BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25940.1
Length=1640
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481450 jgi|Araly1|481450|fgenesh2_kg.4__510__AT2G25940.1 2390 0.0
Ahg491400 jgi|Araly1|491400|fgenesh2_kg.7__833__AT4G32940.1 1205 0.0
Ahg944493 jgi|Araly1|944493|scaffold_700722.1 196 3e-49
> Ahg481450 jgi|Araly1|481450|fgenesh2_kg.4__510__AT2G25940.1
Length=1652
Score = 2390 bits (1294), Expect = 0.0
Identities = 1540/1656 (93%), Gaps = 27/1656 (2%)
Strand=Plus/Plus
Query 1 ACCTAACAATGACCACCGTCG-TTTC-C-TTTCTCGCCCTCTTCCTCTTTCTAGTCGCCG 57
||||||||||||||||||||| || | ||||||||||||||||||| |||||||||||
Sbjct 1 ACCTAACAATGACCACCGTCGCCGTCACGTTTCTCGCCCTCTTCCTCTATCTAGTCGCCG 60
Query 58 CCGTTTCTGGTGACGTCATCAAACTTCCTTCTCTAGCTTCTAAGTTCTTCCGCCCAACTG 117
| ||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||
Sbjct 61 CTGTTTCTGGTGACGTCATCAAACTTCCTTCTCAAGCTTCCAAGTTCTTCCACCCAACTG 120
Query 118 AAAACGACGATGATTCTACTAAGTGGGCTGTTCTCGTCGCCGGATCCAGCGGATACTGGA 177
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 121 AAAACGACGATGATTCTACTAGGTGGGCTGTTCTCGTCGCCGGATCTAGCGGATACTGGA 180
Query 178 ATTATCGTCATCAGGCGGATGTTTGTCATGCTTATCAGCTTTTGAAGAAAGGTGGAGTGA 237
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATTATCGACATCAGGCGGATGTTTGTCATGCTTATCAGCTTTTGAAGAAAGGTGGAGTGA 240
Query 238 AAGAGGAGAATATTGTGGTGTTTATGTATGATGACATTGCGAAGAACGAGGAGAATCCAA 297
|||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 241 AAGAGGAGAATATTGTAGTGTTCATGTATGATGACATTGCGAAGAACGAAGAGAATCCAA 300
Query 298 GACCTGGAGTTATTATCAATAGTCCTAATGGAGAGGATGTCTATAATGGAGTTCCCAAGG 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GACCTGGAGTTATTATCAATAGTCCTAATGGAGAGGATGTCTATAATGGAGTTCCCAAGG 360
Query 358 ATTACACTGGAGATGAAGTTAATGTTGATAACTTATTAGCTGTGATTCTTGGAAACAAAA 417
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 361 ATTACACTGGAGATGATGTTAATGTTGATAACTTATTAGCTGTGATCCTTGGAAATAAAA 420
Query 418 CGGCTCTTAAAGGAGGAAGTGGGAAAGTTGTAGATAGCGGTCCAAACGATCATATCTTTA 477
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CAGCTCTTAAAGGAGGAAGTGGGAAAGTTGTAGATAGCGGTCCAAACGATCATATCTTTA 480
Query 478 TATACTATAGTGATCACGGTGGTCCGGGAGTGCTCGGGATGCCAACTTCTCCAAACCTAT 537
|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 481 TATACTATAGTGATCACGGTGGCCCGGGAGTGCTCGGGATGCCAACTTCTCCGTACCTAT 540
Query 538 ATGCAAATGATCTCAATGATGTCTTGAAGAAAAAATATGCTTCAGGAACATATAAGAGCT 597
||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 541 ATGCAAACGATCTCAATGATGTCCTGAAGAAAAAACATGCTTCAGGAACATATAAGAGCT 600
Query 598 TGGTGTTTTATTTGGAGGCTTGTGAATCTGGAAGTATTTTTGAAGGTCTTTTACCAGAGG 657
