BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G26000.2 Length=1746 Score E Sequences producing significant alignments: (Bits) Value Ahg932812 jgi|Araly1|932812|scaffold_400800.1 2396 0.0 Ahg927447 jgi|Araly1|927447|scaffold_203008.1 1570 0.0 Ahg887838 jgi|Araly1|887838|Al_scaffold_0721_1 307 2e-82 Ahg487466 jgi|Araly1|487466|fgenesh2_kg.6__600__AT5G06560.1 91.6 2e-17 > Ahg932812 jgi|Araly1|932812|scaffold_400800.1 Length=1442 Score = 2396 bits (1297), Expect = 0.0 Identities = 1397/1443 (97%), Gaps = 15/1443 (1%) Strand=Plus/Plus Query 116 GTGAATCCTCTCTCTCCGATATGATTCAGACAGTTCATTTTTCCTCTGGAAACCCTAGAA 175 ||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1 GTGAATCGTCTCTGTCCGATATGACTCAGACAGTTCATTTTTCCTCTGGAAACCCTAGAA 60 Query 176 TCGGCGAGACTCGCGGTGTCATGCATCTAATTTCCGACAATGCTGTTTCGTCATCTTCTT 235 |||||||||||||||| |||||||||||| |||||||| | | | |||| ||||||| Sbjct 61 TCGGCGAGACTCGCGGCGTCATGCATCTATTTTCCGACGA--C-G--TCGT-TTCTTCTT 114 Query 236 CTTCCTCCTCCTCGAATCTCCCTATTGGAAGGAACCCTCTCGTTTGCGTTCTTGGGGTGC 295 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 115 CCTCCTCCTCCTCGAATCTCCCTATTGGAAGGAACCCTCTCGTTTGCGTTCTTGGGGTGC 174 Query 296 CCAACCACATGACATATGCAGATTTTTGCCAGTTCTGCGGCTCCTTCATTCAGCACATAC 355 ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 175 CCAACCACATGACTTATGCAGATTTTTGCCAGTTCTGCGGCTCCTTCATTCACCACATAC 234 Query 356 TGGATATGCGAACCGTCAGGAATGATGACATTGAAAATAGATACAGCATTTTGATAAGGT 415 | || |||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 235 TCGAGATGCGAACCGTCAGGAATGATGACATTGAAAATAGATACAGCATTTTGATTAGGT 294 Query 416 TTGATAGTCAGGAATCTACCGATACATTCTTCCAGCATTTCAGAGGGAAACAGTTCAACT 475 |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 295 TTGATAGTCAGGAATCTACCGATACATTCTTCCACCATTTTAGAGGGAAACAGTTCAACT 354 Query 476 CTCTGGACGAAGATGTCTGTCGCCTGCTTTTTGCTCTTGATGTTCAGTTTACCGGTTATA 535 |||| || |||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 355 CTCTCGAGGAAGATCTCTGTCGCCTGCTTTTTACTCTTGATGTTCAGTTTACCGGTTATA 414 Query 536 GTGGATCCATTGACCATACACAGCCTTCTGCTGCTGGCCCAATAGAGCAACCTACTTGCC 595 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 415 GTGGATCCATTGACCATACACAGCCTTCTGCTGCTGGCCCAATAGAGCAACCTACTTGCC 474 Query 596 CAGTGTGTCTTGAGAGATTGGACCAAGACACAGGTGGCATTCTCACAACCATGTGCAATC 655 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 475 CAGTGTGTCTTGAGAGATTGGACCAAGACACAGGTGGCATTCTCACAACCATGTGCAATC 534 Query 656 ATTCCTTCCATTGCTCATGTATTTCTAATTGGCCAGATTCTTCTTGCCCAGTTTGTCGAT 715 |||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 535 ATTCTTTTCATTGTTCATGTATTTCTAATTGGCCAGATTCTTCTTGCCCAGTTTGTCGAT 594 Query 716 ATTGCCAACAGCAACCTGAAAATTCAGTATGTTGTGTTTGCCAAACAACGGAGAATCTCT 775 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 595 ATTGCCAACAGCAACCTGAAAATTCAGTATGTTGTGTTTGCCAAACAACGGAGAATCTCT 654 Query 776 GGATGTGTGTTATCTGTGGGGTTGTTGGCTGCGGAAGGTACAAGGAAGGACATGCCAGAA 835 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 655 GGATGTGTGTTATCTGTGGGGTTGTTGGCTGCGGAAGGTACAAGGAAGGACATGCCAGAA 714 Query 836 