BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G26000.2
Length=1746
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932812 jgi|Araly1|932812|scaffold_400800.1 2396 0.0
Ahg927447 jgi|Araly1|927447|scaffold_203008.1 1570 0.0
Ahg887838 jgi|Araly1|887838|Al_scaffold_0721_1 307 2e-82
Ahg487466 jgi|Araly1|487466|fgenesh2_kg.6__600__AT5G06560.1 91.6 2e-17
> Ahg932812 jgi|Araly1|932812|scaffold_400800.1
Length=1442
Score = 2396 bits (1297), Expect = 0.0
Identities = 1397/1443 (97%), Gaps = 15/1443 (1%)
Strand=Plus/Plus
Query 116 GTGAATCCTCTCTCTCCGATATGATTCAGACAGTTCATTTTTCCTCTGGAAACCCTAGAA 175
||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 GTGAATCGTCTCTGTCCGATATGACTCAGACAGTTCATTTTTCCTCTGGAAACCCTAGAA 60
Query 176 TCGGCGAGACTCGCGGTGTCATGCATCTAATTTCCGACAATGCTGTTTCGTCATCTTCTT 235
|||||||||||||||| |||||||||||| |||||||| | | | |||| |||||||
Sbjct 61 TCGGCGAGACTCGCGGCGTCATGCATCTATTTTCCGACGA--C-G--TCGT-TTCTTCTT 114
Query 236 CTTCCTCCTCCTCGAATCTCCCTATTGGAAGGAACCCTCTCGTTTGCGTTCTTGGGGTGC 295
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 115 CCTCCTCCTCCTCGAATCTCCCTATTGGAAGGAACCCTCTCGTTTGCGTTCTTGGGGTGC 174
Query 296 CCAACCACATGACATATGCAGATTTTTGCCAGTTCTGCGGCTCCTTCATTCAGCACATAC 355
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 175 CCAACCACATGACTTATGCAGATTTTTGCCAGTTCTGCGGCTCCTTCATTCACCACATAC 234
Query 356 TGGATATGCGAACCGTCAGGAATGATGACATTGAAAATAGATACAGCATTTTGATAAGGT 415
| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 235 TCGAGATGCGAACCGTCAGGAATGATGACATTGAAAATAGATACAGCATTTTGATTAGGT 294
Query 416 TTGATAGTCAGGAATCTACCGATACATTCTTCCAGCATTTCAGAGGGAAACAGTTCAACT 475
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 295 TTGATAGTCAGGAATCTACCGATACATTCTTCCACCATTTTAGAGGGAAACAGTTCAACT 354
Query 476 CTCTGGACGAAGATGTCTGTCGCCTGCTTTTTGCTCTTGATGTTCAGTTTACCGGTTATA 535
|||| || |||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 355 CTCTCGAGGAAGATCTCTGTCGCCTGCTTTTTACTCTTGATGTTCAGTTTACCGGTTATA 414
Query 536 GTGGATCCATTGACCATACACAGCCTTCTGCTGCTGGCCCAATAGAGCAACCTACTTGCC 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 GTGGATCCATTGACCATACACAGCCTTCTGCTGCTGGCCCAATAGAGCAACCTACTTGCC 474
Query 596 CAGTGTGTCTTGAGAGATTGGACCAAGACACAGGTGGCATTCTCACAACCATGTGCAATC 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 CAGTGTGTCTTGAGAGATTGGACCAAGACACAGGTGGCATTCTCACAACCATGTGCAATC 534
Query 656 ATTCCTTCCATTGCTCATGTATTTCTAATTGGCCAGATTCTTCTTGCCCAGTTTGTCGAT 715
|||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 ATTCTTTTCATTGTTCATGTATTTCTAATTGGCCAGATTCTTCTTGCCCAGTTTGTCGAT 594
Query 716 ATTGCCAACAGCAACCTGAAAATTCAGTATGTTGTGTTTGCCAAACAACGGAGAATCTCT 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 ATTGCCAACAGCAACCTGAAAATTCAGTATGTTGTGTTTGCCAAACAACGGAGAATCTCT 654
Query 776 GGATGTGTGTTATCTGTGGGGTTGTTGGCTGCGGAAGGTACAAGGAAGGACATGCCAGAA 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 GGATGTGTGTTATCTGTGGGGTTGTTGGCTGCGGAAGGTACAAGGAAGGACATGCCAGAA 714
