BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25930.1
Length=2658
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481449 jgi|Araly1|481449|fgenesh2_kg.4__509__AT2G25930.1 3304 0.0
> Ahg481449 jgi|Araly1|481449|fgenesh2_kg.4__509__AT2G25930.1
Length=2601
Score = 3304 bits (1789), Expect = 0.0
Identities = 2113/2265 (93%), Gaps = 39/2265 (2%)
Strand=Plus/Plus
Query 399 GTGAAA-AAGGTTGTGAATTGTGAGTGATGAAGAGAGGGAAAGATGAGGAGAAGATATTG 457
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 371 GTGAAATTAGGTTGTGAATTGT--GTGATGAAGAGAGGGAAAGATGAGGAGAAGATATTG 428
Query 458 GAACCTATGTTTCCTCGGCTTCATGTGAATGATGCAGATAAAGGAGGGCCTAGAGCTCCT 517
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 GAACCAATGTTTCCTCGGCTTCATGTGAATGATGCAGATAAAGGAGGGCCTAGAGCTCCT 488
Query 518 CCTAGAAACAAGATGGCTCTTTATGAGCAGCTTAGTATTCCTTCTCAGAGGTTTGGTGAT 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 CCTAGAAACAAGATGGCTCTTTATGAGCAGCTTAGTATTCCTTCTCAGAGGTTTGGTGAT 548
Query 578 CATGGAACGATGAATTCTCGTAGTAACAACACAAGCACTTTGGTTCATCCTGGACCATCT 637
|||||||| | || ||||||||||||||||||||| | ||||||||||||||||||
Sbjct 549 CATGGAAC--T---TT-GCGTAGTAACAACACAAGCACTCTAGTTCATCCTGGACCATCT 602
Query 638 AGTCAGCCTTGTGGTGTGGAAAGAAACTTATCTGTC-CAGCATCTTGATTCTTCAGCCGC 696
| ||||||||||||||||||||| |||||||||| | |||||||||||||||||||| ||
Sbjct 603 AATCAGCCTTGTGGTGTGGAAAGGAACTTATCTG-CTCAGCATCTTGATTCTTCAGCTGC 661
Query 697 AAACCAAGCAACTGAGAAGTTTGTCTCCCAAATGTCCTTCATGGAAAATGTGAGATCTTC 756
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 662 AAACCAAGCAACTGAGAAGTTTGTCTCCCAAATGTCCTTCATGGAAAATGTGAGATCTGC 721
Query 757 GGCACAGCATGATCAGAGGAAAATGGTGAGAGAGGAAGAAGATTTTGCAGTTCCAGTATA 816
|| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 722 GGGACAGCACGATCAGAGGAAAATGGTGAGAGAGGAAGAAGATTTCGCAGTTCCAGTGTA 781
Query 817 TATTAACTCAAGAAGATCTCAGTCTCATGGCAGAACCAAGAGTGGTATTGAGAAGGAAAA 876
||||||||||||||||||| ||| ||||||||||| ||||| ||| ||||||||||||||
Sbjct 782 TATTAACTCAAGAAGATCTGAGTGTCATGGCAGAAACAAGACTGGCATTGAGAAGGAAAA 841
Query 877 ACACACCCCAATGGTGGCACCTAGCTCTCATCACTCCATTCGATTTCAAGAAGTGAATCA 936
||| |||||| |||||| |||||||||| | ||||||||| |||||||||||||||||
Sbjct 842 ACATACCCCATTGGTGGAACCTAGCTCTTGTAACTCCATTCAATTTCAAGAAGTGAATC- 900
Query 937 G-ACAGGCTCAAAGCAAAACGTATGTTTGGCTACTTGTTCAAAACCTGAAGTTAGGGATC 995
| |||||| ||| |||||| | ||| ||||||||||||| ||||||||||
Sbjct 901 GCACAGGCGCAATTCAAAAC---------G-TAC--GTTCAAAACCTGAGGTTAGGGATC 948
Query 996 AGGTCAAGGCGAATGCAAGGTCAGGTGGCTTTGTAATCTCTTTAGATGTATCAGTCACAG 1055