GGCACTGGGAGGAGACAGAGCATTGCTATTCACTTGAGCTTGAAACACAACGTGTTTGGG 895 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 715 GACACTGGGAGGAGACAGAGCATTGCTATTCACTTGAGCTTGAAACACAACGTGTTTGGG 774 Query 896 ATTATGCTGGTGACAATTATGTTCACCGGCTTATTCAATCCAAAACTGATGGCAAGCTAG 955 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 775 ATTATGCTGGTGACAATTATGTTCACCGGCTTATTCAATCCAAAACTGATGGCAAGCTAG 834 Query 956 TGGAGTTGAATTCTCATGGAAGTCTGAGCAAGGATGGTTGTGGAAGCTGTGAATATTCTG 1015 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 835 TGGAGTTGAATTCTCATGGAAGTCTGAGCAAGGATGGTTGTGGAAGCTGTGAATATTCTG 894 Query 1016 ACAGTGGAATGACTGATGCTCTCCTGAACAGCAAAGTGGACATGATCATTAGTGAGTACA 1075 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 895 ACAGTGGAATGACTGATGCTCTCCTGAACAGCAAAGTGGACATGATCATTAGTGAGTACA 954 Query 1076 ACGAACTTCTCCAGGCACAACTAGAGAATCAAAAACAATATTTTGAAAAGTTGCTACAAA 1135 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 955 ACGAACTTCTCCAGGCACAACTAGAGAATCAAAAACAATATTTTGAAAAGTTGCTACAAA 1014 Query 1136 ATGTCAAAGAGGAAACGGAACAGAAAATCTCAGAAGCTGCGAGCAAGGCAATAAGCCAGA 1195 |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| Sbjct 1015 ATGTCAAAGAGGAAACGGAACAGAAAGTCTCAGAAGCTGCGAGCAAGGCGATAAGCCAGA 1074 Query 1196 GACTGCAGAAGCTGCAAACCAGGTTTGACAGATGTGTCAAAGAGAAGCAATTTCTTGAAG 1255 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1075 GACTGCAGAAGCTGCAAACCAGGTTTGACAGATGTGTCAAAGAGAAGCAATTTCTTGAAG 1134 Query 1256 ATTTGAACGAAAATCTTGTGAAAAATAAGGACGTATGGAGCACCAAGATTACAGAAATGA 1315 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1135 ATTTGAACGAAAATCTTGTGAAAAATAAGGACGTATGGAGCACCAAGATTACAGAAATGG 1194 Query 1316 AAGAAAGGGAGAAGAAGGCAGTTCGGGCAAAGGATGAAAAGATTCAGGGCTTAGAAGAAC 1375 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1195 AAGAAAGGGAGAAGAAGGCAGTTCGGGCAAAAGATGAAAAGATTCAGGGCTTAGAAGAAC 1254 Query 1376 AGCTTGGAAACCTAATGGCCCAAATGGATGGTGAGAGTGAAGTCTCAGAGACGAAAGAGG 1435 |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1255 AGCTTGGAAAACTAATGGCCCAAATGGATGGTGAGAGTGAAGTCTCGGAGACGAAAGAGG 1314 Query 1436 TCCAGGACGCCACTGTCT--C----G---ACCACCAATACCTCTTCTTCTGGGGCAGGGA 1486 |||||||||||||||||| | | |||||||||||||||||||||||| |||||| Sbjct 1315 TCCAGGACGCCACTGTCTTGCCCTTGTCGACCACCAATACCTCTTCTTCTGGGTCAGGGA 1374 Query 1487 ATGTTATACATGCAAATAAAAAGAAGAGTAACAGAAGAAAGGGTTAGATCAAGATTCAAA 1546 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1375 ATGTTATACATGCAAATAAAAAGAAGAGTAACAGAAGAAAGAGTTAGATCAAGATTCAAA 1434 Query 1547 CTC 1549 ||| Sbjct 1435 CTC 1437 > Ahg927447 jgi|Araly1|927447|scaffold_203008.1 Length=1489 Score = 1570 bits (850), Expect = 0.0 Identities = 922/958 (96%), Gaps = 0/958 (0%) Strand=Plus/Plus Query 102 GGCAAGCGTTTCCGGTGAATCCTCTCTCTCCGATATGATTCAGACAGTTCATTTTTCCTC 161 ||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||| || Sbjct 83 GGCAAGCGTTTCCGGTGAATCGTCTCTGTCCGATATGACTCAGACAGTTCATTTTTCATC 142 Query 162 TGGAAACCCTAGAATCGGCGAGACTCGCGGTGTCATGCATCTAATTTCCGACAATGCTGT 221 |||||||||||||||||||||||||||||| |||||||||||| |||||||| |||| || Sbjct 143 