BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25950.1
Length=843
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932797 jgi|Araly1|932797|scaffold_400785.1 1020 0.0
> Ahg932797 jgi|Araly1|932797|scaffold_400785.1
Length=657
Score = 1020 bits (552), Expect = 0.0
Identities = 602/627 (96%), Gaps = 0/627 (0%)
Strand=Plus/Plus
Query 82 ATTGGGAAAAATGTCGTGTACGCATGATCACAACTGCGAAGATCATGAGTGTTCTTCCGA 141
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 13 ATTTGGTAAAATGTCGTGTACGCATGATCACAACTGCGAAGATCATGAGTGTTCTTCCGA 72
Query 142 TTGGTCTCTCTACAAACACATTGATCTCTCCAAGGTTTCAGCTCTGAATGAATCTGTTTC 201
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 73 TTGGTCTCTCTACAAACACATTGATCTCTCCAAGGTTTCTGCTCTTAATGAATCTGTTTC 132
Query 202 GGGAAGTGCAAAATCAGTCTTCAAAGCGTGGGAACAGCGATTACACTCTTCTGGGGAGCA 261
||||||||||||||||||||||||||| |||||| || ||||||| ||||||||||||||
Sbjct 133 GGGAAGTGCAAAATCAGTCTTCAAAGCATGGGAAGAGAGATTACAATCTTCTGGGGAGCA 192
Query 262 TTTGGAGAGCAATGAGGGAGACCCTGAATTGCTTGTTTTTGTACCATTTACATCAGACGT 321
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 193 TTTGGAGAGCAATGAGGGAGACCCTGAATTGCTTGTTTTTGTACCATTCACATCAGACGT 252
Query 322 CAAGATCAAGAGCATATCAATTGTTGGTGGCCCTGAAGGAACAAGTCCTTCTAAGTTGAG 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 253 CAAGATCAAGAGCATATCAATTGTTGGTGGCCCTGAAGGAACAAGTCCTTCTAAGTTGAG 312
Query 382 AGTGTTTATCAATCGTGAAGGGATTGACTTCTCCGATGCTGAGAGTATGCAAGCCGTTCA 441
||||||||||||||| ||||| ||||||||||| |||||||||||||||||||| |||||
Sbjct 313 AGTGTTTATCAATCGCGAAGGTATTGACTTCTCAGATGCTGAGAGTATGCAAGCTGTTCA 372
Query 442 GGAATGGGAGTTAGCTGAAAATTTGCAAGGAGTCTTAGAATACCAGACCAGGTATTCAAA 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 373 GGAATGGGAGTTAGCTGAAAATTTGCAAGGAGTCTTAGAATACCAGACCAGGTATTCAAA 432
Query 502 GTTCCAGAGTGTTGGAAACATCACCCTGCATTTCCCTGAGAGTTTTGGAGGTGACACAAC 561
|||||||||||||||||||| || |||||||||||||||| |||||||||||||||||
Sbjct 433 ATTCCAGAGTGTTGGAAACATTACATTGCATTTCCCTGAGAGCTTTGGAGGTGACACAAC 492
Query 562 CCAAATACGTTATATCGGGTTCAAAGGTGAAGCAACCCAGTTGAAAAGAGATGTTGTTGC 621
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 493 TCAAATACGCTATATCGGGTTCAAAGGTGAAGCAACCCAGTTGAAAAGGGATGTTGTTGC 552
Query 622 GACAATCGTATATGAGATTAGACCAAATCCTTCAGATCACAAGACAAAAGCCGAGACTGG 681
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 553 GACAATCGTATATGAGATTAGACCAAATCCTTCAGATCACAAGACAAAAGCTGAGACTGG 612
Query 682 TGGTGGTTTTTCACAAGTTGAATGAAG 708
||| || |||||||||||||| |||||
Sbjct 613 TGGAGGGTTTTCACAAGTTGAGTGAAG 639
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31184546106
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5