||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 601 TGGTGTTTTATTTAGAGGCTTGTGAGTCTGGAAGTATTTTTGAAGGCCTTTTACCAGAGG 660
Query 658 GTTTAAATATTTACGCGACAACTGCATCGAATGCAGAAGAAAGTAGCTGGGGTACTTACT 717
||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 661 GTTTAAACATTTACGCGACAACTGCATCGAATGCAGTAGAAAGTAGCTGGGGTACTTATT 720
Query 718 GTCCTGGAGAGGATCCTAGTCCTCCTTCTGAGTATGAGACCTGTTTGGGTGACTTATACA 777
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 721 GTCCTGGAGAGGATCCTAGTCCTCCTTCCGAGTATGAGACCTGTTTGGGTGACTTATACA 780
Query 778 GTGTTGCTTGGATAGAAGATAGTGAAAAACACAATTTACAAACAGAGACTTTGCACGAGC 837
||||||||||||| ||||||||||| | ||| |||||||| ||||||||||||||| |||
Sbjct 781 GTGTTGCTTGGATGGAAGATAGTGATATACATAATTTACAGACAGAGACTTTGCACCAGC 840
Query 838 AATATGAATTGGTGAAAAAGAGAACTGCAGGTTCTGGTAAGTCTTATGGTTCTCATGTTA 897
|||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||| |
Sbjct 841 AATATGAACTGGTGAAAAAGAGGACTGCAGGTTCTGGTAAGTCTTTTGGTTCTCATGTCA 900
Query 898 TGGAATTTGGAGATATAGGACTCAGCAAGGAGAAGCTTGTCCTTTTTATGGGTACAAATC 957
|||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |
Sbjct 901 TGGAATTTGGAGATATAGGACTCAGCAAGGAGAAGCTTGTTCTTTATATGGGTACAAACC 960
Query 958 CAGC-AGATGAAAACTTCACCTTTGTGAATGAGAATTCAATAAGGCCGCCTTCAAGAGTT 1016
|||| | ||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 961 CAGCCA-ATGAAAACTTCACCTTTGTGAATGAAAATTCACTAAGGCCGCCTTCAAGAGTT 1019
Query 1017 ACAAACCAGCGTGATGCGGATCTTGTCCATTTCTGGCATAAGTATCAAAAGGCACCGGAA 1076
||||| |||||||| ||||||||||||||||||||| ||||||||| ||||||||| |||
Sbjct 1020 ACAAATCAGCGTGACGCGGATCTTGTCCATTTCTGGGATAAGTATCGAAAGGCACCAGAA 1079
Query 1077 GGGTCAGCAAGAAAAGTTGAAGCTCAGAAGCAAGTCCTTGAAGCAATGTCTCACAGACTT 1136
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 GGTTCTGCAAGAAAAGTTGAAGCTCAGAAGCAAGTCCTTGAAGCAATGTCTCACAGACTT 1139
Query 1137 CATGTTGATAATAGCATTCTGTTGATTGGGATTCTTTTGTTTGGTTTGGA-AGGTCATGC 1195
||||| |||||||||||||| || ||||||| || |||||||||||||| || || |||
Sbjct 1140 CATGTCGATAATAGCATTCTATTAATTGGGAAACTCTTGTTTGGTTTGGACAG-TCCTGC 1198
Query 1196 GGTGTTAAATAAAGTCCGGCCTTCTGGAGA-ACCGCTTGTTGACGATTGGGACTGCCTTA 1254
||| ||||||| ||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1199 GGTACTAAATAATGTCCGGCCTTCTGGA-ACACCGCTTGTTGACGATTGGGACTGCCTTA 1257
Query 1255 AATCTCTGGTGAGAGCTTTCGAGAGGCACTGTGGATCGTTGTCTCAGTACGGAATAAAGC 1314
|||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1258 AATCGCTGGTGAGAGTTTTCGAGATGCACTGTGGATCGTTGTCTCAGTACGGAATAAAGC 1317
Query 1315 ACATGAGGTCGATTGCAAACATGTGCAACGCAGGGATTCAGATGAGG-CAAATGGAGGAG 1373
|||||||||||||||||||||| ||||||||||| ||||||||| || || ||||||||
Sbjct 1318 ACATGAGGTCGATTGCAAACATATGCAACGCAGGAATTCAGATG-GGACAGATGGAGGAA 1376