TGGAAACCCTAGAATCGGCGAGACTCGCGGGGTCATGCATCTATTTTCCGACGATGCCGT 202 Query 222 TTCGTCATCTTCTTCTTCCTCCTCCTCGAATCTCCCTATTGGAAGGAACCCTCTCGTTTG 281 |||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||| Sbjct 203 TTCGTCGTCTTCTTCCTCCTCCTCCTTGAATCTCCCTATTGGAAGGAACCCTCTCGTTTG 262 Query 282 CGTTCTTGGGGTGCCCAACCACATGACATATGCAGATTTTTGCCAGTTCTGCGGCTCCTT 341 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 263 CGTTCTTGGGGTGCCCAACCACATGACATATGCAGATTTTTGCCACTTCTGCGGCTCCTT 322 Query 342 CATTCAGCACATACTGGATATGCGAACCGTCAGGAATGATGACATTGAAAATAGATACAG 401 |||||| ||||||||||| |||||||| |||||||| |||| ||||||||| ||||||| Sbjct 323 CATTCAACACATACTGGAGATGCGAACGGTCAGGAACGATGGGATTGAAAATCGATACAG 382 Query 402 CATTTTGATAAGGTTTGATAGTCAGGAATCTACCGATACATTCTTCCAGCATTTCAGAGG 461 ||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||| Sbjct 383 CATTTTGATAAGGTTCGATAGTCAGGAATCTACCGATACATTCTACCAGCATTTTAGAGG 442 Query 462 GAAACAGTTCAACTCTCTGGACGAAGATGTCTGTCGCCTGCTTTTTGCTCTTGATGTTCA 521 |||||| |||||||||||||| ||||||||||||| ||| |||||| ||||||||||||| Sbjct 443 GAAACAATTCAACTCTCTGGAGGAAGATGTCTGTCACCTTCTTTTTACTCTTGATGTTCA 502 Query 522 GTTTACCGGTTATAGTGGATCCATTGACCATACACAGCCTTCTGCTGCTGGCCCAATAGA 581 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 503 GTTTACCGGTTATAGTGGATCCATTGACCATACACAGCCTTCTGCTGCTGGCCCAATAGA 562 Query 582 GCAACCTACTTGCCCAGTGTGTCTTGAGAGATTGGACCAAGACACAGGTGGCATTCTCAC 641 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 563 GCAACCTACTTGCCCAGTTTGTCTTGAGAGATTGGACCAAGACACAGGTGGCATTCTCAC 622 Query 642 AACCATGTGCAATCATTCCTTCCATTGCTCATGTATTTCTAATTGGCCAGATTCTTCTTG 701 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 623 AACCATGTGCAATCATTCCTTCCATTGCTCATGTATTTCTAATTGGCCAGATTCTTCTTG 682 Query 702 CCCAGTTTGTCGATATTGCCAACAGCAACCTGAAAATTCAGTATGTTGTGTTTGCCAAAC 761 |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 683 CCCAGTTTGTCGATATTGCCAACAGCAATCTGAAAATTCAGTATGTTGTATTTGCCAAAC 742 Query 762 AACGGAGAATCTCTGGATGTGTGTTATCTGTGGGGTTGTTGGCTGCGGAAGGTACAAGGA 821 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 743 AACGGAAAATCTCTGGATGTGTGTTATCTGTGGGGTTGTTGGCTGCGGAAGGTACAAGGA 802 Query 822 AGGACATGCCAGAAGGCACTGGGAGGAGACAGAGCATTGCTATTCACTTGAGCTTGAAAC 881 ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 803 AGGACATGCCAGAAGGCACTGGGAGGAGACAGATCATTGTTATTCACTTGAGCTTGAAAC 862 Query 882 ACAACGTGTTTGGGATTATGCTGGTGACAATTATGTTCACCGGCTTATTCAATCCAAAAC 941 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 863 ACAACGTGTTTGGGATTATGCTGGTGACAATTATGTTCATCGGCTTATTCAATCCAAAAC 922 Query 942 TGATGGCAAGCTAGTGGAGTTGAATTCTCATGGAAGTCTGAGCAAGGATGGTTGTGGAAG 1001 ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 923 TGATGGCAAGCTAGTGGAGTTGAATTCTCATGGTAGGCTGAGCAAGGATGGTTGTGGAAG 982 Query 1002 CTGTGAATATTCTGACAGTGGAATGACTGATGCTCTCCTGAACAGCAAAGTGGACATG 1059 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 983 CTGTGAATATTCTGACAGTGGAATGACTGATGCTCTCCTGAACAGCAAAGTGGACATG 1040 Score = 660 bits (357), Expect = 0.0 Identities = 414/440 (94%), Gaps = 9/440 (2%) Strand=Plus/Plus