Query 836 GGCACTGGGAGGAGACAGAGCATTGCTATTCACTTGAGCTTGAAACACAACGTGTTTGGG 895
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 GACACTGGGAGGAGACAGAGCATTGCTATTCACTTGAGCTTGAAACACAACGTGTTTGGG 774
Query 896 ATTATGCTGGTGACAATTATGTTCACCGGCTTATTCAATCCAAAACTGATGGCAAGCTAG 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 ATTATGCTGGTGACAATTATGTTCACCGGCTTATTCAATCCAAAACTGATGGCAAGCTAG 834
Query 956 TGGAGTTGAATTCTCATGGAAGTCTGAGCAAGGATGGTTGTGGAAGCTGTGAATATTCTG 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 TGGAGTTGAATTCTCATGGAAGTCTGAGCAAGGATGGTTGTGGAAGCTGTGAATATTCTG 894
Query 1016 ACAGTGGAATGACTGATGCTCTCCTGAACAGCAAAGTGGACATGATCATTAGTGAGTACA 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 ACAGTGGAATGACTGATGCTCTCCTGAACAGCAAAGTGGACATGATCATTAGTGAGTACA 954
Query 1076 ACGAACTTCTCCAGGCACAACTAGAGAATCAAAAACAATATTTTGAAAAGTTGCTACAAA 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 ACGAACTTCTCCAGGCACAACTAGAGAATCAAAAACAATATTTTGAAAAGTTGCTACAAA 1014
Query 1136 ATGTCAAAGAGGAAACGGAACAGAAAATCTCAGAAGCTGCGAGCAAGGCAATAAGCCAGA 1195
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 1015 ATGTCAAAGAGGAAACGGAACAGAAAGTCTCAGAAGCTGCGAGCAAGGCGATAAGCCAGA 1074
Query 1196 GACTGCAGAAGCTGCAAACCAGGTTTGACAGATGTGTCAAAGAGAAGCAATTTCTTGAAG 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 GACTGCAGAAGCTGCAAACCAGGTTTGACAGATGTGTCAAAGAGAAGCAATTTCTTGAAG 1134
Query 1256 ATTTGAACGAAAATCTTGTGAAAAATAAGGACGTATGGAGCACCAAGATTACAGAAATGA 1315
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 ATTTGAACGAAAATCTTGTGAAAAATAAGGACGTATGGAGCACCAAGATTACAGAAATGG 1194
Query 1316 AAGAAAGGGAGAAGAAGGCAGTTCGGGCAAAGGATGAAAAGATTCAGGGCTTAGAAGAAC 1375
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1195 AAGAAAGGGAGAAGAAGGCAGTTCGGGCAAAAGATGAAAAGATTCAGGGCTTAGAAGAAC 1254
Query 1376 AGCTTGGAAACCTAATGGCCCAAATGGATGGTGAGAGTGAAGTCTCAGAGACGAAAGAGG 1435
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1255 AGCTTGGAAAACTAATGGCCCAAATGGATGGTGAGAGTGAAGTCTCGGAGACGAAAGAGG 1314
Query 1436 TCCAGGACGCCACTGTCT--C----G---ACCACCAATACCTCTTCTTCTGGGGCAGGGA 1486
|||||||||||||||||| | | |||||||||||||||||||||||| ||||||
Sbjct 1315 TCCAGGACGCCACTGTCTTGCCCTTGTCGACCACCAATACCTCTTCTTCTGGGTCAGGGA 1374
Query 1487 ATGTTATACATGCAAATAAAAAGAAGAGTAACAGAAGAAAGGGTTAGATCAAGATTCAAA 1546
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1375 ATGTTATACATGCAAATAAAAAGAAGAGTAACAGAAGAAAGAGTTAGATCAAGATTCAAA 1434
Query 1547 CTC 1549
|||
Sbjct 1435 CTC 1437
> Ahg927447 jgi|Araly1|927447|scaffold_203008.1
Length=1489
Score = 1570 bits (850), Expect = 0.0
Identities = 922/958 (96%), Gaps = 0/958 (0%)
Strand=Plus/Plus
Query 102 GGCAAGCGTTTCCGGTGAATCCTCTCTCTCCGATATGATTCAGACAGTTCATTTTTCCTC 161
||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||| ||
Sbjct 83 GGCAAGCGTTTCCGGTGAATCGTCTCTGTCCGATATGACTCAGACAGTTCATTTTTCATC 142
Query 162 TGGAAACCCTAGAATCGGCGAGACTCGCGGTGTCATGCATCTAATTTCCGACAATGCTGT 221
|||||||||||||||||||||||||||||| |||||||||||| |||||||| |||| ||
Sbjct 143 TGGAAACCCTAGAATCGGCGAGACTCGCGGGGTCATGCATCTATTTTCCGACGATGCCGT 202
