BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G25980.1
Length=1627
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481454 jgi|Araly1|481454|fgenesh2_kg.4__514__AT2G25980.1 983 0.0
> Ahg481454 jgi|Araly1|481454|fgenesh2_kg.4__514__AT2G25980.1
Length=1310
Score = 983 bits (532), Expect = 0.0
Identities = 725/811 (89%), Gaps = 41/811 (5%)
Strand=Plus/Plus
Query 603 GTCGACTACGACAAAGATGGAAAAGTGGAAACGCGTCAAGACGGGGACATGCTT-GGAGA 661
||||||||||||||| | ||| ||||||||||||||||||||||||| ||| || |||||
Sbjct 486 GTCGACTACGACAAAAACGGAGAAGTGGAAACGCGTCAAGACGGGGATATG-TTAGGAGA 544
Query 662 AAATAGGGTCCAAGGACAACCAAACGAGTTTGTAGTGGACTATCCATATGAATATATTAC 721
||||||||||| |||||||| ||||||||||||||| |||||||||||||||||| ||||
Sbjct 545 AAATAGGGTCCTAGGACAACAAAACGAGTTTGTAGTTGACTATCCATATGAATATGTTAC 604
Query 722 ATCAATAGAAGTGACCTGTGACAAAGTCTCTGGCAATACAAACCGAGTTAGGTCGTTGAG 781
|||||| || | |||| |||||| || ||||||| | ||||||||||||||||||||||
Sbjct 605 ATCAATCGAGGGGACCGGTGACATAGGATCTGGCAGTTCAAACCGAGTTAGGTCGTTGAG 664
Query 782 TTTCAAGACATCAAAAGACAGAACATCTCCTACATATGGACGTAAGAGCGAGCGAACTTT 841
||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||
Sbjct 665 TTTCAAGACATCAAAAGACAGAACATCTCCTACATATGGACATAAGGGTGAGCGAACTTT 724
Query 842 CGTGTTTGAGAGCAAAGGTAGGGCTCTTGTTGGGCTCCATGGAAGGTGTTGTTGGGCTAT 901
|||||||||||||| ||||||||||||||| ||| || | ||| || |||||
Sbjct 725 CGTGTTTGAGAGCAGAGGTAGGGCTCTTGTCGGG------GG--TG-GTT-TT--GCTAT 772
Query 902 TGATGCTCTAGGTGCACATTTTGGTGCGCCTCCTATTCCTCCACCTCCTCCCACGGAGAA 961
||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 773 TGATGCTATAGGTGCACATTTTGCTGCGCCTCCTATTCCTCCTCCTCCTCCCACGGAGAA 832
Query 962 ACTACAAGGATCAGGTGGTGACGGAGGAGAATCATGGGACGATGGAGCTTTCGACGGTGT 1021
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 833 ACTACAAGGACCAGGTGGTGACAGAGGAGAATCATGGGACGATGGAGCTTTCGACGGTGT 892
Query 1022 GAGAAAGATATACGTGGGACAAGGTGAGAATGGTATCGCATCTGTCAAGTTTGTGTATGA 1081
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 893 GAGAAAGATATACGTGGGACAAGGTGAAAATGGTATTGCATCTGTCAAGTTTGTGTATGA 952
Query 1082 CAAGAACAACCAGTTGGTACTAGGAGAAGAGCATGGAAAGCATACTTTGCTTGGATACGA 1141
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 953 CAAGAACAACCGGTTGGTACTAGGAGAAGAGCATGGAAAGCAGACTTTGCTTGGATACGA 1012
Query 1142 AGAGTTCGAGTTGGACTATCCGAGTGAATACATCACAGCGGTAGAGGGTTATTATGATAA 1201
||||||||||||||| ||||||||||||||||||||| | || ||||| |||||||||||
Sbjct 1013 AGAGTTCGAGTTGGAGTATCCGAGTGAATACATCACAACAGTGGAGGGATATTATGATAA 1072
Query 1202 AGTGTTTGGTAGTGAATCTTCAGTAATAGTCATGCTTAAGTTCAAGACCAATAAACGAAC 1261
||| ||||| |||||||||||| | | | || | || || ||||
Sbjct 1073 AGTATTTGGAAGTGAATCTTCA--A-----C---C--AA-T--AA-AC--------GAAC 1108