|||| |||||||| |||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 949 AGGTTAAGGCGAAGGCAAAGTCAGGTGGCTTTGTAATCTCTTTAGATTTATCAGTCACAG 1008
Query 1056 AGGAGATTGATCTCGAAAAATCAGCATCAAGTCATGATAGAGTAAATGATTATAATGCTT 1115
|||| ||||||||||||||||||||||| ||| |||| ||||||||||||| ||||||||
Sbjct 1009 AGGAAATTGATCTCGAAAAATCAGCATCGAGTTATGACAGAGTAAATGATTGTAATGCTT 1068
Query 1116 CCTTGAGACAAGAGTCTAGAAATCGGTTATACCGAGATGGTGGCAAAACTCGTCTGAAGG 1175
|||||||||||||||||||||||| |||||| |||||||||||| |||||||| ||||||
Sbjct 1069 CCTTGAGACAAGAGTCTAGAAATCAGTTATATCGAGATGGTGGCGAAACTCGTGTGAAGG 1128
Query 1176 ACACTGATAATGGAGCTGAATCTCACTTGGCAACGGAAAATCATTCACAAGAGGGTCATG 1235
||| |||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||
Sbjct 1129 ACATTGATAATGGAGCTGAATCTCACTTGGAAACGGAAAGTCATTCAGAAGAGGGTCATG 1188
Query 1236 GCAGTCCTGAAGACATTGATAATGATCGTGAATACAGCAAAAGCAGAGCATGCGCCTCTC 1295
||||||||||||||||||||| || |||||||||||||| |||||||| |||||||||||
Sbjct 1189 GCAGTCCTGAAGACATTGATACTGGTCGTGAATACAGCAGAAGCAGAGGATGCGCCTCTC 1248
Query 1296 TGCAGCAGATAAATGAAGAGGCAAGTGATGACGTTTCTGATGATTCGATGGTGGATTCTA 1355
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1249 AGCAGCAGATAAATGAAGAGGCAAGTGATGACGTTTCTGATGATTCGATGGTGGATTCTA 1308
Query 1356 TATCCAGCATAGATGTCTCTCCCGATGATGTTGTGGGTATATTAGGTCAAAAACGTTTCT 1415
|||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1309 TATCCAGCATGGATGTCTCTCCCGATGACGTTGTGGGAATATTAGGTCAAAAACGTTTCT 1368
Query 1416 GGAGAGCAAGGAAAGCCATTGCCAATCAACAAAGAGTATTTGCTGTTCAACTATTTGAGT 1475
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1369 GGAGAGCAAGGAAAGCTATTGCCAATCAACAAAGAGTATTTGCGGTTCAACTATTTGAGT 1428
Query 1476 TGCACAGACTGATTAAGGTTCAAAAACTTATTGCTGCATCACCGGATCTCTTGCTCGATG 1535
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1429 TGCACAGACTAATTAAGGTTCAAAAACTTATTGCTGCATCACCGGATCTCTTGCTCGATG 1488
Query 1536 AGATCAGTTTTCTTGGAAAAGTTTCTGCTAAAAGCTATCCAGTGAAGAAGCTCCTTCCAT 1595
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1489 AGATCAATTTTCTTGGAAAAGTTTCTGCTAAAAGCTATCCAGTGAAGAAGCTCCTACCAT 1548
Query 1596 CAGAATTTCTGGTAAAGCCTCCTCTACCACATGTTGTCGTCAAACAAAGGGGTGACTCGG 1655
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1549 CAGAATTTCTGGTAAAGCCTCCTCTACCACATGTTGTTGTCAAACAAAGGGGCGACTCGG 1608
Query 1656 AGAAGACTGACCAACATAAAATGGAAAGCTCAGCTGAGAACGTAGTTGGGAGGTTGTCAA 1715
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1609 AGAAGACTGACCAACATAAAATGGAAAGCTCAGCCGAGAATGTAGTTGGGAGGTTGTCAA 1668