Query 1114 TATTTTGAAAAGTTGCTACAAAATGTCAAAGAGGAAACGGAACAGAAAATCTCAGAAGCT 1173 |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| Sbjct 1041 TATTTTGAAAAGTTGCTACAAAATGTCAAAGAGGAAACGGAACAGAAAGTCTTAGAAGCT 1100 Query 1174 GCGAGCAAGGCAATAAGCCAGAGACTGCAGAAGCTGCAAACCAGGTTTGACAGATGTGTC 1233 | |||||||||||||||||||||||||||||||||||| |||||||||||||||||| | Sbjct 1101 GGGAGCAAGGCAATAAGCCAGAGACTGCAGAAGCTGCAGACCAGGTTTGACAGATGTTTA 1160 Query 1234 AAAGAGAAGCAATTTCTTGAAGATTTGAACGAAAATCTTGTGAAAAATAAGGACGTATGG 1293 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1161 AAAGAGAAGCAATTTCTTGAAGATTTGAACGAAAATCTTGTGAAAAATAAGGACGTATGG 1220 Query 1294 AGCACCAAGATTACAGAAATGAAAGAAAGGGAGAAGAAGGCAGTTCGGGCAAAGGATGAA 1353 ||||||||||||||||||||| | ||||||||||||||||||||||||| ||| |||||| Sbjct 1221 AGCACCAAGATTACAGAAATGGAGGAAAGGGAGAAGAAGGCAGTTCGGGTAAAAGATGAA 1280 Query 1354 AAGATTCAGGGCTTAGAAGAACAGCTTGGAAACCTAATGGCCCAAATGGATGGTGAGAGT 1413 |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1281 AAGATTGAGGGCTTAGAAGAACAGCTTGGAAAACTAATGGCCCAAATGGATGGTGAGAGT 1340 Query 1414 GAAGTCTCAGAGACGAAAGAGGTCCAGGACGCCACTGTCT--C----G---ACCACCAAT 1464 |||||||||||||||||||||||||||||||||||||||| | | ||||||| | Sbjct 1341 GAAGTCTCAGAGACGAAAGAGGTCCAGGACGCCACTGTCTTGCCCTTGCCGACCACCAGT 1400 Query 1465 ACCTCTTCTTCTGGGGCAGGGAATGTTATACATGCAAATAAAAAGAAGAGTAACAGAAGA 1524 | ||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1401 AACTCTTCTTCTGCGTCAGGGAATGTTATACATGCAAATAAAAAGAAAAGTAACAGAAGA 1460 Query 1525 AAGGGTTAGATCAAGATTCA 1544 |||||||||||||||||||| Sbjct 1461 AAGGGTTAGATCAAGATTCA 1480 > Ahg887838 jgi|Araly1|887838|Al_scaffold_0721_1 Length=219 Score = 307 bits (166), Expect = 2e-82 Identities = 203/219 (93%), Gaps = 9/219 (4%) Strand=Plus/Plus Query 1324 GAGAAGAAGGCAGTTCGGGCAAAGGATGAAAAGATTCAGGGCTTAGAAGAACAGCTTGGA 1383 ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| Sbjct 1 GAGAAGAAGGCAGTTCGGGTAAAGGATGAAAAGATTGAGGGCTTAGAAGAACAGCTTGGA 60 Query 1384 AACCTAATGGCCCAAATGGATGGTGAGAGTGAAGTCTCAGAGACGAAAGAGGTCCAGGAC 1443 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 AAACTAATGGCCCAAATGGATGGTGAGAGTGAAGTCTCAGAGACGAAAGAGGTCCAGGAC 120 Query 1444 GCCACTGTCT--C----G---ACCACCAATACCTCTTCTTCTGGGGCAGGGAATGTTATA 1494 |||||||||| | | ||||||| || ||||||||||| | |||||||||||||| Sbjct 121 GCCACTGTCTTGCCCTTGCCGACCACCAGTAACTCTTCTTCTGCGTCAGGGAATGTTATA 180 Query 1495 CATGCAAATAAAAAGAAGAGTAACAGAAGAAAGGGTTAG 1533 ||||||||||||||||||||||||||||||||||||||| Sbjct 181 CATGCAAATAAAAAGAAGAGTAACAGAAGAAAGGGTTAG 219 > Ahg487466 jgi|Araly1|487466|fgenesh2_kg.6__600__AT5G06560.1 Length=2219 Score = 91.6 bits (49), Expect = 2e-17 Identities = 56/59 (95%), Gaps = 2/59 (3%) Strand=Plus/Plus Query 32 GTGGATCACATCTTTTGTTTTCTGGAGAAAAAAGGCTCGTCGAAGCAAGTA-AGTGAAC 89 |||||||||||||||||||||||||||||||||||||||||||||||| || | ||||| Sbjct 1789 GTGGATCACATCTTTTGTTTTCTGGAGAAAAAAGGCTCGTCGAAGCAAATACA-TGAAC 1846 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65515221400 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5