCTTGCAGTTCGTGGTGCTTTGTAC 780
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 ATGATGGGAAAACTAAATCAGCGGTCACTATGGCATCTTGCAGTTCGTGGTGCTTTGTAC 779
Query 781 TGTCGGTGTCTCTGCTGCATGAATGATGCTGATTTTGCTGATTGGCCAACCGTTCCTCCA 840
||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||
Sbjct 780 TGTCGGTGTCTCTGCTGCATGAACGATGCTGATTTTGCTGATTGGCCAACTGTCCCTCCA 839
Query 841 ATTCCAGATAACCTGAAGTCAGAAGATCAATGTCTTGAAGAAGAGATCCTGTCAGTGCTT 900
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||
Sbjct 840 ATTCCAGATAACCTGAAATCAGAAGATCAATGTCTGGAAGAAGAGATCCTGTCAGTTCTT 899
Query 901 GATGTTCCACCAGGAAAGATGGGACGTGTGATTGGAAGGAAAGGAGCATCGATCCTCGCC 960
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 900 GATGTTCCACCAGGAAAGATGGGACGTGTGATTGGAAGGAAAGGAGCATCAATCCTCGCC 959
Query 961 ATTAAGGAAGCTTGCAACAGCGCGGAAATTCTAATTGGAGGGGCAAAGGGTCCACCTGAT 1020
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 ATCAAGGAAGCTTGCAACAGCGCGGAAATTCTAATTGGAGGGGCAAAGGGTCCACCTGAC 1019
Query 1021 AAGATATTTGTGATTGGACCGGTGAGAGAAGTGCGTAAGGCGGAGGCTATACTGAGAGGA 1080
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1020 AAGATATTTGTGATTGGACCGGTGAAAGAAGTGCGTAAGGCGGAGGCTATACTGAGAGGA 1079
Query 1081 AGAATGATAGACTATTGAAGGAAATGAGGGTCCTTTGTAATCTGTCTCATTGCCCCTATa 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 AGAATGATAGACTATTGAAGGAAATGAGGGTCCTTTGTAATCTGTCTCATTGCCCCTACC 1139
Query 1141 aaaaaaaaTACTAAAACCCTCTTAAAACTTGGAAACTCCATGGTTCAGTACGGACCCGAG 1200
||||| ||||||||||||||| ||||||||||||| |||||||||||| |||||||||
Sbjct 1140 AAAAA---TACTAAAACCCTCTTTAAACTTGGAAACTTCATGGTTCAGTATGGACCCGAG 1196
Query 1201 AGAGTCGTCCCCTCTTCAATAAAAGTTACATCATT 1235
|| ||||||||||||| ||||||||||| ||||||
Sbjct 1197 AGTGTCGTCCCCTCTTTAATAAAAGTTATATCATT 1231
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53173982020
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5