Query 1716 ATCAAGGTCATCATCAACAATCCAACTACATGCCTTTTGCAAACAACCCACCGGCTTCAC 1775
| |||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||
Sbjct 1669 ACCAAGGTCATCATCAACAATCCAACTACATGCCTTTTGCGAGCAACCCACCCGCTTCAC 1728
Query 1776 CGGCTCCAAATGGATATTGCTTTCCTCCTCAGCCTCCTCCTTCAGGAAATCATCAGCAAT 1835
| ||| ||||||||||||||| |||||||||||||||||||||||| || |||||||||
Sbjct 1729 CAGCTGCAAATGGATATTGCTATCCTCCTCAGCCTCCTCCTTCAGG-AA--ATCAGCAAT 1785
Query 1836 GGTTGATCCCTGTAATGTCTCCCTCGGAAGGACTGATATACAAGCCTCACCCAGGTATGG 1895
|||||||||||||||||||||| || ||||| ||||||||||||||||||| ||||||||
Sbjct 1786 GGTTGATCCCTGTAATGTCTCCTTCAGAAGGGCTGATATACAAGCCTCACCAAGGTATGG 1845
Query 1896 CACACACGGGGCATTATGGAGGATATTATGGTCATTATATGCCTACACCAATGGTAATGC 1955
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1846 GACACACGGGGCATTATGGAGGGTATTATGGTCATTATATGCCTACACCGATGGTAATGC 1905
Query 1956 CTCAATATCACCCCGGCATGGGATTCCCACCTCCTGGTAATGGCTACTTCCCTCCATATG 2015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1906 CTCAATATCACCCCGGCATGGGATTCCCACCTCCTGGTAATGGCTACTTCCCTCCATATG 1965
Query 2016 GAATGATGCCCACCATAATGAACCCATATTGTTCAAGCcaacaacaacaacaacaacaac 2075
|||| ||||||||||| |||||||| ||||||||| ||||||| ||||||||||||||||
Sbjct 1966 GAATTATGCCCACCATGATGAACCCTTATTGTTCAGGCCAACAGCAACAACAACAACAAC 2025
Query 2076 CCAATGAGCAAATGAACCAGTTTGGACATCCTGGAAATCTTCAGAACACCCAACAACAAC 2135
||||||| ||||||||||||||||| ||||| |||||||||||||||| || |||||||
Sbjct 2026 CCAATGACCAAATGAACCAGTTTGGGCATCCCGGAAATCTTCAGAACA-CC--CAACAAC 2082
Query 2136 AACAGAGATCTGAT-AATGAACCTGCTCCACAGCAACAGCAACAGCCAACAAAGTCTTAT 2194
||||||| |||| | |||||| ||||| |||||||||| |||||||||||||||||||||
Sbjct 2083 AACAGAGCTCTG-TAAATGAAGCTGCTGCACAGCAACATCAACAGCCAACAAAGTCTTAT 2141
Query 2195 CCGCGAGCAAGAAAGAGCAGGCAAGGGAGCACAGGAAGCAGTCCAAGTGGGCCACAGGGA 2254
||||| || |||||||||||||||||| |||| ||||||||||||||||| ||||| |||
Sbjct 2142 CCGCGGGCTAGAAAGAGCAGGCAAGGGGGCACGGGAAGCAGTCCAAGTGGCCCACATGGA 2201
Query 2255 ATCTCTGGTAGCAAGTCCTTTCGGCCATTCGCAGCCGTTGATGAGGACAGCAACATCAAC 2314
|||||| ||||||||||||||||||||||| |||| ||||||||||| ||||| ||||||
Sbjct 2202 ATCTCTAGTAGCAAGTCCTTTCGGCCATTCTCAGCTGTTGATGAGGATAGCAAAATCAAC 2261
Query 2315 AATGCACCTGAGCAAACGATGACAACAACCACAACGACGACAAGAACAACTGTTACTCAG 2374
|||||||||||||||| ||||||||| | || |||||||||||||||||||||||||||
Sbjct 2262 AATGCACCTGAGCAAATGATGACAAC-A--ACGACGACGACAAGAACAACTGTTACTCAG 2318
Query 2375 ACAACAAGAGATGGGGGAGGAGTGACGAGAGTGATAAAGGTGGTACCTCACAACGCAAAG 2434