Query 1374 GCAGCAATGCAGGCTTGTCCCACCATCCCTACCAGTCCTTGGAGCTCTCTTGACCGTGGA 1433
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 1377 GCAGCAATGCAGGCTTGTCCCACCATCCCTGCCAGTCCTTGGAGCTCTCTTGACCGCGGA 1436
Query 1434 TTCAGTGCTTGATCTTCGTCTCCGCCCTATATT---A----A--TCGATGTCCATTAATA 1484
|| ||||||||||| |||| || | || ||||| | | ||||| ||||||||||
Sbjct 1437 TTTAGTGCTTGATCCTCGTATCTGTCCAATATTTGTACCCCAAATCGATCTCCATTAATA 1496
Query 1485 --T-CT-T--ACTACCAATTATACTCCTTCCTATGTAGACAAGATGTTGTAAATATGGGA 1538
| || | | ||| ||||||| || |||||||||| |||||||||||||||||||| |
Sbjct 1497 ACTTCTGTGTATTACAAATTATAATCTTTCCTATGTACACAAGATGTTGTAAATATGGTA 1556
Query 1539 TGCTTAAGTTCTTGATGTCACAGACAAAAGAAACAGTGATTGTAAGTAGTTGTTTCAAAT 1598
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1557 TGCTTAAGTTCTTGATGTCACAAACAAAAGACACAGTGATTGTAAGTAGTTGTTTCAAAT 1616
Query 1599 AATCTTTGT-TGTTCAAGTGATTTCAAGGCTTTAAG 1633
||||||| ||||| ||||||||||||||||||||
Sbjct 1617 AATCTTTAACTGTTCCAGTGATTTCAAGGCTTTAAG 1652
> Ahg491400 jgi|Araly1|491400|fgenesh2_kg.7__833__AT4G32940.1
Length=1860
Score = 1205 bits (652), Expect = 0.0
Identities = 1112/1331 (84%), Gaps = 43/1331 (3%)
Strand=Plus/Plus
Query 134 TACTAAGTGGGCTGTTCTCGTCGCCGGATCCAGCGGATACTGGAATTATC-GTCATCAGG 192
||||| |||||||||||| ||||||||||| |||||||| |||||||| | | |||||||
Sbjct 292 TACTAGGTGGGCTGTTCTAGTCGCCGGATCTAGCGGATATTGGAATTA-CAGGCATCAGG 350
Query 193 CGGATGTTTGTCATGCTTATCAGCTTTTGAAGAAAGGTGGAGTGAAAGAGGAGAATATTG 252
| ||| | || ||||||||||| ||| ||| |||||||||| ||||||||||||||||||
Sbjct 351 CTGATATATGCCATGCTTATCAACTTCTGAGGAAAGGTGGACTGAAAGAGGAGAATATTG 410
Query 253 TGGTGTTTATGTATGATGACATTGCGAAGAACGAGGAGAATCCAAGACCTGGAGTTATTA 312
|||| |||||||||||||| ||||| || || | ||||||||||| |||||| ||||
Sbjct 411 TGGTATTTATGTATGATGATATTGCTAACAATTACGAGAATCCAAGGCCTGGAACCATTA 470
Query 313 TCAATAGTCCTAAT-GGAGAGGATGTCTAT-AATGGAGTTCCCAAGGATTACACTGGAGA 370
|||| || ||| || ||| ||||||||||| || ||||||||||||||||| | ||||||
Sbjct 471 TCAACAGCCCTCATGGGA-AGGATGTCTATCAA-GGAGTTCCCAAGGATTATATTGGAGA 528
Query 371 TGAAGTTAATGTTGATAACT-TATTAGCTGTGATTCTTGGAAACAAAACGGCTCTTAAAG 429
||| |||||||||||||| | |||| |||||||| |||||| ||||||| || ||||||
Sbjct 529 TGATGTTAATGTTGATAA-TCTATTTGCTGTGATCCTTGGAGACAAAACTTCTGTTAAAG 587
Query 430 GAGGAAGTGGGAAA-GTTGTAGATAGCGGTCCAAACGATCATATCTTTATATACTATAGT 488
| |||||| ||||| ||||| ||||| ||||| || ||||||||||| |||| ||| |||
Sbjct 588 GGGGAAGT-GGAAAGGTTGTGGATAGTGGTCCTAATGATCATATCTTCATATTCTACAGT 646
Query 489 GATCACGGTGGTCCGGGAGTGCTCGGGATGCCAACTTCTCCAAACCTATATGCAAATGAT 548
|| || ||||| || ||||| || |||||||| |||||||| |||||||||||||||||
Sbjct 647 GACCATGGTGGCCCTGGAGTTCTTGGGATGCCGACTTCTCCTTACCTATATGCAAATGAT 706