Query 222 TTCGTCATCTTCTTCTTCCTCCTCCTCGAATCTCCCTATTGGAAGGAACCCTCTCGTTTG 281
|||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 203 TTCGTCGTCTTCTTCCTCCTCCTCCTTGAATCTCCCTATTGGAAGGAACCCTCTCGTTTG 262
Query 282 CGTTCTTGGGGTGCCCAACCACATGACATATGCAGATTTTTGCCAGTTCTGCGGCTCCTT 341
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 263 CGTTCTTGGGGTGCCCAACCACATGACATATGCAGATTTTTGCCACTTCTGCGGCTCCTT 322
Query 342 CATTCAGCACATACTGGATATGCGAACCGTCAGGAATGATGACATTGAAAATAGATACAG 401
|||||| ||||||||||| |||||||| |||||||| |||| ||||||||| |||||||
Sbjct 323 CATTCAACACATACTGGAGATGCGAACGGTCAGGAACGATGGGATTGAAAATCGATACAG 382
Query 402 CATTTTGATAAGGTTTGATAGTCAGGAATCTACCGATACATTCTTCCAGCATTTCAGAGG 461
||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 383 CATTTTGATAAGGTTCGATAGTCAGGAATCTACCGATACATTCTACCAGCATTTTAGAGG 442
Query 462 GAAACAGTTCAACTCTCTGGACGAAGATGTCTGTCGCCTGCTTTTTGCTCTTGATGTTCA 521
|||||| |||||||||||||| ||||||||||||| ||| |||||| |||||||||||||
Sbjct 443 GAAACAATTCAACTCTCTGGAGGAAGATGTCTGTCACCTTCTTTTTACTCTTGATGTTCA 502
Query 522 GTTTACCGGTTATAGTGGATCCATTGACCATACACAGCCTTCTGCTGCTGGCCCAATAGA 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 503 GTTTACCGGTTATAGTGGATCCATTGACCATACACAGCCTTCTGCTGCTGGCCCAATAGA 562
Query 582 GCAACCTACTTGCCCAGTGTGTCTTGAGAGATTGGACCAAGACACAGGTGGCATTCTCAC 641
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 563 GCAACCTACTTGCCCAGTTTGTCTTGAGAGATTGGACCAAGACACAGGTGGCATTCTCAC 622
Query 642 AACCATGTGCAATCATTCCTTCCATTGCTCATGTATTTCTAATTGGCCAGATTCTTCTTG 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 623 AACCATGTGCAATCATTCCTTCCATTGCTCATGTATTTCTAATTGGCCAGATTCTTCTTG 682
Query 702 CCCAGTTTGTCGATATTGCCAACAGCAACCTGAAAATTCAGTATGTTGTGTTTGCCAAAC 761
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 683 CCCAGTTTGTCGATATTGCCAACAGCAATCTGAAAATTCAGTATGTTGTATTTGCCAAAC 742
Query 762 AACGGAGAATCTCTGGATGTGTGTTATCTGTGGGGTTGTTGGCTGCGGAAGGTACAAGGA 821
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 743 AACGGAAAATCTCTGGATGTGTGTTATCTGTGGGGTTGTTGGCTGCGGAAGGTACAAGGA 802
Query 822 AGGACATGCCAGAAGGCACTGGGAGGAGACAGAGCATTGCTATTCACTTGAGCTTGAAAC 881
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 803 AGGACATGCCAGAAGGCACTGGGAGGAGACAGATCATTGTTATTCACTTGAGCTTGAAAC 862
Query 882 ACAACGTGTTTGGGATTATGCTGGTGACAATTATGTTCACCGGCTTATTCAATCCAAAAC 941
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 863 ACAACGTGTTTGGGATTATGCTGGTGACAATTATGTTCATCGGCTTATTCAATCCAAAAC 922
Query 942 TGATGGCAAGCTAGTGGAGTTGAATTCTCATGGAAGTCTGAGCAAGGATGGTTGTGGAAG 1001
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 923 TGATGGCAAGCTAGTGGAGTTGAATTCTCATGGTAGGCTGAGCAAGGATGGTTGTGGAAG 982
Query 1002 CTGTGAATATTCTGACAGTGGAATGACTGATGCTCTCCTGAACAGCAAAGTGGACATG 1059
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 983 CTGTGAATATTCTGACAGTGGAATGACTGATGCTCTCCTGAACAGCAAAGTGGACATG 1040
Score = 660 bits (357), Expect = 0.0
Identities = 414/440 (94%), Gaps = 9/440 (2%)
Strand=Plus/Plus