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 2319 ACAACAAGAGATGGGGGAGGAGTGACGAGAGTGATAAAGGTGGTACCTCACAATGCGAAG 2378
Query 2435 CTCGCGAGTGAGAATGCTGCCAGAATTTTCCAGTCAATACAAGAAGAACGTAAACGCTAT 2494
||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 2379 CTCGCAAGTGAGAATGCTGCCAGGATTTTTCAGTCAATACAAGAAGAACGTAAACGCTAT 2438
Query 2495 GACTCCTCTAAGCCTTAATCCTCTCTATGCGTATTGTACTT-GATATGTATTTTACAAAA 2553
|||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||
Sbjct 2439 GACTCCTCTAAGCCTTAATCCTCTCTGTCCGTATTGTACTCAGATATGTATTTTACAAAA 2498
Query 2554 TTAGAAAAATTGTGATAGATGTTATCCTCAATATATGTACCATGTAAACGTATTATGGTG 2613
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2499 GTAGAAAAATTGTGATAGATGTTATC-TCAATATATGTACCATGTAAACGTATTATGGTG 2557
Query 2614 TAAGCCTCATTTATATGTGTTAATTTGTCTTAAAGCCTTGAAATC 2658
|||||||||||| |||||||||| | |||||||||||||||||||
Sbjct 2558 TAAGCCTCATTTGTATGTGTTAAAT-GTCTTAAAGCCTTGAAATC 2601
Score = 427 bits (231), Expect = 2e-118
Identities = 340/389 (87%), Gaps = 21/389 (5%)
Strand=Plus/Plus
Query 1 ATCTTTTTGGGCTCCACTTTTCCTATCTCTTTTTGCCCCTTTCCTC--T-CTCTGT-T-- 54
|||||||||||||||||||||||||||||||||||||| ||||||| | |||| | |
Sbjct 1 ATCTTTTTGGGCTCCACTTTTCCTATCTCTTTTTGCCCGTTTCCTCTATCCTCTCTCTCC 60
Query 55 -CACAAGTCATCTTCTTC--CTTCCTCTGAATCT-T-GTTCCTTTTTGCTCTCTCTACTT 109
||||||||||||||||| | |||||||||||| | ||||||||||||||||||||||
Sbjct 61 CCACAAGTCATCTTCTTCTTCCTCCTCTGAATCTCTGGTTCCTTTTTGCTCTCTCTACTA 120
Query 110 GATTCACCCACTCTGTTTCTCGATTAGTACGTTGAAAACTCACTTTGGTTTTGTTTGATT 169
||||||| |||||||| ||||||||| | | || |||||||||| ||||||||||||||
Sbjct 121 AATTCACCGACTCTGTTACTCGATTAGCAAGGTG-AAACTCACTTGGGTTTTGTTTGATT 179
Query 170 CCTCTTTAGT-C---TGTTTTTCGATTTCGTTTTCTCTGATTGGTTTGGTGGTGAGATCT 225
||||||||| | | ||||| ||||| |||||||||| |||||||||||||||
Sbjct 180 TCTCTTTAGTCCTTTTTTTTTTTAATTTCATTTTCTCTGA-----TTGGTGGTGAGATCT 234
Query 226 CTATCGTAGTTTGTCCTTTGGGTTAAGATATTTCATTTGATTGGTGGGTTTGTTTTATTG 285
||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 CTATCTTAGTCGGTCCTTTGGGTTAAGATATTTCATTTGATTGGTGGGTTTGTTTTATTG 294
Query 286 AAGCTTATTGTTGTGAAAGTTGGAGTCTTTCTCAGTTTTTAGGTTGAATTATTAAGAGAA 345
|||||| ||||| |||||||||||||||| ||| |||||||||| ||||||| ||||||
Sbjct 295 AAGCTTCTTGTTACGAAAGTTGGAGTCTTTTTCAATTTTTAGGTTAAATTATTGAGAGAA 354
Query 346 AGGGAAGATTTTTGGTGTGAAGTTAGGTT 374
| ||||||||||||||||||| |||||||
Sbjct 355 AAGGAAGATTTTTGGTGTGAAATTAGGTT 383
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100253524840
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5