Query 1262 CTCCCCGCCTTATGGAATGGATGCTGGCGTTAGCTTCATACTCGGGAAGGAAGGTCACAA 1321
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1109 CTCGCCGCCTTTTGGAATGGATGCTGGCGTTAGCTTCATACTCGGGAAGGAAGGTCACAA 1168
Query 1322 AGTGGTAGGGTTCCATGGAAAAGCTAGTCCCGAGCTCTATCAGATTGGGGTCACTGTTGC 1381
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||
Sbjct 1169 AGTGGTAGGGTTCCATGGAAAATCTAGTCCCGAGCTCTATCAGATTGGGGTCAGTGTCGC 1228
Query 1382 CCCAATCACCAAGTGACGACGTCCTTGAACT 1412
||||||||||||||||| ||||||||||
Sbjct 1229 ACCAATCACCAAGTGACG---TCCTTGAACT 1256
Score = 472 bits (255), Expect = 5e-132
Identities = 303/326 (93%), Gaps = 3/326 (1%)
Strand=Plus/Plus
Query 246 TTTGAGATTAATCATCTCAATGGCGAACATGTGGTGTCAGTAAAAGGTTGCTATGATAAC 305
|||||||||||||||||||||| ||||||| ||||||| ||||| |||||||||||||||
Sbjct 162 TTTGAGATTAATCATCTCAATGACGAACATCTGGTGTCGGTAAAGGGTTGCTATGATAAC 221
Query 306 ATATCCGGTGTGATCCAAGCACTTCAATTCGAAACCAATCAAAGGAGTTCTGAAGTCATG 365
||||| |||||||| |||||||||||||||||||||||||| || |||||||||||||||
Sbjct 222 ATATCTGGTGTGATTCAAGCACTTCAATTCGAAACCAATCAGAGAAGTTCTGAAGTCATG 281
Query 366 GGATACGATGACACTGGCACTAAGTTTACACTTGAAATCAGTGGAAACAAAATCACTGGG 425
||||||||||||| ||||| ||| |||||||||||| |||||||||||||||||||||||
Sbjct 282 GGATACGATGACAATGGCAATAACTTTACACTTGAAGTCAGTGGAAACAAAATCACTGGG 341
Query 426 TTCCATGGATCTGCTGACGCAAACCTAAAATCTCTTGGAGCTTATTTCACACCACCTCCT 485
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||
Sbjct 342 TTCCATGGATCTGCTGAGGCAAACCTAAAATCTCTTGGAGCTTATTTCACACCACTTGCT 401
Query 486 CCTATTAAACAGGAATACCAAGGTGGTACT---GGAGGCAGCCCATGGGACCATGGTATT 542
|||||||||| |||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct 402 CCTATTAAACTGGAATACCAAGGCAGTACTACTGGAGGCAGGCCATGGGACCATGGTATT 461
Query 543 TACACCGGCATAAGAAAAGTCTATGT 568
||||||||| ||||||||||||||||
Sbjct 462 TACACCGGCGTAAGAAAAGTCTATGT 487
Score = 241 bits (130), Expect = 2e-62
Identities = 150/159 (94%), Gaps = 4/159 (3%)
Strand=Plus/Plus
Query 19 TCTCTCTACTCCAAGCATAAGAGTTCTCGATGGCCCAAAGGTTGGAGGCAAAAGGCGGAA 78
|||||||||||||||||||||||||| |||||||||||| |||||| |||||||| || |
Sbjct 1 TCTCTCTACTCCAAGCATAAGAGTTCACGATGGCCCAAAAGTTGGAAGCAAAAGGTGG-A 59
Query 79 AG-GGAGGGAATCAATGGGATGATGGAGCCGACCATGAAAATGTAACAAAGATACATGTA 137
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 AGTGGAGGGAAACAATGGGATGATGGAGCCGACCATGAAAATGTAACAAAGATACATGTA 119
Query 138 CGAGGTGGTCTTGAAGGAA-TCCAATTCATCAAGTTTGA 175
||||||||||||||||||| || ||||||||||||||||
Sbjct 120 CGAGGTGGTCTTGAAGGAAGTC-AATTCATCAAGTTTGA 157
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60982482245
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5