Query 549 CTCAATGATGTCTTGAAGAAAAAATATGCTTCAGGAACATATAAGAGCTTGGTGTTTTAT 608
||||||||||| |||||||||||| ||||||||||||| ||||| |||||||||||||||
Sbjct 707 CTCAATGATGTATTGAAGAAAAAACATGCTTCAGGAACCTATAAAAGCTTGGTGTTTTAT 766
Query 609 TTGGAGGCTTGTGAATCTGGAAGTATTTTTGAAGGTCTT-TTACCAGAGGGTTTAAATAT 667
| || |||||||||||||||||||| |||||||| || || ||||||||||| || ||
Sbjct 767 CTCGAAGCTTGTGAATCTGGAAGTATCTTTGAAGGGATTCTT-CCAGAGGGTTTGAACAT 825
Query 668 TTACGCGACAACTGCATCGAATGCAGAAGAAAGTAGCTGGGGTACTTACTGTCCTGGAGA 727
|| || ||||||||||| || || |||||||| || |||||||| || || ||||||||
Sbjct 826 CTATGCCACAACTGCATCAAACGCCGAAGAAAGCAGTTGGGGTACCTATTGCCCTGGAGA 885
Query 728 GGATCCTAGTCCTCCTTCTGAGTATGAGACCTGTTTGGGTGACTTATACAGTGTTGCTTG 787
||| ||||||||||| | |||||||| || ||||| |||||||| ||||||||||||||
Sbjct 886 GGAACCTAGTCCTCCACCGGAGTATGAAACTTGTTTAGGTGACTTGTACAGTGTTGCTTG 945
Query 788 GATAGAAGATAGTGAAAAACACAATTTACAAACAGAGACTTTGCACGAGCAATATGAA-T 846
||| |||||||||| | ||||||||||| || |||||| ||||| ||||||||||| |
Sbjct 946 GATGGAAGATAGTGGTATGCACAATTTACAGACTGAGACTCTGCACCAGCAATATGAACT 1005
Query 847 TGGTGAAAAAGAGAACTGCAGGT-TCTGG-TAAGTCTTATGGTTCTCATGTTATGGAATT 904
|| |||||| ||| |||||| | | ||| || ||||||||||||||||| ||| |||
Sbjct 1006 TG-TGAAAAGGAGGACTGCACCTGT-TGGGTAC-TCTTATGGTTCTCATGTCATGCAATA 1062
Query 905 TGGAGATATAGGACTCAGCAAGGAGAAGCTTG-TCCTTTTTATGGGTACAAATCCAGC-A 962
||| ||| ||||||| |||||||| || || | || ||| |||||| ||||| || || |
Sbjct 1063 TGGCGATGTAGGACTTAGCAAGGATAATCTCGATC-TTTATATGGGAACAAACCCTGCCA 1121
Query 963 GATGAAAACTTCACCTTTGTGAATGAGAATTCAAT-AAGGCCGCCTTCAAGAGTTACAAA 1021
|||| || ||||| |||||| ||| |||||| | ||| || |||||||||||||||||
Sbjct 1122 -ATGACAATTTCACATTTGTGGATGCCAATTCACTGAAG-CCACCTTCAAGAGTTACAAA 1179
Query 1022 CCAGCGTGATGCGGATCTTGTCCATTTCTGGCATAAGTATCA-AAAGGCACCGGAAGGGT 1080
|||||||||||| |||||||||||||| ||| | ||||| | |||| |||| ||||| |
Sbjct 1180 CCAGCGTGATGCAGATCTTGTCCATTTTTGGGAAAAGTACCGGAAAG-CACCAGAAGGTT 1238
Query 1081 CAGCAAG-AAAAGTTGAAGCTCAGAAGCAAGTCCTTGAAGCAATGTCTCACAGACTTCAT 1139
| || || |||| ||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1239 CCGCCAGGAAAACA-GAAGCTCAGAAGCAAGTACTTGAAGCCATGTCTCACAGACTTCAT 1297
Query 1140 GTTGATAATAGCATTCTGTT-GATTGGGATTCTTTTGTTTGG--TTTGGAA-GGTCATGC 1195
||||| |||||| | | | | | || | | |||||||| ||| ||| |||| ||
Sbjct 1298 GTTGACAATAGCGTGATACTCG-TCGGAAAAATCTTGTTTGGCATTTCGAAAGGTCCTGA 1356
Query 1196 GGTGTTAAATAAAGTCCGGCCTTCTGGAG-AACCGCTTGTTGACGATTGGGACTGCCTTA 1254
||| |||| ||||| ||| || |||| | ||||||| || || || ||| |||||||||
Sbjct 1357 AGTGCTAAACAAAGTACGGTCTGCTGG-GCAACCGCTAGTCGATGACTGGAACTGCCTTA 1415
