BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25920.1
Length=1103
Score E
Sequences producing significant alignments: (Bits) Value
Ahg900081 jgi|Araly1|900081|Al_scaffold_0004_731 1330 0.0
> Ahg900081 jgi|Araly1|900081|Al_scaffold_0004_731
Length=831
Score = 1330 bits (720), Expect = 0.0
Identities = 793/828 (96%), Gaps = 5/828 (1%)
Strand=Plus/Plus
Query 127 ATGACGTCGTCCTCTCCAACACAGCGTACTCACGTCTCAATTCCTCCTGAACCAGGAGGA 186
||| ||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGCGTCGTCTTCTCCAACTCAGCGTACTCACGTCTCAATTCCTCCCGAACCAGGAGGA 60
Query 187 AAGTCACTAACACAAGAAGCTAATGAGCCACCAGTTCCGATATCAGTTTCCTCGCCGTGC 246
|||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 61 AAGTCACTGACACAAGAAGCTAATGATCCACCAGTTCCGATATCAGTTTCGTCGCCGTGC 120
Query 247 GGGAAACGAACCAGAGATCCCGAAGACGAGGTCTATCTCGATAACCTTCGCTCTCAGAAA 306
|||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||
Sbjct 121 GGGAAACGAACCAGAGATCCGGAAGATGAGGTCTATCTTGATAACCTTCGCTCTCAGAAA 180
Query 307 CGTTATCTTAGCGAGATAATGGCTTGTAGTTTAAACGGACTAACAGTAGGAGACTCACTT 366
||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||
Sbjct 181 CGTTATCTTAGCGAGATAATGGCGTGTAGTTTAAACGGATTAACAGTCGGAGACTCACTT 240
Query 367 CCTGTCAACATGTTAGAGTCTCCAGCACGGTCTGAGAGCTTTCTTTATCACAGGGATGAT 426
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 CCCGTCAACATGTTAGAGTCTCCAGCTCGGTCTGAGAGCTTTCTTTATCACAGGGATGAT 300
Query 427 TTATCATTACAATACTCTCCCATGTCAGAAGACTCGGACGAAGCGAGATTCTGTGAGGAC 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTATCATTACAATACTCTCCCATGTCAGAAGACTCGGACGAAGCGAGATTCTGTGAGGAC 360
Query 487 CCAACAGCAACAGCAAGCACTAGCTCATCGCAACCCGAGAGCCGCCCAACTAGTCCAGTT 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CCAACAGCAACAGCAAGCACTAGCTCATCGCAACCCGAGAGCCGCCCAACTAGTCCAGTT 420
Query 547 TCACCATACCGATACCAAAGACCTCTTACTTCAACAAACTCACCACAACCGTCACCAACA 606
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 421 TCACCATACCGATACCAAAGACCTCTTACTTCAACAAATTCACCACAACCGTCATCAACA 480
Query 607 ATCTTACACCATTCACATACATGTCCTGCCTCCATGATCTCCAATGCAGCAACTACTACT 666
|||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 481 ATCTTACACCGTTCACATACATGTCCTACCTCCATGATCTCCAATGCAACAACTACTACT 540
Query 667 AC-AC-C-ACAGTCTCGCCAAAGAGGATCAGACACAGAAGGAAGGTTTCCATCATCGCCC 723
|| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ACTACTCCACAGTCTCGCCAAAGAGGATCAGACACAGAAGGAAGGTTTCCATCATCGCCC 600
Query 724 AGTGATATCTGCCATTCGGGTGACTTGAGGAGAACCGCTCTACTCAGGTCGGTTCAAATG 783
|| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 601 AGCGATATCTGCCATTCGGGGGACTTGAGGAGAACCGCTCTACTCAGGTCTGTTCAAATG 660
Query 784 AGAACACAACCATGTGGTTATAGTTCAAGTTC-GGGACCAAGCAATATTGACGGTGAAGA 842
|||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||
Sbjct 661 AGAACACAACCATGTGGTTATAATTCAAGTTCAGGG-CCAAGCAATATTGACGGTGAAGA 719
Query 843 GAGGATGTGTTCTAAGTCTATGGAAGAAGATAGAGGCTATAACAAAGGGGAAGATATCCC 902
|||||||||||||||||| ||||||||||||||||||||||| | |||||| |||||| |
Sbjct 720 GAGGATGTGTTCTAAGTCCATGGAAGAAGATAGAGGCTATAATAGAGGGGATGATATCTC 779
Query 903 TTACGCTGAAGTCTCTAGTAAGAGCAAGTCTTGTAAAGCATTGGACAT 950
|||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TTACACTGAAGTCTCTAGTAAGAGCAAGTCTTGTAAAGCATTGGACAT 827
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41096504526
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5