Query 1114 TATTTTGAAAAGTTGCTACAAAATGTCAAAGAGGAAACGGAACAGAAAATCTCAGAAGCT 1173
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 1041 TATTTTGAAAAGTTGCTACAAAATGTCAAAGAGGAAACGGAACAGAAAGTCTTAGAAGCT 1100
Query 1174 GCGAGCAAGGCAATAAGCCAGAGACTGCAGAAGCTGCAAACCAGGTTTGACAGATGTGTC 1233
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 1101 GGGAGCAAGGCAATAAGCCAGAGACTGCAGAAGCTGCAGACCAGGTTTGACAGATGTTTA 1160
Query 1234 AAAGAGAAGCAATTTCTTGAAGATTTGAACGAAAATCTTGTGAAAAATAAGGACGTATGG 1293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1161 AAAGAGAAGCAATTTCTTGAAGATTTGAACGAAAATCTTGTGAAAAATAAGGACGTATGG 1220
Query 1294 AGCACCAAGATTACAGAAATGAAAGAAAGGGAGAAGAAGGCAGTTCGGGCAAAGGATGAA 1353
||||||||||||||||||||| | ||||||||||||||||||||||||| ||| ||||||
Sbjct 1221 AGCACCAAGATTACAGAAATGGAGGAAAGGGAGAAGAAGGCAGTTCGGGTAAAAGATGAA 1280
Query 1354 AAGATTCAGGGCTTAGAAGAACAGCTTGGAAACCTAATGGCCCAAATGGATGGTGAGAGT 1413
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1281 AAGATTGAGGGCTTAGAAGAACAGCTTGGAAAACTAATGGCCCAAATGGATGGTGAGAGT 1340
Query 1414 GAAGTCTCAGAGACGAAAGAGGTCCAGGACGCCACTGTCT--C----G---ACCACCAAT 1464
|||||||||||||||||||||||||||||||||||||||| | | ||||||| |
Sbjct 1341 GAAGTCTCAGAGACGAAAGAGGTCCAGGACGCCACTGTCTTGCCCTTGCCGACCACCAGT 1400
Query 1465 ACCTCTTCTTCTGGGGCAGGGAATGTTATACATGCAAATAAAAAGAAGAGTAACAGAAGA 1524
| ||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1401 AACTCTTCTTCTGCGTCAGGGAATGTTATACATGCAAATAAAAAGAAAAGTAACAGAAGA 1460
Query 1525 AAGGGTTAGATCAAGATTCA 1544
||||||||||||||||||||
Sbjct 1461 AAGGGTTAGATCAAGATTCA 1480
> Ahg887838 jgi|Araly1|887838|Al_scaffold_0721_1
Length=219
Score = 307 bits (166), Expect = 2e-82
Identities = 203/219 (93%), Gaps = 9/219 (4%)
Strand=Plus/Plus
Query 1324 GAGAAGAAGGCAGTTCGGGCAAAGGATGAAAAGATTCAGGGCTTAGAAGAACAGCTTGGA 1383
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 1 GAGAAGAAGGCAGTTCGGGTAAAGGATGAAAAGATTGAGGGCTTAGAAGAACAGCTTGGA 60
Query 1384 AACCTAATGGCCCAAATGGATGGTGAGAGTGAAGTCTCAGAGACGAAAGAGGTCCAGGAC 1443
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAACTAATGGCCCAAATGGATGGTGAGAGTGAAGTCTCAGAGACGAAAGAGGTCCAGGAC 120
Query 1444 GCCACTGTCT--C----G---ACCACCAATACCTCTTCTTCTGGGGCAGGGAATGTTATA 1494
|||||||||| | | ||||||| || ||||||||||| | ||||||||||||||
Sbjct 121 GCCACTGTCTTGCCCTTGCCGACCACCAGTAACTCTTCTTCTGCGTCAGGGAATGTTATA 180
Query 1495 CATGCAAATAAAAAGAAGAGTAACAGAAGAAAGGGTTAG 1533
|||||||||||||||||||||||||||||||||||||||
Sbjct 181 CATGCAAATAAAAAGAAGAGTAACAGAAGAAAGGGTTAG 219
> Ahg487466 jgi|Araly1|487466|fgenesh2_kg.6__600__AT5G06560.1
Length=2219
Score = 91.6 bits (49), Expect = 2e-17
Identities = 56/59 (95%), Gaps = 2/59 (3%)
Strand=Plus/Plus
Query 32 GTGGATCACATCTTTTGTTTTCTGGAGAAAAAAGGCTCGTCGAAGCAAGTA-AGTGAAC 89
|||||||||||||||||||||||||||||||||||||||||||||||| || | |||||
Sbjct 1789 GTGGATCACATCTTTTGTTTTCTGGAGAAAAAAGGCTCGTCGAAGCAAATACA-TGAAC 1846
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65515221400
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5