Query 1255 AATCTCTGGTGAGAGCTTTCGAGAGGCACTGTGGATCGTTGTCTCAGTACGGAATAAAGC 1314
|| |||||||||||||||||||||||||||||||||| ||||||||||||| || ||||
Sbjct 1416 AAAATCTGGTGAGAGCTTTCGAGAGGCACTGTGGATCGCTGTCTCAGTACGGTATCAAGC 1475
Query 1315 ACATGAGGTCGATTGCAAACATGTGCAACGCAGGGATTCAGA--TGAGGCAAATGGAGGA 1372
|||||||||| |||||||||| |||||||||||||| | || |||| |||||||||||
Sbjct 1476 ACATGAGGTCCTTTGCAAACATCTGCAACGCAGGGATCC-GAACTGAG-CAAATGGAGGA 1533
Query 1373 GGCAGCAATG-CAGGCTTGTCCCACCATCCCTACCAG-TCCTTGGAGCTCTCTTGACCGT 1430
|||||| | ||||||||| || | ||||| ||| | |||||||||||| ||| |||||
Sbjct 1534 GGCAGCT-TCACAGGCTTGTACCTCAATCCC-ACCTGGTCCTTGGAGCTCGCTTCACCGT 1591
Query 1431 GGATTCAGTGC 1441
|||||||||||
Sbjct 1592 GGATTCAGTGC 1602
> Ahg944493 jgi|Araly1|944493|scaffold_700722.1
Length=1403
Score = 196 bits (106), Expect = 3e-49
Identities = 355/469 (76%), Gaps = 42/469 (9%)
Strand=Plus/Plus
Query 600 GTGTTTTATTTGGAGGCTTGTGAATCTGGAAGTATTTTTGAA-GG--TCTT-TTACCAGA 655
||||||||| | | |||||||||||||||||||| |||||| || |||| || |||||
Sbjct 586 GTGTTTTATGTCCAAGCTTGTGAATCTGGAAGTATCTTTGAAGGGCTTCTTCTT-CCAGA 644
Query 656 GGGTTTAAATATTTACGCGACAACTGCATCGAATGCAGAAGAAAGTAGCTGGGGTACTTA 715
|||||| || ||||| || ||||||||||| || || ||| ||| ||| | |
Sbjct 645 GGGTTTGAACATTTATGCCACAACTGCATCAAACGCTGAA-AAA--AGC------A-GT- 693
Query 716 CTGTCCTGGAGAGGATCCTAGTCCTCCTTCTG-AGTATGAGACCTGTTTGGGTGACTTAT 774
|| ||||||||||| ||| ||||||| ||| ||||||| || ||||| | |||| | |
Sbjct 694 -TGCCCTGGAGAGGAACCTTGTCCTCC-ACTGAAGTATGAAACTTGTTTAGTTGAC-T-T 749
Query 775 ACAGTGTTG-CTTGGATAGAAGATAGTGAAAAACACAATTTACAAACAGAGACTTTGCAC 833
|| || | | | | | | | |||| | |||| ||| || || |||||| |||||
Sbjct 750 AC--TG-AGAC-T--CT-GCA-ACAGTGGTATGCACATTTTTCAGACTGAGACTCTGCAC 801
Query 834 GAGCAATATGAATTGGTGAAAAAGAGAACTGCAGGTTCTGGTAAGTCTTATGGTTCTCAT 893
|| |||||||| ||| | | | ||| ||| ||| | ||||||||||||||
Sbjct 802 CAGAAATATGAACTGGAG-GTCTG-CACCTG--TGTT-GGGTTCG-CTTATGGTTCTCAT 855
Query 894 GTTATGGAATTTGGAGATATAGGACTCAGCAAGGAGAAGCTTGTCCTTTTTATGGGTACA 953
|| ||| ||| ||| ||| ||||||| |||||||| ||||| | ||||| |||||| |||
Sbjct 856 GTCATGCAATATGGCGATGTAGGACTTAGCAAGGATAAGCTCGACCTTTGTATGGGAACA 915
Query 954 AATC-CAG-CAGATGAAAACTTCACCTTTGTGAATGAGAATTCAAT-AAGGCCGCCTTCA 1010
|| | | | || |||| || |||||||||| | ||| ||| ||| | || ||| ||||||
Sbjct 916 AA-CTCTGCCA-ATGACAATTTCACCTTTGCGGATGCGAACTCACTCAA-GCCACCTTCA 972
Query 1011 AGAGTTACAAACCAGCGTGATGCGGATCTTGTCCATTTCTGGCATAAGT 1059
||||||||||||||||||||||| |||||||||||||| ||| | ||||
Sbjct 973 AGAGTTACAAACCAGCGTGATGCAGATCTTGTCCATTTTTGGGAAAAGT 1021
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61477655430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5